RNA–Protein interactions for RNA: ENST00000539522.2

CCDC42-202, Transcript of coiled-coil domain containing 42, humanhuman

TSL 1 (best) BASIC

Gene CCDC42, Length 1,087 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42-202ENST00000539522 TTLL1O95922 423 aa15.32■□□□□ 0.04
CCDC42-202ENST00000539522 CETPP11597 493 aa15.32■□□□□ 0.04
CCDC42-202ENST00000539522 LRRC2Q9BYS8 371 aa15.32■□□□□ 0.04
CCDC42-202ENST00000539522 VCPKMTQ9H867 229 aa15.32■□□□□ 0.04
CCDC42-202ENST00000539522 ADGRA2Q96PE1 1338 aa15.32■□□□□ 0.04
CCDC42-202ENST00000539522 COL11A1P12107 1806 aaPredicted RBP15.31■□□□□ 0.04
CCDC42-202ENST00000539522 C19orf81C9J6K1 198 aa15.31■□□□□ 0.04
CCDC42-202ENST00000539522 NDUFB10O96000 172 aa15.31■□□□□ 0.04
CCDC42-202ENST00000539522 VCAM1P19320 739 aa15.31■□□□□ 0.04
CCDC42-202ENST00000539522 ATP2B2Q01814 1243 aa15.31■□□□□ 0.04
CCDC42-202ENST00000539522 USP17L2Q6R6M4 530 aa15.31■□□□□ 0.04
CCDC42-202ENST00000539522 SPICE1Q8N0Z3 855 aa15.31■□□□□ 0.04
CCDC42-202ENST00000539522 PROCA1Q8NCQ7 364 aaPredicted RBP15.31■□□□□ 0.04
CCDC42-202ENST00000539522 NEK1Q96PY6 1258 aa15.31■□□□□ 0.04
CCDC42-202ENST00000539522 NUP88Q99567 741 aaPredicted RBP15.31■□□□□ 0.04
CCDC42-202ENST00000539522 LY9Q9HBG7 655 aa15.31■□□□□ 0.04
CCDC42-202ENST00000539522 WBP1LQ9NX94 342 aa15.31■□□□□ 0.04
CCDC42-202ENST00000539522 F5H6K3 240 aa15.3■□□□□ 0.04
CCDC42-202ENST00000539522 SH2B2O14492 632 aaPredicted RBP15.3■□□□□ 0.04
CCDC42-202ENST00000539522 PRC1O43663 620 aa15.3■□□□□ 0.04
CCDC42-202ENST00000539522 PEX10O60683 326 aa15.3■□□□□ 0.04
CCDC42-202ENST00000539522 KLRC3Q07444 240 aa15.3■□□□□ 0.04
CCDC42-202ENST00000539522 RNF20Q5VTR2 975 aa15.3■□□□□ 0.04
CCDC42-202ENST00000539522 GADL1Q6ZQY3 521 aa15.3■□□□□ 0.04
CCDC42-202ENST00000539522 ANKRD23Q86SG2 305 aa15.3■□□□□ 0.04
CCDC42-202ENST00000539522 DGKHQ86XP1 1220 aa15.3■□□□□ 0.04
CCDC42-202ENST00000539522 GMCL1P1Q8NEA9 526 aa15.3■□□□□ 0.04
CCDC42-202ENST00000539522 JAKMIP1Q96N16 626 aaKnown RBP15.3■□□□□ 0.04
CCDC42-202ENST00000539522 ARHGEF10LQ9HCE6 1279 aa15.3■□□□□ 0.04
CCDC42-202ENST00000539522 ZSWIM6Q9HCJ5 1215 aa15.3■□□□□ 0.04
CCDC42-202ENST00000539522 RNF186Q9NXI6 227 aa15.3■□□□□ 0.04
CCDC42-202ENST00000539522 STX8Q9UNK0 236 aa15.3■□□□□ 0.04
CCDC42-202ENST00000539522 AGTPBP1Q9UPW5 1226 aa15.3■□□□□ 0.04
CCDC42-202ENST00000539522 PDHXO00330 501 aa15.29■□□□□ 0.04
CCDC42-202ENST00000539522 SNHG28P0DPA3 235 aa15.29■□□□□ 0.04
CCDC42-202ENST00000539522 NT5C2P49902 561 aa15.29■□□□□ 0.04
CCDC42-202ENST00000539522 CAP1Q01518 475 aa15.29■□□□□ 0.04
CCDC42-202ENST00000539522 CHMP4CQ96CF2 233 aa15.29■□□□□ 0.04
CCDC42-202ENST00000539522 TTC14Q96N46 770 aa15.29■□□□□ 0.04
CCDC42-202ENST00000539522 FEZ1Q99689 392 aa15.29■□□□□ 0.04
CCDC42-202ENST00000539522 SYNPO2Q9UMS6 1093 aa15.29■□□□□ 0.04
CCDC42-202ENST00000539522 CYP2C8P10632 490 aa15.28■□□□□ 0.04
CCDC42-202ENST00000539522 TOP1P11387 765 aaKnown RBP15.28■□□□□ 0.04
CCDC42-202ENST00000539522 ZKSCAN1P17029 563 aaPredicted RBP15.28■□□□□ 0.04
CCDC42-202ENST00000539522 RPS6KB1P23443 525 aa15.28■□□□□ 0.04
CCDC42-202ENST00000539522 HOXA7P31268 230 aaPredicted RBP15.28■□□□□ 0.04
CCDC42-202ENST00000539522 MCM5P33992 734 aa15.28■□□□□ 0.04
CCDC42-202ENST00000539522 RBM25P49756 843 aaKnown RBP15.28■□□□□ 0.04
CCDC42-202ENST00000539522 INHBEP58166 350 aa15.28■□□□□ 0.04
CCDC42-202ENST00000539522 SREBF2Q12772 1141 aa15.28■□□□□ 0.04
CCDC42-202ENST00000539522 TRDNQ13061 729 aa15.28■□□□□ 0.04
CCDC42-202ENST00000539522 SLC35G1Q2M3R5 365 aa15.28■□□□□ 0.04
CCDC42-202ENST00000539522 CATSPERGQ6ZRH7 1159 aa15.28■□□□□ 0.04
CCDC42-202ENST00000539522 DHX32Q7L7V1 743 aaKnown RBP15.28■□□□□ 0.04
CCDC42-202ENST00000539522 FASTKD5Q7L8L6 764 aaKnown RBP15.28■□□□□ 0.04
CCDC42-202ENST00000539522 RALYLQ86SE5 291 aaKnown RBP15.28■□□□□ 0.04
CCDC42-202ENST00000539522 AGXT2Q9BYV1 514 aa15.28■□□□□ 0.04
CCDC42-202ENST00000539522 TM6SF1Q9BZW5 370 aa15.28■□□□□ 0.04
CCDC42-202ENST00000539522 RPAP3Q9H6T3 665 aaPredicted RBP15.28■□□□□ 0.04
CCDC42-202ENST00000539522 FBXO28Q9NVF7 368 aa15.28■□□□□ 0.04
CCDC42-202ENST00000539522 WDR19Q8NEZ3 1342 aa15.27■□□□□ 0.04
CCDC42-202ENST00000539522 IFIT3O14879 490 aaKnown RBP15.27■□□□□ 0.04
CCDC42-202ENST00000539522 PDHBP11177 359 aa15.27■□□□□ 0.04
CCDC42-202ENST00000539522 CASTP20810 708 aaKnown RBP15.27■□□□□ 0.04
CCDC42-202ENST00000539522 USP14P54578 494 aa15.27■□□□□ 0.04
CCDC42-202ENST00000539522 ANAPC15P60006 121 aa15.27■□□□□ 0.04
CCDC42-202ENST00000539522 CRHR2Q13324 411 aa15.27■□□□□ 0.04
CCDC42-202ENST00000539522 TOB2Q14106 344 aaPredicted RBP15.27■□□□□ 0.04
CCDC42-202ENST00000539522 KRT32Q14532 448 aa15.27■□□□□ 0.04
CCDC42-202ENST00000539522 FAM83BQ5T0W9 1011 aa15.27■□□□□ 0.04
CCDC42-202ENST00000539522 SLFN13Q68D06 897 aa15.27■□□□□ 0.04
CCDC42-202ENST00000539522 IQCA1Q86XH1 822 aa15.27■□□□□ 0.04
CCDC42-202ENST00000539522 CFHR5Q9BXR6 569 aa15.27■□□□□ 0.04
CCDC42-202ENST00000539522 UPF3BQ9BZI7 483 aaKnown RBP15.27■□□□□ 0.04
CCDC42-202ENST00000539522 ASCC2Q9H1I8 757 aaPredicted RBP15.27■□□□□ 0.04
CCDC42-202ENST00000539522 BRPF3Q9ULD4 1205 aa15.27■□□□□ 0.04
CCDC42-202ENST00000539522 SLC45A1Q9Y2W3 748 aa15.27■□□□□ 0.04
CCDC42-202ENST00000539522 CNMDO75829 334 aa15.26■□□□□ 0.03
CCDC42-202ENST00000539522 TBC1D8O95759 1140 aa15.26■□□□□ 0.03
CCDC42-202ENST00000539522 MCCP23508 829 aa15.26■□□□□ 0.03
CCDC42-202ENST00000539522 TROAPQ12815 778 aa15.26■□□□□ 0.03
CCDC42-202ENST00000539522 TMEM67Q5HYA8 995 aa15.26■□□□□ 0.03
CCDC42-202ENST00000539522 TTBK2Q6IQ55 1244 aa15.26■□□□□ 0.03
CCDC42-202ENST00000539522 RUFY3Q7L099 469 aa15.26■□□□□ 0.03
CCDC42-202ENST00000539522 REM2Q8IYK8 340 aaPredicted RBP15.26■□□□□ 0.03
CCDC42-202ENST00000539522 FBXL16Q8N461 479 aa15.26■□□□□ 0.03
CCDC42-202ENST00000539522 PNMA1Q8ND90 353 aa15.26■□□□□ 0.03
CCDC42-202ENST00000539522 LPAR1Q92633 364 aa15.26■□□□□ 0.03
CCDC42-202ENST00000539522 GMCL1Q96IK5 515 aa15.26■□□□□ 0.03
CCDC42-202ENST00000539522 P2RX7Q99572 595 aaKnown RBP15.26■□□□□ 0.03
CCDC42-202ENST00000539522 UBAC1Q9BSL1 405 aa15.26■□□□□ 0.03
CCDC42-202ENST00000539522 MTA3Q9BTC8 594 aa15.26■□□□□ 0.03
CCDC42-202ENST00000539522 C22orf23Q9BZE7 217 aa15.26■□□□□ 0.03
CCDC42-202ENST00000539522 ZCCHC17Q9NP64 241 aaKnown RBP15.26■□□□□ 0.03
CCDC42-202ENST00000539522 TSKSQ9UJT2 592 aa15.26■□□□□ 0.03
CCDC42-202ENST00000539522 WDR46O15213 610 aaKnown RBP15.25■□□□□ 0.03
CCDC42-202ENST00000539522 TRPA1O75762 1119 aa15.25■□□□□ 0.03
CCDC42-202ENST00000539522 LIFRP42702 1097 aa15.25■□□□□ 0.03
CCDC42-202ENST00000539522 WTAPQ15007 396 aa15.25■□□□□ 0.03
CCDC42-202ENST00000539522 BLOC1S2Q6QNY1 142 aa15.25■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms