RNA–Protein interactions for RNA: ENST00000533818.5

CSDE1-215, Transcript of cold shock domain containing E1, humanhuman

TSL 4

Gene CSDE1, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-215ENST00000533818 SALL1Q9NSC2 1324 aa13.21□□□□□ -0.29
CSDE1-215ENST00000533818 NPM3O75607 178 aaKnown RBP13.21□□□□□ -0.29
CSDE1-215ENST00000533818 KRT37O76014 449 aa13.21□□□□□ -0.29
CSDE1-215ENST00000533818 CA3P07451 260 aa13.21□□□□□ -0.29
CSDE1-215ENST00000533818 ATP2A2P16615 1042 aaKnown RBP13.21□□□□□ -0.29
CSDE1-215ENST00000533818 CDK7P50613 346 aa13.21□□□□□ -0.29
CSDE1-215ENST00000533818 DZIP1Q86YF9 867 aaKnown RBP13.21□□□□□ -0.29
CSDE1-215ENST00000533818 FAM163AQ96GL9 167 aaPredicted RBP13.21□□□□□ -0.29
CSDE1-215ENST00000533818 GNL3LQ9NVN8 582 aaKnown RBP13.21□□□□□ -0.29
CSDE1-215ENST00000533818 ZNF318Q5VUA4 2279 aa13.2□□□□□ -0.3
CSDE1-215ENST00000533818 LEXMQ3ZCV2 418 aa13.2□□□□□ -0.3
CSDE1-215ENST00000533818 VTI1AQ96AJ9 217 aa13.2□□□□□ -0.3
CSDE1-215ENST00000533818 UBE2ZQ9H832 354 aaPredicted RBP13.2□□□□□ -0.3
CSDE1-215ENST00000533818 PTPRZ1P23471 2315 aaPredicted RBP13.19□□□□□ -0.3
CSDE1-215ENST00000533818 CACNA1BQ00975 2339 aa13.19□□□□□ -0.3
CSDE1-215ENST00000533818 MOXD2PA6NHM9 499 aa13.19□□□□□ -0.3
CSDE1-215ENST00000533818 ZBBXA8MT70 800 aa13.19□□□□□ -0.3
CSDE1-215ENST00000533818 F6X3S4 739 aa13.19□□□□□ -0.3
CSDE1-215ENST00000533818 IL9P15248 144 aa13.19□□□□□ -0.3
CSDE1-215ENST00000533818 RHBDL3P58872 404 aa13.19□□□□□ -0.3
CSDE1-215ENST00000533818 GRB10Q13322 594 aa13.19□□□□□ -0.3
CSDE1-215ENST00000533818 KCNA10Q16322 511 aa13.19□□□□□ -0.3
CSDE1-215ENST00000533818 SHROOM1Q2M3G4 852 aaPredicted RBP13.19□□□□□ -0.3
CSDE1-215ENST00000533818 IER5LQ5T953 404 aa13.19□□□□□ -0.3
CSDE1-215ENST00000533818 LBX2Q6XYB7 198 aa13.19□□□□□ -0.3
CSDE1-215ENST00000533818 CATSPERGQ6ZRH7 1159 aa13.19□□□□□ -0.3
CSDE1-215ENST00000533818 ZGPATQ8N5A5 531 aaKnown RBP13.19□□□□□ -0.3
CSDE1-215ENST00000533818 GADD45GIP1Q8TAE8 222 aaPredicted RBP13.19□□□□□ -0.3
CSDE1-215ENST00000533818 LPIN2Q92539 896 aa13.19□□□□□ -0.3
CSDE1-215ENST00000533818 SUCLG2Q96I99 432 aa13.19□□□□□ -0.3
CSDE1-215ENST00000533818 NRBP1Q9UHY1 535 aa13.19□□□□□ -0.3
CSDE1-215ENST00000533818 ELP1O95163 1332 aa13.18□□□□□ -0.3
CSDE1-215ENST00000533818 TLR3O15455 904 aaKnown RBP13.18□□□□□ -0.3
CSDE1-215ENST00000533818 ADAMTS4O75173 837 aa13.18□□□□□ -0.3
CSDE1-215ENST00000533818 KCNA5P22460 613 aa13.18□□□□□ -0.3
CSDE1-215ENST00000533818 ZYXQ15942 572 aaKnown RBP13.18□□□□□ -0.3
CSDE1-215ENST00000533818 TWISTNBQ3B726 338 aaPredicted RBP13.18□□□□□ -0.3
CSDE1-215ENST00000533818 PTCRAQ6ISU1 281 aaPredicted RBP13.18□□□□□ -0.3
CSDE1-215ENST00000533818 LENG1Q96BZ8 264 aaPredicted RBP13.18□□□□□ -0.3
CSDE1-215ENST00000533818 MAML3Q96JK9 1138 aa13.18□□□□□ -0.3
CSDE1-215ENST00000533818 GLT1D1Q96MS3 346 aa13.18□□□□□ -0.3
CSDE1-215ENST00000533818 PRRX2Q99811 253 aa13.18□□□□□ -0.3
CSDE1-215ENST00000533818 MOV10L1Q9BXT6 1211 aaKnown RBP13.18□□□□□ -0.3
CSDE1-215ENST00000533818 PI4KBQ9UBF8 816 aa13.18□□□□□ -0.3
CSDE1-215ENST00000533818 DENND2AQ9ULE3 1009 aa13.18□□□□□ -0.3
CSDE1-215ENST00000533818 MROH7-TTC4A0A0A0MT08 1334 aa13.17□□□□□ -0.3
CSDE1-215ENST00000533818 GBF1Q92538 1859 aa13.17□□□□□ -0.3
CSDE1-215ENST00000533818 GPR75-ASB3A0A0A6YYF3 556 aa13.17□□□□□ -0.3
CSDE1-215ENST00000533818 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP13.17□□□□□ -0.3
CSDE1-215ENST00000533818 GDF11O95390 407 aa13.17□□□□□ -0.3
CSDE1-215ENST00000533818 KAZALD1Q96I82 304 aa13.17□□□□□ -0.3
CSDE1-215ENST00000533818 GINM1Q9NU53 330 aa13.17□□□□□ -0.3
CSDE1-215ENST00000533818 ABCF2Q9UG63 623 aa13.17□□□□□ -0.3
CSDE1-215ENST00000533818 A0A0G2JMZ2 1700 aa13.16□□□□□ -0.3
CSDE1-215ENST00000533818 GRXCR2A6NFK2 248 aa13.16□□□□□ -0.3
CSDE1-215ENST00000533818 ARVCFO00192 962 aa13.16□□□□□ -0.3
CSDE1-215ENST00000533818 AKR1A1P14550 325 aa13.16□□□□□ -0.3
CSDE1-215ENST00000533818 TAL1P17542 331 aaPredicted RBP13.16□□□□□ -0.3
CSDE1-215ENST00000533818 ERCC3P19447 782 aa13.16□□□□□ -0.3
CSDE1-215ENST00000533818 CCL23P55773 120 aa13.16□□□□□ -0.3
CSDE1-215ENST00000533818 TAP1Q03518 808 aa13.16□□□□□ -0.3
CSDE1-215ENST00000533818 TCF15Q12870 199 aa13.16□□□□□ -0.3
CSDE1-215ENST00000533818 WDR43Q15061 677 aaKnown RBP eCLIP13.16□□□□□ -0.3
CSDE1-215ENST00000533818 CCSAPQ6IQ19 270 aaPredicted RBP13.16□□□□□ -0.3
CSDE1-215ENST00000533818 FAM126BQ8IXS8 530 aa13.16□□□□□ -0.3
CSDE1-215ENST00000533818 RPUSD2Q8IZ73 545 aaKnown RBP13.16□□□□□ -0.3
CSDE1-215ENST00000533818 KLHDC9Q8NEP7 349 aa13.16□□□□□ -0.3
CSDE1-215ENST00000533818 KLHDC4Q8TBB5 520 aa13.16□□□□□ -0.3
CSDE1-215ENST00000533818 TSR2Q969E8 191 aaKnown RBP13.16□□□□□ -0.3
CSDE1-215ENST00000533818 C12orf42Q96LP6 360 aa13.16□□□□□ -0.3
CSDE1-215ENST00000533818 FEZ1Q99689 392 aa13.16□□□□□ -0.3
CSDE1-215ENST00000533818 HIPK3Q9H422 1215 aa13.16□□□□□ -0.3
CSDE1-215ENST00000533818 FAM86C1Q9NVL1 165 aa13.16□□□□□ -0.3
CSDE1-215ENST00000533818 ZBTB21Q9ULJ3 1066 aa13.16□□□□□ -0.3
CSDE1-215ENST00000533818 ATAD5Q96QE3 1844 aa13.16□□□□□ -0.3
CSDE1-215ENST00000533818 ZNF536O15090 1300 aa13.15□□□□□ -0.3
CSDE1-215ENST00000533818 BRWD1Q9NSI6 2320 aa13.15□□□□□ -0.3
CSDE1-215ENST00000533818 SPDYE16A6NNV3 312 aaPredicted RBP13.15□□□□□ -0.3
CSDE1-215ENST00000533818 SEMA3EO15041 775 aa13.15□□□□□ -0.3
CSDE1-215ENST00000533818 LPXNO60711 386 aa13.15□□□□□ -0.3
CSDE1-215ENST00000533818 SPTY2D1Q68D10 685 aaPredicted RBP13.15□□□□□ -0.3
CSDE1-215ENST00000533818 ABRAQ8N0Z2 381 aa13.15□□□□□ -0.3
CSDE1-215ENST00000533818 BICC1Q9H694 974 aaKnown RBP13.15□□□□□ -0.3
CSDE1-215ENST00000533818 ADAMTS8Q9UP79 889 aa13.15□□□□□ -0.3
CSDE1-215ENST00000533818 UMODL1Q5DID0 1318 aa13.14□□□□□ -0.31
CSDE1-215ENST00000533818 SYNRGQ9UMZ2 1314 aa13.14□□□□□ -0.31
CSDE1-215ENST00000533818 TRIOO75962 3097 aa13.14□□□□□ -0.31
CSDE1-215ENST00000533818 A0A0U1RQG5 324 aaPredicted RBP13.14□□□□□ -0.31
CSDE1-215ENST00000533818 ARHGEF15O94989 841 aa13.14□□□□□ -0.31
CSDE1-215ENST00000533818 MAP4K4O95819 1239 aaPredicted RBP13.14□□□□□ -0.31
CSDE1-215ENST00000533818 VCAM1P19320 739 aa13.14□□□□□ -0.31
CSDE1-215ENST00000533818 ID4P47928 161 aa13.14□□□□□ -0.31
CSDE1-215ENST00000533818 PUS10Q3MIT2 529 aaKnown RBP13.14□□□□□ -0.31
CSDE1-215ENST00000533818 CRACR2BQ8N4Y2 399 aaPredicted RBP13.14□□□□□ -0.31
CSDE1-215ENST00000533818 SHCBP1Q8NEM2 672 aa13.14□□□□□ -0.31
CSDE1-215ENST00000533818 TRIM34Q9BYJ4 488 aa13.14□□□□□ -0.31
CSDE1-215ENST00000533818 UPF3BQ9BZI7 483 aaKnown RBP13.14□□□□□ -0.31
CSDE1-215ENST00000533818 SPATC1LQ9H0A9 340 aa13.14□□□□□ -0.31
CSDE1-215ENST00000533818 LMCD1Q9NZU5 365 aa13.14□□□□□ -0.31
CSDE1-215ENST00000533818 MYH2Q9UKX2 1941 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 66.7 ms