RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 TOB2Q14106 344 aaPredicted RBP14.01□□□□□ -0.17
CLIP1-208ENST00000537004 ZYXQ15942 572 aaKnown RBP14.01□□□□□ -0.17
CLIP1-208ENST00000537004 FOXD4L5Q5VV16 416 aaPredicted RBP14.01□□□□□ -0.17
CLIP1-208ENST00000537004 CTR9Q6PD62 1173 aa14.01□□□□□ -0.17
CLIP1-208ENST00000537004 CCDC83Q8IWF9 413 aa14.01□□□□□ -0.17
CLIP1-208ENST00000537004 STK11IPQ8N1F8 1099 aa14.01□□□□□ -0.17
CLIP1-208ENST00000537004 FOXD4L4Q8WXT5 416 aaPredicted RBP14.01□□□□□ -0.17
CLIP1-208ENST00000537004 PARK7Q99497 189 aaKnown RBP14.01□□□□□ -0.17
CLIP1-208ENST00000537004 WDR18Q9BV38 432 aa14.01□□□□□ -0.17
CLIP1-208ENST00000537004 AGTPBP1Q9UPW5 1226 aa14.01□□□□□ -0.17
CLIP1-208ENST00000537004 MYH1P12882 1939 aa14.01□□□□□ -0.17
CLIP1-208ENST00000537004 ADGRA2Q96PE1 1338 aa14.01□□□□□ -0.17
CLIP1-208ENST00000537004 GUCY1A2P33402 732 aa14□□□□□ -0.17
CLIP1-208ENST00000537004 LACTBP83111 547 aaPredicted RBP14□□□□□ -0.17
CLIP1-208ENST00000537004 ABCB5Q2M3G0 1257 aa14□□□□□ -0.17
CLIP1-208ENST00000537004 C12orf60Q5U649 245 aa14□□□□□ -0.17
CLIP1-208ENST00000537004 ACER1Q8TDN7 264 aa14□□□□□ -0.17
CLIP1-208ENST00000537004 GZF1Q9H116 711 aaPredicted RBP14□□□□□ -0.17
CLIP1-208ENST00000537004 AS3MTQ9HBK9 375 aa14□□□□□ -0.17
CLIP1-208ENST00000537004 SMC3Q9UQE7 1217 aa14□□□□□ -0.17
CLIP1-208ENST00000537004 PHIPQ8WWQ0 1821 aa14□□□□□ -0.17
CLIP1-208ENST00000537004 USP17L10C9JJH3 530 aa14□□□□□ -0.17
CLIP1-208ENST00000537004 MPHOSPH10O00566 681 aaKnown RBP14□□□□□ -0.17
CLIP1-208ENST00000537004 ST3GAL1Q11201 340 aa14□□□□□ -0.17
CLIP1-208ENST00000537004 SEPT2Q15019 361 aa14□□□□□ -0.17
CLIP1-208ENST00000537004 FBXO46Q6PJ61 603 aaPredicted RBP14□□□□□ -0.17
CLIP1-208ENST00000537004 STOX1Q6ZVD7 989 aa14□□□□□ -0.17
CLIP1-208ENST00000537004 CLEC10AQ8IUN9 316 aa14□□□□□ -0.17
CLIP1-208ENST00000537004 FOXP2O15409 715 aa13.99□□□□□ -0.17
CLIP1-208ENST00000537004 PEX10O60683 326 aa13.99□□□□□ -0.17
CLIP1-208ENST00000537004 PKN2Q16513 984 aaKnown RBP13.99□□□□□ -0.17
CLIP1-208ENST00000537004 PROCA1Q8NCQ7 364 aaPredicted RBP13.99□□□□□ -0.17
CLIP1-208ENST00000537004 SMCR8Q8TEV9 937 aaPredicted RBP13.99□□□□□ -0.17
CLIP1-208ENST00000537004 EPB41L4AQ9HCS5 686 aaPredicted RBP13.99□□□□□ -0.17
CLIP1-208ENST00000537004 DDX60LQ5H9U9 1706 aaKnown RBP13.99□□□□□ -0.17
CLIP1-208ENST00000537004 TNRC18O15417 2968 aaPredicted RBP13.99□□□□□ -0.17
CLIP1-208ENST00000537004 HMGB1P09429 215 aaKnown RBP13.98□□□□□ -0.17
CLIP1-208ENST00000537004 BCRP11274 1271 aa13.98□□□□□ -0.17
CLIP1-208ENST00000537004 SH3D19Q5HYK7 790 aa13.98□□□□□ -0.17
CLIP1-208ENST00000537004 NECAB1Q8N987 351 aa13.98□□□□□ -0.17
CLIP1-208ENST00000537004 EMILIN3Q9NT22 766 aa13.98□□□□□ -0.17
CLIP1-208ENST00000537004 PTPN22Q9Y2R2 807 aa13.98□□□□□ -0.17
CLIP1-208ENST00000537004 APPP05067 770 aa13.98□□□□□ -0.17
CLIP1-208ENST00000537004 AKR1B1P15121 316 aa13.98□□□□□ -0.17
CLIP1-208ENST00000537004 GJB2P29033 226 aa13.98□□□□□ -0.17
CLIP1-208ENST00000537004 PSMC4P43686 418 aa13.98□□□□□ -0.17
CLIP1-208ENST00000537004 CDK8P49336 464 aa13.98□□□□□ -0.17
CLIP1-208ENST00000537004 ANKRD13CQ8N6S4 541 aa13.98□□□□□ -0.17
CLIP1-208ENST00000537004 TRIM47Q96LD4 638 aa13.98□□□□□ -0.17
CLIP1-208ENST00000537004 ASCC2Q9H1I8 757 aaPredicted RBP13.98□□□□□ -0.17
CLIP1-208ENST00000537004 CABP5Q9NP86 173 aa13.98□□□□□ -0.17
CLIP1-208ENST00000537004 CTNNA3Q9UI47 895 aa13.98□□□□□ -0.17
CLIP1-208ENST00000537004 PTPRFP10586 1907 aa13.97□□□□□ -0.17
CLIP1-208ENST00000537004 A0A1W2PRG0 241 aa13.97□□□□□ -0.17
CLIP1-208ENST00000537004 MINDY4BA8MYZ0 360 aa13.97□□□□□ -0.17
CLIP1-208ENST00000537004 E7EWF7 191 aa13.97□□□□□ -0.17
CLIP1-208ENST00000537004 SOX10P56693 466 aa13.97□□□□□ -0.17
CLIP1-208ENST00000537004 Q6ZUG5 572 aa13.97□□□□□ -0.17
CLIP1-208ENST00000537004 CHAMP1Q96JM3 812 aa13.97□□□□□ -0.17
CLIP1-208ENST00000537004 FEZ1Q99689 392 aa13.97□□□□□ -0.17
CLIP1-208ENST00000537004 LMBRD1Q9NUN5 540 aa13.97□□□□□ -0.17
CLIP1-208ENST00000537004 TMOD4Q9NZQ9 345 aa13.97□□□□□ -0.17
CLIP1-208ENST00000537004 SLC45A1Q9Y2W3 748 aa13.97□□□□□ -0.17
CLIP1-208ENST00000537004 ATAD5Q96QE3 1844 aa13.97□□□□□ -0.17
CLIP1-208ENST00000537004 NAV1Q8NEY1 1877 aa13.97□□□□□ -0.17
CLIP1-208ENST00000537004 BAZ2AQ9UIF9 1905 aaKnown RBP13.97□□□□□ -0.17
CLIP1-208ENST00000537004 ZSWIM8A7E2V4 1837 aa13.97□□□□□ -0.17
CLIP1-208ENST00000537004 STX6O43752 255 aa13.97□□□□□ -0.17
CLIP1-208ENST00000537004 SYT1P21579 422 aa13.97□□□□□ -0.17
CLIP1-208ENST00000537004 C16orf86Q6ZW13 317 aa13.97□□□□□ -0.17
CLIP1-208ENST00000537004 DHX32Q7L7V1 743 aaKnown RBP13.97□□□□□ -0.17
CLIP1-208ENST00000537004 GINM1Q9NU53 330 aa13.97□□□□□ -0.17
CLIP1-208ENST00000537004 PTCH2Q9Y6C5 1203 aa13.97□□□□□ -0.17
CLIP1-208ENST00000537004 FMNL1O95466 1100 aaPredicted RBP13.96□□□□□ -0.17
CLIP1-208ENST00000537004 FGAP02671 866 aa13.96□□□□□ -0.17
CLIP1-208ENST00000537004 TDO2P48775 406 aa13.96□□□□□ -0.17
CLIP1-208ENST00000537004 KIF22Q14807 665 aa13.96□□□□□ -0.17
CLIP1-208ENST00000537004 KLHL40Q2TBA0 621 aa13.96□□□□□ -0.17
CLIP1-208ENST00000537004 AMOTL1Q8IY63 956 aa13.96□□□□□ -0.17
CLIP1-208ENST00000537004 P2RX7Q99572 595 aaKnown RBP13.96□□□□□ -0.17
CLIP1-208ENST00000537004 SWAP70Q9UH65 585 aa13.96□□□□□ -0.17
CLIP1-208ENST00000537004 DDX49Q9Y6V7 483 aaKnown RBP13.96□□□□□ -0.17
CLIP1-208ENST00000537004 MYH15Q9Y2K3 1946 aa13.96□□□□□ -0.18
CLIP1-208ENST00000537004 C19orf81C9J6K1 198 aa13.95□□□□□ -0.18
CLIP1-208ENST00000537004 PATL2C9JE40 543 aaKnown RBP13.95□□□□□ -0.18
CLIP1-208ENST00000537004 MYCP01106 439 aaPredicted RBP13.95□□□□□ -0.18
CLIP1-208ENST00000537004 EXOSC10Q01780 885 aaKnown RBP13.95□□□□□ -0.18
CLIP1-208ENST00000537004 IMMTQ16891 758 aaKnown RBP13.95□□□□□ -0.18
CLIP1-208ENST00000537004 SIAH1Q8IUQ4 282 aa13.95□□□□□ -0.18
CLIP1-208ENST00000537004 IFNL3Q8IZI9 196 aa13.95□□□□□ -0.18
CLIP1-208ENST00000537004 ARPP21Q9UBL0 812 aaPredicted RBP13.95□□□□□ -0.18
CLIP1-208ENST00000537004 DTNBO60941 627 aa13.95□□□□□ -0.18
CLIP1-208ENST00000537004 PRPF40AO75400 957 aaKnown RBP13.95□□□□□ -0.18
CLIP1-208ENST00000537004 PRDM1O75626 825 aa13.95□□□□□ -0.18
CLIP1-208ENST00000537004 ZSCAN22P10073 491 aaPredicted RBP13.95□□□□□ -0.18
CLIP1-208ENST00000537004 IRX3P78415 501 aaPredicted RBP13.95□□□□□ -0.18
CLIP1-208ENST00000537004 FGD1P98174 961 aa13.95□□□□□ -0.18
CLIP1-208ENST00000537004 STK3Q13188 491 aa13.95□□□□□ -0.18
CLIP1-208ENST00000537004 POTEEQ6S8J3 1075 aa13.95□□□□□ -0.18
CLIP1-208ENST00000537004 BRF1Q92994 677 aa13.95□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms