RNA–Protein interactions for RNA: ENST00000540109.5

PTPRD-214, Transcript of protein tyrosine phosphatase, receptor type D, humanhuman

APPRIS P1 TSL 5 BASIC

Gene PTPRD, Length 6,210 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRD-214ENST00000540109 LAMA4Q16363 1823 aa6.78□□□□□ -1.32
PTPRD-214ENST00000540109 TIAM2Q8IVF5 1701 aa6.78□□□□□ -1.32
PTPRD-214ENST00000540109 CAMTA2O94983 1202 aa6.78□□□□□ -1.32
PTPRD-214ENST00000540109 CCT5P48643 541 aa6.78□□□□□ -1.32
PTPRD-214ENST00000540109 TIMM10P62072 90 aa6.78□□□□□ -1.32
PTPRD-214ENST00000540109 PKP1Q13835 747 aa6.78□□□□□ -1.32
PTPRD-214ENST00000540109 CPLX4Q7Z7G2 160 aa6.78□□□□□ -1.32
PTPRD-214ENST00000540109 CCDC110Q8TBZ0 833 aa6.78□□□□□ -1.32
PTPRD-214ENST00000540109 ACTR5Q9H9F9 607 aaPredicted RBP6.78□□□□□ -1.32
PTPRD-214ENST00000540109 CETN2P41208 172 aa6.78□□□□□ -1.32
PTPRD-214ENST00000540109 PRPHP41219 470 aa6.78□□□□□ -1.32
PTPRD-214ENST00000540109 PPP1R2P41236 205 aa6.78□□□□□ -1.32
PTPRD-214ENST00000540109 CDK5RAP3Q96JB5 506 aa6.78□□□□□ -1.32
PTPRD-214ENST00000540109 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP6.78□□□□□ -1.32
PTPRD-214ENST00000540109 NHSQ6T4R5 1651 aa6.77□□□□□ -1.33
PTPRD-214ENST00000540109 EIF3CLB5ME19 914 aaKnown RBP6.77□□□□□ -1.33
PTPRD-214ENST00000540109 MECOMQ03112 1051 aa6.77□□□□□ -1.33
PTPRD-214ENST00000540109 SF3B3Q15393 1217 aaKnown RBP6.77□□□□□ -1.33
PTPRD-214ENST00000540109 SNCBQ16143 134 aa6.77□□□□□ -1.33
PTPRD-214ENST00000540109 SLC10A5Q5PT55 438 aa6.77□□□□□ -1.33
PTPRD-214ENST00000540109 ZNF365Q70YC5 407 aa6.77□□□□□ -1.33
PTPRD-214ENST00000540109 ARHGAP24Q8N264 748 aa6.77□□□□□ -1.33
PTPRD-214ENST00000540109 AIDAQ96BJ3 306 aa6.77□□□□□ -1.33
PTPRD-214ENST00000540109 PDLIM2Q96JY6 352 aa6.77□□□□□ -1.33
PTPRD-214ENST00000540109 EIF3CQ99613 913 aaKnown RBP6.77□□□□□ -1.33
PTPRD-214ENST00000540109 YIPF3Q9GZM5 350 aa6.77□□□□□ -1.33
PTPRD-214ENST00000540109 NID2Q14112 1375 aa6.77□□□□□ -1.33
PTPRD-214ENST00000540109 GUCY2CP25092 1073 aa6.77□□□□□ -1.33
PTPRD-214ENST00000540109 ARHGAP18Q8N392 663 aa6.77□□□□□ -1.33
PTPRD-214ENST00000540109 LZICQ8WZA0 190 aa6.77□□□□□ -1.33
PTPRD-214ENST00000540109 SAAL1Q96ER3 474 aa6.77□□□□□ -1.33
PTPRD-214ENST00000540109 ZMAT2Q96NC0 199 aaKnown RBP6.77□□□□□ -1.33
PTPRD-214ENST00000540109 SEC62Q99442 399 aaKnown RBP6.77□□□□□ -1.33
PTPRD-214ENST00000540109 TRIM7Q9C029 511 aa6.77□□□□□ -1.33
PTPRD-214ENST00000540109 GREM2Q9H772 168 aa6.77□□□□□ -1.33
PTPRD-214ENST00000540109 ST7Q9NRC1 585 aa6.77□□□□□ -1.33
PTPRD-214ENST00000540109 STIM2Q9P246 746 aa6.77□□□□□ -1.33
PTPRD-214ENST00000540109 DDX41Q9UJV9 622 aaKnown RBP6.77□□□□□ -1.33
PTPRD-214ENST00000540109 GOLGA6CA6NDK9 693 aa6.77□□□□□ -1.33
PTPRD-214ENST00000540109 GOLGA6DP0CG33 693 aa6.77□□□□□ -1.33
PTPRD-214ENST00000540109 TRIM14Q14142 442 aa6.77□□□□□ -1.33
PTPRD-214ENST00000540109 BRF1Q92994 677 aa6.77□□□□□ -1.33
PTPRD-214ENST00000540109 GOLGA6AQ9NYA3 693 aa6.77□□□□□ -1.33
PTPRD-214ENST00000540109 STK36Q9NRP7 1315 aa6.77□□□□□ -1.33
PTPRD-214ENST00000540109 STAMBPO95630 424 aa6.77□□□□□ -1.33
PTPRD-214ENST00000540109 ADRA2BP18089 450 aa6.77□□□□□ -1.33
PTPRD-214ENST00000540109 INTS5Q6P9B9 1019 aaKnown RBP6.77□□□□□ -1.33
PTPRD-214ENST00000540109 TCP11Q8WWU5 503 aa6.77□□□□□ -1.33
PTPRD-214ENST00000540109 CABS1Q96KC9 395 aa6.77□□□□□ -1.33
PTPRD-214ENST00000540109 DOCK2Q92608 1830 aa6.77□□□□□ -1.33
PTPRD-214ENST00000540109 FLOT1O75955 427 aa6.77□□□□□ -1.33
PTPRD-214ENST00000540109 ARMC2Q8NEN0 867 aa6.77□□□□□ -1.33
PTPRD-214ENST00000540109 ZNF594Q96JF6 807 aaPredicted RBP6.77□□□□□ -1.33
PTPRD-214ENST00000540109 DENND2AQ9ULE3 1009 aa6.77□□□□□ -1.33
PTPRD-214ENST00000540109 BCL9LQ86UU0 1499 aa6.76□□□□□ -1.33
PTPRD-214ENST00000540109 GPAA1O43292 621 aa6.76□□□□□ -1.33
PTPRD-214ENST00000540109 CEP104O60308 925 aa6.76□□□□□ -1.33
PTPRD-214ENST00000540109 POLE2P56282 527 aa6.76□□□□□ -1.33
PTPRD-214ENST00000540109 LRMPQ12912 555 aa6.76□□□□□ -1.33
PTPRD-214ENST00000540109 CCDC102BQ68D86 513 aa6.76□□□□□ -1.33
PTPRD-214ENST00000540109 NFXL1Q6ZNB6 911 aa6.76□□□□□ -1.33
PTPRD-214ENST00000540109 SPATA5Q8NB90 893 aa6.76□□□□□ -1.33
PTPRD-214ENST00000540109 PUS3Q9BZE2 481 aaKnown RBP6.76□□□□□ -1.33
PTPRD-214ENST00000540109 PRM3Q9NNZ6 103 aa6.76□□□□□ -1.33
PTPRD-214ENST00000540109 TMEM63CQ9P1W3 806 aa6.76□□□□□ -1.33
PTPRD-214ENST00000540109 HMGB3O15347 200 aaKnown RBP6.76□□□□□ -1.33
PTPRD-214ENST00000540109 NTSR2O95665 410 aa6.76□□□□□ -1.33
PTPRD-214ENST00000540109 GPTP24298 496 aa6.76□□□□□ -1.33
PTPRD-214ENST00000540109 ATP5DP30049 168 aa6.76□□□□□ -1.33
PTPRD-214ENST00000540109 TYRO3Q06418 890 aa6.76□□□□□ -1.33
PTPRD-214ENST00000540109 CCDC178Q5BJE1 867 aa6.76□□□□□ -1.33
PTPRD-214ENST00000540109 CAVIN4Q5BKX8 364 aa6.76□□□□□ -1.33
PTPRD-214ENST00000540109 RUFY4Q6ZNE9 571 aa6.76□□□□□ -1.33
PTPRD-214ENST00000540109 FAM71BQ8TC56 605 aa6.76□□□□□ -1.33
PTPRD-214ENST00000540109 JADE2Q9NQC1 790 aa6.76□□□□□ -1.33
PTPRD-214ENST00000540109 THSD7AQ9UPZ6 1657 aa6.76□□□□□ -1.33
PTPRD-214ENST00000540109 NCBP1Q09161 790 aaKnown RBP6.76□□□□□ -1.33
PTPRD-214ENST00000540109 SPA17Q15506 151 aa6.76□□□□□ -1.33
PTPRD-214ENST00000540109 HLFQ16534 295 aa6.76□□□□□ -1.33
PTPRD-214ENST00000540109 PPP2R5EQ16537 467 aa6.76□□□□□ -1.33
PTPRD-214ENST00000540109 VPS36Q86VN1 386 aa6.76□□□□□ -1.33
PTPRD-214ENST00000540109 MB21D2Q8IYB1 491 aaPredicted RBP6.76□□□□□ -1.33
PTPRD-214ENST00000540109 PSDA5PKW4 1024 aaPredicted RBP6.76□□□□□ -1.33
PTPRD-214ENST00000540109 GBP1P32455 592 aa6.76□□□□□ -1.33
PTPRD-214ENST00000540109 LIFRP42702 1097 aa6.76□□□□□ -1.33
PTPRD-214ENST00000540109 ZAP70P43403 619 aa6.76□□□□□ -1.33
PTPRD-214ENST00000540109 KRT83P78385 493 aa6.76□□□□□ -1.33
PTPRD-214ENST00000540109 HSP90AA4PQ58FG1 418 aa6.76□□□□□ -1.33
PTPRD-214ENST00000540109 NAIF1Q69YI7 327 aaPredicted RBP6.76□□□□□ -1.33
PTPRD-214ENST00000540109 KCNG4Q8TDN1 519 aa6.76□□□□□ -1.33
PTPRD-214ENST00000540109 CAPZA3Q96KX2 299 aa6.76□□□□□ -1.33
PTPRD-214ENST00000540109 GDAP1L1Q96MZ0 367 aa6.76□□□□□ -1.33
PTPRD-214ENST00000540109 PDE11AQ9HCR9 933 aa6.76□□□□□ -1.33
PTPRD-214ENST00000540109 LZTFL1Q9NQ48 299 aa6.76□□□□□ -1.33
PTPRD-214ENST00000540109 SATB2Q9UPW6 733 aa6.76□□□□□ -1.33
PTPRD-214ENST00000540109 NIP7Q9Y221 180 aaKnown RBP eCLIP6.76□□□□□ -1.33
PTPRD-214ENST00000540109 ERICH2A1L162 156 aa6.75□□□□□ -1.33
PTPRD-214ENST00000540109 PTPDC1A2A3K4 754 aa6.75□□□□□ -1.33
PTPRD-214ENST00000540109 ENO4A6NNW6 628 aa6.75□□□□□ -1.33
PTPRD-214ENST00000540109 PRC1O43663 620 aa6.75□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms