RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 KIF23Q02241 960 aaPredicted RBP20.58■□□□□ 0.89
CLSTN3-210ENST00000540931 MTMR2Q13614 643 aa20.58■□□□□ 0.89
CLSTN3-210ENST00000540931 RCSD1Q6JBY9 416 aa20.58■□□□□ 0.89
CLSTN3-210ENST00000540931 DHX32Q7L7V1 743 aaKnown RBP20.58■□□□□ 0.89
CLSTN3-210ENST00000540931 ANKRD23Q86SG2 305 aa20.58■□□□□ 0.89
CLSTN3-210ENST00000540931 GTF3C2Q8WUA4 911 aaPredicted RBP20.58■□□□□ 0.89
CLSTN3-210ENST00000540931 GNL3Q9BVP2 549 aaKnown RBP eCLIP20.58■□□□□ 0.89
CLSTN3-210ENST00000540931 VCPKMTQ9H867 229 aa20.58■□□□□ 0.89
CLSTN3-210ENST00000540931 CLIP2Q9UDT6 1046 aa20.58■□□□□ 0.89
CLSTN3-210ENST00000540931 GREB1LQ9C091 1923 aaPredicted RBP20.58■□□□□ 0.88
CLSTN3-210ENST00000540931 GJA5P36382 358 aa20.57■□□□□ 0.88
CLSTN3-210ENST00000540931 ATP2B2Q01814 1243 aa20.57■□□□□ 0.88
CLSTN3-210ENST00000540931 PDE4DIPQ5VU43 2346 aa20.57■□□□□ 0.88
CLSTN3-210ENST00000540931 BLOC1S2Q6QNY1 142 aa20.57■□□□□ 0.88
CLSTN3-210ENST00000540931 GMCL1P1Q8NEA9 526 aa20.57■□□□□ 0.88
CLSTN3-210ENST00000540931 SAGE1Q9NXZ1 904 aa20.57■□□□□ 0.88
CLSTN3-210ENST00000540931 AGTPBP1Q9UPW5 1226 aa20.57■□□□□ 0.88
CLSTN3-210ENST00000540931 SNX14Q9Y5W7 946 aa20.57■□□□□ 0.88
CLSTN3-210ENST00000540931 JAG1P78504 1218 aa20.56■□□□□ 0.88
CLSTN3-210ENST00000540931 IFIT1BQ5T764 474 aaKnown RBP20.56■□□□□ 0.88
CLSTN3-210ENST00000540931 MB21D2Q8IYB1 491 aaPredicted RBP20.56■□□□□ 0.88
CLSTN3-210ENST00000540931 IL17RAQ96F46 866 aa20.56■□□□□ 0.88
CLSTN3-210ENST00000540931 KAT14Q9H8E8 782 aa20.56■□□□□ 0.88
CLSTN3-210ENST00000540931 INCENPQ9NQS7 918 aa20.56■□□□□ 0.88
CLSTN3-210ENST00000540931 IFIT3O14879 490 aaKnown RBP20.55■□□□□ 0.88
CLSTN3-210ENST00000540931 WDR46O15213 610 aaKnown RBP20.55■□□□□ 0.88
CLSTN3-210ENST00000540931 OSBPP22059 807 aa20.55■□□□□ 0.88
CLSTN3-210ENST00000540931 HOXA7P31268 230 aaPredicted RBP20.55■□□□□ 0.88
CLSTN3-210ENST00000540931 LIFRP42702 1097 aa20.55■□□□□ 0.88
CLSTN3-210ENST00000540931 HMGCS2P54868 508 aa20.55■□□□□ 0.88
CLSTN3-210ENST00000540931 GADL1Q6ZQY3 521 aa20.55■□□□□ 0.88
CLSTN3-210ENST00000540931 IFNL1Q8IU54 200 aa20.55■□□□□ 0.88
CLSTN3-210ENST00000540931 CNKSR2Q8WXI2 1034 aa20.55■□□□□ 0.88
CLSTN3-210ENST00000540931 BACH2Q9BYV9 841 aa20.55■□□□□ 0.88
CLSTN3-210ENST00000540931 IL17RBQ9NRM6 502 aa20.55■□□□□ 0.88
CLSTN3-210ENST00000540931 CYP46A1Q9Y6A2 500 aa20.55■□□□□ 0.88
CLSTN3-210ENST00000540931 PHIPQ8WWQ0 1821 aa20.55■□□□□ 0.88
CLSTN3-210ENST00000540931 TNRC18O15417 2968 aaPredicted RBP20.55■□□□□ 0.88
CLSTN3-210ENST00000540931 TNKSO95271 1327 aa20.54■□□□□ 0.88
CLSTN3-210ENST00000540931 USP17L15C9J2P7 530 aa20.54■□□□□ 0.88
CLSTN3-210ENST00000540931 USP17L13C9JLJ4 530 aa20.54■□□□□ 0.88
CLSTN3-210ENST00000540931 USP17L11C9JVI0 530 aa20.54■□□□□ 0.88
CLSTN3-210ENST00000540931 USP17L18D6R9N7 530 aa20.54■□□□□ 0.88
CLSTN3-210ENST00000540931 USP17L22D6RA61 530 aa20.54■□□□□ 0.88
CLSTN3-210ENST00000540931 USP17L17D6RBQ6 530 aa20.54■□□□□ 0.88
CLSTN3-210ENST00000540931 USP17L19D6RCP7 530 aa20.54■□□□□ 0.88
CLSTN3-210ENST00000540931 USP17L20D6RJB6 530 aa20.54■□□□□ 0.88
CLSTN3-210ENST00000540931 FGD1P98174 961 aa20.54■□□□□ 0.88
CLSTN3-210ENST00000540931 USP17L24Q0WX57 530 aa20.54■□□□□ 0.88
CLSTN3-210ENST00000540931 MKRN3Q13064 507 aaKnown RBP20.54■□□□□ 0.88
CLSTN3-210ENST00000540931 WTAPQ15007 396 aa20.54■□□□□ 0.88
CLSTN3-210ENST00000540931 RASEFQ8IZ41 740 aa20.54■□□□□ 0.88
CLSTN3-210ENST00000540931 FBXL16Q8N461 479 aa20.54■□□□□ 0.88
CLSTN3-210ENST00000540931 JAKMIP1Q96N16 626 aaKnown RBP20.54■□□□□ 0.88
CLSTN3-210ENST00000540931 PARK7Q99497 189 aaKnown RBP20.54■□□□□ 0.88
CLSTN3-210ENST00000540931 RNF186Q9NXI6 227 aa20.54■□□□□ 0.88
CLSTN3-210ENST00000540931 TACC3Q9Y6A5 838 aa20.54■□□□□ 0.88
CLSTN3-210ENST00000540931 F5H6K3 240 aa20.53■□□□□ 0.88
CLSTN3-210ENST00000540931 PRC1O43663 620 aa20.53■□□□□ 0.88
CLSTN3-210ENST00000540931 FDX1P10109 184 aa20.53■□□□□ 0.88
CLSTN3-210ENST00000540931 KLRC3Q07444 240 aa20.53■□□□□ 0.88
CLSTN3-210ENST00000540931 TMEM67Q5HYA8 995 aa20.53■□□□□ 0.88
CLSTN3-210ENST00000540931 SYNE3Q6ZMZ3 975 aa20.53■□□□□ 0.88
CLSTN3-210ENST00000540931 STOX1Q6ZVD7 989 aa20.53■□□□□ 0.88
CLSTN3-210ENST00000540931 SIAH1Q8IUQ4 282 aa20.53■□□□□ 0.88
CLSTN3-210ENST00000540931 ACER1Q8TDN7 264 aa20.53■□□□□ 0.88
CLSTN3-210ENST00000540931 BRI3BPQ8WY22 251 aa20.53■□□□□ 0.88
CLSTN3-210ENST00000540931 GMCL1Q96IK5 515 aa20.53■□□□□ 0.88
CLSTN3-210ENST00000540931 CFHR5Q9BXR6 569 aa20.53■□□□□ 0.88
CLSTN3-210ENST00000540931 C22orf23Q9BZE7 217 aa20.53■□□□□ 0.88
CLSTN3-210ENST00000540931 HOXC10Q9NYD6 342 aa20.53■□□□□ 0.88
CLSTN3-210ENST00000540931 PCDH10Q9P2E7 1040 aa20.53■□□□□ 0.88
CLSTN3-210ENST00000540931 MYPNQ86TC9 1320 aa20.53■□□□□ 0.88
CLSTN3-210ENST00000540931 A0A1W2PRG0 241 aa20.52■□□□□ 0.88
CLSTN3-210ENST00000540931 TRPA1O75762 1119 aa20.52■□□□□ 0.88
CLSTN3-210ENST00000540931 CALM1P0DP23 149 aa20.52■□□□□ 0.88
CLSTN3-210ENST00000540931 CALM2P0DP24 149 aa20.52■□□□□ 0.88
CLSTN3-210ENST00000540931 CALM3P0DP25 149 aa20.52■□□□□ 0.88
CLSTN3-210ENST00000540931 RBM25P49756 843 aaKnown RBP20.52■□□□□ 0.88
CLSTN3-210ENST00000540931 ENAHQ8N8S7 591 aaPredicted RBP20.52■□□□□ 0.88
CLSTN3-210ENST00000540931 DCAF4Q8WV16 495 aa20.52■□□□□ 0.88
CLSTN3-210ENST00000540931 MAP3K14Q99558 947 aa20.52■□□□□ 0.88
CLSTN3-210ENST00000540931 TMEM47Q9BQJ4 181 aa20.52■□□□□ 0.88
CLSTN3-210ENST00000540931 ZFYVE28Q9HCC9 887 aa20.52■□□□□ 0.88
CLSTN3-210ENST00000540931 ZSWIM6Q9HCJ5 1215 aa20.52■□□□□ 0.88
CLSTN3-210ENST00000540931 EMILIN3Q9NT22 766 aa20.52■□□□□ 0.88
CLSTN3-210ENST00000540931 CASTP20810 708 aaKnown RBP20.51■□□□□ 0.87
CLSTN3-210ENST00000540931 RCAN1P53805 252 aa20.51■□□□□ 0.87
CLSTN3-210ENST00000540931 IRX3P78415 501 aaPredicted RBP20.51■□□□□ 0.87
CLSTN3-210ENST00000540931 EXOSC10Q01780 885 aaKnown RBP20.51■□□□□ 0.87
CLSTN3-210ENST00000540931 PPP2R5BQ15173 497 aa20.51■□□□□ 0.87
CLSTN3-210ENST00000540931 ANKRD1Q15327 319 aa20.51■□□□□ 0.87
CLSTN3-210ENST00000540931 GPATCH4Q5T3I0 446 aaKnown RBP20.51■□□□□ 0.87
CLSTN3-210ENST00000540931 RUFY3Q7L099 469 aa20.51■□□□□ 0.87
CLSTN3-210ENST00000540931 CATIPQ7Z7H3 387 aa20.51■□□□□ 0.87
CLSTN3-210ENST00000540931 CCDC84Q86UT8 332 aaPredicted RBP20.51■□□□□ 0.87
CLSTN3-210ENST00000540931 CHURC1Q8WUH1 139 aa20.51■□□□□ 0.87
CLSTN3-210ENST00000540931 CCDC69A6NI79 296 aa20.5■□□□□ 0.87
CLSTN3-210ENST00000540931 BTBD19C9JJ37 291 aa20.5■□□□□ 0.87
CLSTN3-210ENST00000540931 PDHXO00330 501 aa20.5■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms