RNA–Protein interactions for RNA: ENST00000539417.6

RPAIN-206, Transcript of RPA interacting protein, humanhuman

TSL 2

Gene RPAIN, Length 1,471 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPAIN-206ENST00000539417 RBM8AQ9Y5S9 174 aaKnown RBP18.66■□□□□ 0.58
RPAIN-206ENST00000539417 HTTP42858 3142 aa18.66■□□□□ 0.58
RPAIN-206ENST00000539417 BCRP11274 1271 aa18.65■□□□□ 0.58
RPAIN-206ENST00000539417 SP3Q02447 781 aa18.65■□□□□ 0.58
RPAIN-206ENST00000539417 IMMTQ16891 758 aaKnown RBP18.65■□□□□ 0.58
RPAIN-206ENST00000539417 CATSPERGQ6ZRH7 1159 aa18.65■□□□□ 0.58
RPAIN-206ENST00000539417 STOX1Q6ZVD7 989 aa18.65■□□□□ 0.58
RPAIN-206ENST00000539417 RASGRP2Q7LDG7 609 aa18.65■□□□□ 0.58
RPAIN-206ENST00000539417 CHMP4CQ96CF2 233 aa18.65■□□□□ 0.58
RPAIN-206ENST00000539417 CTNNA3Q9UI47 895 aa18.65■□□□□ 0.58
RPAIN-206ENST00000539417 RLFQ13129 1914 aa18.65■□□□□ 0.58
RPAIN-206ENST00000539417 B4E1Z4 1266 aa18.65■□□□□ 0.58
RPAIN-206ENST00000539417 COL9A3Q14050 684 aaPredicted RBP18.65■□□□□ 0.58
RPAIN-206ENST00000539417 ANKRD13CQ8N6S4 541 aa18.65■□□□□ 0.58
RPAIN-206ENST00000539417 NUP88Q99567 741 aaPredicted RBP18.65■□□□□ 0.58
RPAIN-206ENST00000539417 ZKSCAN3Q9BRR0 538 aa18.65■□□□□ 0.58
RPAIN-206ENST00000539417 TXNRD2Q9NNW7 524 aa18.65■□□□□ 0.58
RPAIN-206ENST00000539417 ANO2Q9NQ90 1003 aa18.65■□□□□ 0.58
RPAIN-206ENST00000539417 U3KPZ7 1027 aaPredicted RBP18.65■□□□□ 0.58
RPAIN-206ENST00000539417 RAD21O60216 631 aa18.64■□□□□ 0.57
RPAIN-206ENST00000539417 OSBPP22059 807 aa18.64■□□□□ 0.57
RPAIN-206ENST00000539417 NOVP48745 357 aa18.64■□□□□ 0.57
RPAIN-206ENST00000539417 MKL1Q969V6 931 aa18.64■□□□□ 0.57
RPAIN-206ENST00000539417 USP17L15C9J2P7 530 aa18.63■□□□□ 0.57
RPAIN-206ENST00000539417 USP17L13C9JLJ4 530 aa18.63■□□□□ 0.57
RPAIN-206ENST00000539417 USP17L11C9JVI0 530 aa18.63■□□□□ 0.57
RPAIN-206ENST00000539417 USP17L18D6R9N7 530 aa18.63■□□□□ 0.57
RPAIN-206ENST00000539417 USP17L22D6RA61 530 aa18.63■□□□□ 0.57
RPAIN-206ENST00000539417 USP17L17D6RBQ6 530 aa18.63■□□□□ 0.57
RPAIN-206ENST00000539417 USP17L19D6RCP7 530 aa18.63■□□□□ 0.57
RPAIN-206ENST00000539417 USP17L20D6RJB6 530 aa18.63■□□□□ 0.57
RPAIN-206ENST00000539417 KDM4AO75164 1064 aa18.63■□□□□ 0.57
RPAIN-206ENST00000539417 TTLL1O95922 423 aa18.63■□□□□ 0.57
RPAIN-206ENST00000539417 NDUFB10O96000 172 aa18.63■□□□□ 0.57
RPAIN-206ENST00000539417 HERVK_113P62684 666 aa18.63■□□□□ 0.57
RPAIN-206ENST00000539417 IRX3P78415 501 aaPredicted RBP18.63■□□□□ 0.57
RPAIN-206ENST00000539417 USP17L24Q0WX57 530 aa18.63■□□□□ 0.57
RPAIN-206ENST00000539417 PABPC4Q13310 644 aaKnown RBP eCLIP18.63■□□□□ 0.571e-6■■■■□ 26.3
RPAIN-206ENST00000539417 SMCR8Q8TEV9 937 aaPredicted RBP18.63■□□□□ 0.57
RPAIN-206ENST00000539417 RBPJLQ9UBG7 517 aa18.63■□□□□ 0.57
RPAIN-206ENST00000539417 PNMA3Q9UL41 463 aa18.63■□□□□ 0.57
RPAIN-206ENST00000539417 F5H6K3 240 aa18.62■□□□□ 0.57
RPAIN-206ENST00000539417 LACTBP83111 547 aaPredicted RBP18.62■□□□□ 0.57
RPAIN-206ENST00000539417 KLRC3Q07444 240 aa18.62■□□□□ 0.57
RPAIN-206ENST00000539417 FAM83BQ5T0W9 1011 aa18.62■□□□□ 0.57
RPAIN-206ENST00000539417 RCSD1Q6JBY9 416 aa18.62■□□□□ 0.57
RPAIN-206ENST00000539417 KIAA1211Q6ZU35 1233 aa18.62■□□□□ 0.57
RPAIN-206ENST00000539417 CYB5R4Q7L1T6 521 aa18.62■□□□□ 0.57
RPAIN-206ENST00000539417 RNF41Q9H4P4 317 aaPredicted RBP18.62■□□□□ 0.57
RPAIN-206ENST00000539417 FBXO28Q9NVF7 368 aa18.62■□□□□ 0.57
RPAIN-206ENST00000539417 ZSWIM5Q9P217 1185 aa18.62■□□□□ 0.57
RPAIN-206ENST00000539417 STX8Q9UNK0 236 aa18.62■□□□□ 0.57
RPAIN-206ENST00000539417 PARP14Q460N5 1801 aa18.62■□□□□ 0.57
RPAIN-206ENST00000539417 CNMDO75829 334 aa18.61■□□□□ 0.57
RPAIN-206ENST00000539417 NECTIN1Q15223 517 aa18.61■□□□□ 0.57
RPAIN-206ENST00000539417 Q3C1V9 767 aa18.61■□□□□ 0.57
RPAIN-206ENST00000539417 TANGO6Q9C0B7 1094 aa18.61■□□□□ 0.57
RPAIN-206ENST00000539417 SH2D4AQ9H788 454 aa18.61■□□□□ 0.57
RPAIN-206ENST00000539417 SPDYE16A6NNV3 312 aaPredicted RBP18.6■□□□□ 0.57
RPAIN-206ENST00000539417 E7EWF7 191 aa18.6■□□□□ 0.57
RPAIN-206ENST00000539417 SLC27A2O14975 620 aa18.6■□□□□ 0.57
RPAIN-206ENST00000539417 PCP11498 1178 aaKnown RBP18.6■□□□□ 0.57
RPAIN-206ENST00000539417 OTOP1Q7RTM1 612 aa18.6■□□□□ 0.57
RPAIN-206ENST00000539417 LPAR1Q92633 364 aa18.6■□□□□ 0.57
RPAIN-206ENST00000539417 ESR2Q92731 530 aa18.6■□□□□ 0.57
RPAIN-206ENST00000539417 TCP11L1Q9NUJ3 509 aa18.6■□□□□ 0.57
RPAIN-206ENST00000539417 CENPFP49454 3210 aa18.59■□□□□ 0.57
RPAIN-206ENST00000539417 WDR46O15213 610 aaKnown RBP18.59■□□□□ 0.57
RPAIN-206ENST00000539417 CREB3L3Q68CJ9 461 aa18.59■□□□□ 0.57
RPAIN-206ENST00000539417 SAMD1Q6SPF0 538 aaPredicted RBP18.59■□□□□ 0.57
RPAIN-206ENST00000539417 CTU1Q7Z7A3 348 aaKnown RBP18.59■□□□□ 0.57
RPAIN-206ENST00000539417 ERO1AQ96HE7 468 aa18.59■□□□□ 0.57
RPAIN-206ENST00000539417 TRIM47Q96LD4 638 aa18.59■□□□□ 0.57
RPAIN-206ENST00000539417 TMEM47Q9BQJ4 181 aa18.59■□□□□ 0.57
RPAIN-206ENST00000539417 PAGR1Q9BTK6 254 aa18.59■□□□□ 0.57
RPAIN-206ENST00000539417 MCOLN1Q9GZU1 580 aa18.59■□□□□ 0.57
RPAIN-206ENST00000539417 GOPCQ9HD26 462 aa18.59■□□□□ 0.57
RPAIN-206ENST00000539417 BTBD7Q9P203 1132 aa18.59■□□□□ 0.57
RPAIN-206ENST00000539417 MTMR7Q9Y216 660 aa18.59■□□□□ 0.57
RPAIN-206ENST00000539417 TRIM17Q9Y577 477 aa18.59■□□□□ 0.57
RPAIN-206ENST00000539417 SLFN13Q68D06 897 aa18.58■□□□□ 0.57
RPAIN-206ENST00000539417 CASC1Q6TDU7 716 aa18.58■□□□□ 0.57
RPAIN-206ENST00000539417 GMCL1P1Q8NEA9 526 aa18.58■□□□□ 0.57
RPAIN-206ENST00000539417 ATG4CQ96DT6 458 aa18.58■□□□□ 0.57
RPAIN-206ENST00000539417 MORF4L1Q9UBU8 362 aa18.58■□□□□ 0.57
RPAIN-206ENST00000539417 MGAMO43451 1857 aa18.58■□□□□ 0.56
RPAIN-206ENST00000539417 A0A0G2JMZ2 1700 aa18.58■□□□□ 0.56
RPAIN-206ENST00000539417 FLOT1O75955 427 aa18.58■□□□□ 0.56
RPAIN-206ENST00000539417 MCCP23508 829 aa18.58■□□□□ 0.56
RPAIN-206ENST00000539417 PSMC4P43686 418 aa18.58■□□□□ 0.56
RPAIN-206ENST00000539417 GCLCP48506 637 aaPredicted RBP18.58■□□□□ 0.56
RPAIN-206ENST00000539417 COG2Q14746 738 aa18.58■□□□□ 0.56
RPAIN-206ENST00000539417 FAM110CQ1W6H9 321 aa18.58■□□□□ 0.56
RPAIN-206ENST00000539417 CHST3Q7LGC8 479 aa18.58■□□□□ 0.56
RPAIN-206ENST00000539417 DSG3P32926 999 aa18.57■□□□□ 0.56
RPAIN-206ENST00000539417 ANTXR2P58335 489 aa18.57■□□□□ 0.56
RPAIN-206ENST00000539417 RASEFQ8IZ41 740 aa18.57■□□□□ 0.56
RPAIN-206ENST00000539417 ENAHQ8N8S7 591 aaPredicted RBP18.57■□□□□ 0.56
RPAIN-206ENST00000539417 KRT23Q9C075 422 aa18.57■□□□□ 0.56
RPAIN-206ENST00000539417 PORCNQ9H237 461 aa18.57■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms