RNA–Protein interactions for RNA: ENST00000539950.1

VPS13A-213, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-213ENST00000539950 PHACTR4Q8IZ21 702 aa6.4□□□□□ -1.38
VPS13A-213ENST00000539950 VWCEQ96DN2 955 aa6.4□□□□□ -1.38
VPS13A-213ENST00000539950 KCNK12Q9HB15 430 aa6.4□□□□□ -1.38
VPS13A-213ENST00000539950 PCDHB14Q9Y5E9 798 aa6.4□□□□□ -1.38
VPS13A-213ENST00000539950 PCDHA11Q9Y5I1 949 aa6.4□□□□□ -1.38
VPS13A-213ENST00000539950 SLC22A31A6NKX4 558 aa6.39□□□□□ -1.39
VPS13A-213ENST00000539950 HPXP02790 462 aa6.39□□□□□ -1.39
VPS13A-213ENST00000539950 ZGLP1P0C6A0 271 aa6.39□□□□□ -1.39
VPS13A-213ENST00000539950 RAC2P15153 192 aa6.39□□□□□ -1.39
VPS13A-213ENST00000539950 LTKP29376 864 aa6.39□□□□□ -1.39
VPS13A-213ENST00000539950 TRHRP34981 398 aaPredicted RBP6.39□□□□□ -1.39
VPS13A-213ENST00000539950 CWF19L2Q2TBE0 894 aaKnown RBP6.39□□□□□ -1.39
VPS13A-213ENST00000539950 MYLIPQ8WY64 445 aa6.39□□□□□ -1.39
VPS13A-213ENST00000539950 DIRC2Q96SL1 478 aa6.39□□□□□ -1.39
VPS13A-213ENST00000539950 ASPNQ9BXN1 380 aa6.39□□□□□ -1.39
VPS13A-213ENST00000539950 LRRC3Q9BY71 257 aa6.39□□□□□ -1.39
VPS13A-213ENST00000539950 NSUN3Q9H649 340 aaKnown RBP6.39□□□□□ -1.39
VPS13A-213ENST00000539950 SP110Q9HB58 689 aa6.39□□□□□ -1.39
VPS13A-213ENST00000539950 GGT7Q9UJ14 662 aa6.39□□□□□ -1.39
VPS13A-213ENST00000539950 SUPT16HQ9Y5B9 1047 aaKnown RBP6.39□□□□□ -1.39
VPS13A-213ENST00000539950 ROBO2Q9HCK4 1378 aa6.39□□□□□ -1.39
VPS13A-213ENST00000539950 UBOX5O94941 541 aa6.38□□□□□ -1.39
VPS13A-213ENST00000539950 GBP1P32455 592 aa6.38□□□□□ -1.39
VPS13A-213ENST00000539950 ARSHQ5FYA8 562 aa6.38□□□□□ -1.39
VPS13A-213ENST00000539950 BHLHE22Q8NFJ8 381 aaPredicted RBP6.38□□□□□ -1.39
VPS13A-213ENST00000539950 ZNF296Q8WUU4 475 aaPredicted RBP6.38□□□□□ -1.39
VPS13A-213ENST00000539950 ADAMTS1Q9UHI8 967 aa6.38□□□□□ -1.39
VPS13A-213ENST00000539950 RBM47A0AV96 593 aaKnown RBP6.37□□□□□ -1.39
VPS13A-213ENST00000539950 RGS13O14921 159 aa6.37□□□□□ -1.39
VPS13A-213ENST00000539950 ATE1O95260 518 aa6.37□□□□□ -1.39
VPS13A-213ENST00000539950 POLR2BP30876 1174 aaKnown RBP6.37□□□□□ -1.39
VPS13A-213ENST00000539950 TIGD5Q53EQ6 642 aa6.37□□□□□ -1.39
VPS13A-213ENST00000539950 ZNF326Q5BKZ1 582 aaKnown RBP6.37□□□□□ -1.39
VPS13A-213ENST00000539950 SYDE1Q6ZW31 735 aaPredicted RBP6.37□□□□□ -1.39
VPS13A-213ENST00000539950 CILP2Q8IUL8 1156 aa6.37□□□□□ -1.39
VPS13A-213ENST00000539950 C19orf44Q9H6X5 657 aa6.37□□□□□ -1.39
VPS13A-213ENST00000539950 UBP1Q9NZI7 540 aa6.37□□□□□ -1.39
VPS13A-213ENST00000539950 EBF1Q9UH73 591 aa6.37□□□□□ -1.39
VPS13A-213ENST00000539950 KRT1P04264 644 aa6.36□□□□□ -1.39
VPS13A-213ENST00000539950 RAG1P15918 1043 aa6.36□□□□□ -1.39
VPS13A-213ENST00000539950 RAP1GAPP47736 663 aa6.36□□□□□ -1.39
VPS13A-213ENST00000539950 OVOS1Q6IE37 1185 aa6.36□□□□□ -1.39
VPS13A-213ENST00000539950 HS2ST1Q7LGA3 356 aa6.36□□□□□ -1.39
VPS13A-213ENST00000539950 PDZD8Q8NEN9 1154 aa6.36□□□□□ -1.39
VPS13A-213ENST00000539950 RNF32Q9H0A6 362 aa6.36□□□□□ -1.39
VPS13A-213ENST00000539950 GMIPQ9P107 970 aa6.36□□□□□ -1.39
VPS13A-213ENST00000539950 TSPAN15O95858 294 aa6.35□□□□□ -1.39
VPS13A-213ENST00000539950 TEKQ02763 1124 aa6.35□□□□□ -1.39
VPS13A-213ENST00000539950 CLCQ05315 142 aa6.35□□□□□ -1.39
VPS13A-213ENST00000539950 MLECQ14165 292 aa6.35□□□□□ -1.39
VPS13A-213ENST00000539950 SEZ6Q53EL9 994 aa6.35□□□□□ -1.39
VPS13A-213ENST00000539950 LDLRAD1Q5T700 205 aa6.35□□□□□ -1.39
VPS13A-213ENST00000539950 FBXO15Q8NCQ5 510 aaPredicted RBP6.35□□□□□ -1.39
VPS13A-213ENST00000539950 PPP1R16BQ96T49 567 aa6.35□□□□□ -1.39
VPS13A-213ENST00000539950 EHMT1Q9H9B1 1298 aa6.35□□□□□ -1.39
VPS13A-213ENST00000539950 DCP1AQ9NPI6 582 aaPredicted RBP6.35□□□□□ -1.39
VPS13A-213ENST00000539950 C1QTNF9P0C862 333 aa6.34□□□□□ -1.39
VPS13A-213ENST00000539950 CHMP4BP1P59074 171 aa6.34□□□□□ -1.39
VPS13A-213ENST00000539950 NMIQ13287 307 aaPredicted RBP6.34□□□□□ -1.39
VPS13A-213ENST00000539950 CLEC16AQ2KHT3 1053 aa6.34□□□□□ -1.39
VPS13A-213ENST00000539950 LCE1DQ5T752 114 aa6.34□□□□□ -1.39
VPS13A-213ENST00000539950 SPOCD1Q6ZMY3 1216 aa6.34□□□□□ -1.39
VPS13A-213ENST00000539950 GK5Q6ZS86 529 aa6.34□□□□□ -1.39
VPS13A-213ENST00000539950 ANTXR1Q9H6X2 564 aa6.34□□□□□ -1.39
VPS13A-213ENST00000539950 ARID1BQ8NFD5 2236 aaPredicted RBP6.34□□□□□ -1.39
VPS13A-213ENST00000539950 FITM1A5D6W6 292 aa6.33□□□□□ -1.4
VPS13A-213ENST00000539950 APOBRQ0VD83 1088 aa6.33□□□□□ -1.4
VPS13A-213ENST00000539950 SNW1Q13573 536 aaKnown RBP6.33□□□□□ -1.4
VPS13A-213ENST00000539950 CDCP2Q5VXM1 449 aa6.33□□□□□ -1.4
VPS13A-213ENST00000539950 TMC3Q7Z5M5 1100 aa6.33□□□□□ -1.4
VPS13A-213ENST00000539950 OXR1Q8N573 874 aa6.33□□□□□ -1.4
VPS13A-213ENST00000539950 DHX38Q92620 1227 aaKnown RBP6.33□□□□□ -1.4
VPS13A-213ENST00000539950 ATG4CQ96DT6 458 aa6.33□□□□□ -1.4
VPS13A-213ENST00000539950 HDAC8Q9BY41 377 aa6.33□□□□□ -1.4
VPS13A-213ENST00000539950 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP6.33□□□□□ -1.4
VPS13A-213ENST00000539950 EPB41L4BQ9H329 900 aa6.33□□□□□ -1.4
VPS13A-213ENST00000539950 CNNM2Q9H8M5 875 aa6.33□□□□□ -1.4
VPS13A-213ENST00000539950 ZNF16P17020 682 aaPredicted RBP6.32□□□□□ -1.4
VPS13A-213ENST00000539950 CFPP27918 469 aa6.32□□□□□ -1.4
VPS13A-213ENST00000539950 MCM4P33991 863 aa6.32□□□□□ -1.4
VPS13A-213ENST00000539950 RNF4P78317 190 aa6.32□□□□□ -1.4
VPS13A-213ENST00000539950 NBPF12Q5TAG4 269 aaPredicted RBP6.32□□□□□ -1.4
VPS13A-213ENST00000539950 NLRC3Q7RTR2 1065 aa6.32□□□□□ -1.4
VPS13A-213ENST00000539950 LILRA2Q8N149 483 aa6.32□□□□□ -1.4
VPS13A-213ENST00000539950 USHBP1Q8N6Y0 703 aa6.32□□□□□ -1.4
VPS13A-213ENST00000539950 LINC01599Q8WXQ3 324 aa6.32□□□□□ -1.4
VPS13A-213ENST00000539950 SYTL4Q96C24 671 aaPredicted RBP6.32□□□□□ -1.4
VPS13A-213ENST00000539950 G6PC3Q9BUM1 346 aa6.32□□□□□ -1.4
VPS13A-213ENST00000539950 ASCC2Q9H1I8 757 aaPredicted RBP6.32□□□□□ -1.4
VPS13A-213ENST00000539950 ZNF281Q9Y2X9 895 aa6.32□□□□□ -1.4
VPS13A-213ENST00000539950 GALK1P51570 392 aa6.31□□□□□ -1.4
VPS13A-213ENST00000539950 NR0B2Q15466 257 aa6.31□□□□□ -1.4
VPS13A-213ENST00000539950 NBPF9Q3BBW0 867 aa6.31□□□□□ -1.4
VPS13A-213ENST00000539950 C1QL4Q86Z23 238 aa6.31□□□□□ -1.4
VPS13A-213ENST00000539950 REXO1Q8N1G1 1221 aaKnown RBP6.31□□□□□ -1.4
VPS13A-213ENST00000539950 TMEM87AQ8NBN3 555 aa6.31□□□□□ -1.4
VPS13A-213ENST00000539950 DAGLBQ8NCG7 672 aa6.31□□□□□ -1.4
VPS13A-213ENST00000539950 ENOX1Q8TC92 643 aaKnown RBP6.31□□□□□ -1.4
VPS13A-213ENST00000539950 SYTL5Q8TDW5 730 aaPredicted RBP6.31□□□□□ -1.4
VPS13A-213ENST00000539950 TCTN2Q96GX1 697 aa6.31□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms