RNA–Protein interactions for RNA: ENST00000532661.5

LTBP3-220, Transcript of latent transforming growth factor beta binding protein 3, human

TSL 3

Gene LTBP3, Length 748 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LTBP3-220	ENST00000532661	ZFY	P08048	801 aa	Predicted RBP	27.6	■■■□□ 2.01
LTBP3-220	ENST00000532661	XRCC5	P13010	732 aa	Known RBP	27.6	■■■□□ 2.01
LTBP3-220	ENST00000532661	CCNA1	P78396	465 aa		27.6	■■■□□ 2.01
LTBP3-220	ENST00000532661	COG2	Q14746	738 aa		27.6	■■■□□ 2.01
LTBP3-220	ENST00000532661	SBK1	Q52WX2	424 aa		27.6	■■■□□ 2.01
LTBP3-220	ENST00000532661	WDR78	Q5VTH9	848 aa		27.6	■■■□□ 2.01
LTBP3-220	ENST00000532661	CWC22	Q9HCG8	908 aa	Known RBP	27.6	■■■□□ 2.01
LTBP3-220	ENST00000532661	HMX1	Q9NP08	348 aa	Predicted RBP	27.6	■■■□□ 2.01
LTBP3-220	ENST00000532661	RPTOR	Q8N122	1335 aa		27.6	■■■□□ 2.01
LTBP3-220	ENST00000532661	MINDY4B	A8MYZ0	360 aa		27.59	■■■□□ 2.01
LTBP3-220	ENST00000532661	ERC2	O15083	957 aa		27.59	■■■□□ 2.01
LTBP3-220	ENST00000532661	GLRX3	O76003	335 aa	Known RBP	27.59	■■■□□ 2.01
LTBP3-220	ENST00000532661	SEC62	Q99442	399 aa	Known RBP	27.59	■■■□□ 2.01
LTBP3-220	ENST00000532661	VCPKMT	Q9H867	229 aa		27.59	■■■□□ 2.01
LTBP3-220	ENST00000532661	EPB41L4A	Q9HCS5	686 aa	Predicted RBP	27.59	■■■□□ 2.01
LTBP3-220	ENST00000532661	EEF2	P13639	858 aa	Known RBP	27.58	■■■□□ 2.01
LTBP3-220	ENST00000532661	PRKAR2A	P13861	404 aa	Known RBP	27.58	■■■□□ 2.01
LTBP3-220	ENST00000532661	MX1	P20591	662 aa		27.58	■■■□□ 2.01
LTBP3-220	ENST00000532661	RGS2	P41220	211 aa		27.58	■■■□□ 2.01
LTBP3-220	ENST00000532661	ATP2B2	Q01814	1243 aa		27.58	■■■□□ 2.01
LTBP3-220	ENST00000532661	MAP3K21	Q5TCX8	1036 aa		27.58	■■■□□ 2.01
LTBP3-220	ENST00000532661	ANKRD45	Q5TZF3	282 aa		27.58	■■■□□ 2.01
LTBP3-220	ENST00000532661	GNL3	Q9BVP2	549 aa	Known RBP eCLIP	27.58	■■■□□ 2.01
LTBP3-220	ENST00000532661	HOXC10	Q9NYD6	342 aa		27.58	■■■□□ 2.01
LTBP3-220	ENST00000532661	SALL3	Q9BXA9	1300 aa		27.58	■■■□□ 2.01
LTBP3-220	ENST00000532661	ZKSCAN1	P17029	563 aa	Predicted RBP	27.57	■■■□□ 2
LTBP3-220	ENST00000532661	GIMAP6	Q6P9H5	292 aa		27.57	■■■□□ 2
LTBP3-220	ENST00000532661	LPAR1	Q92633	364 aa		27.57	■■■□□ 2
LTBP3-220	ENST00000532661	GCC1	Q96CN9	775 aa		27.57	■■■□□ 2
LTBP3-220	ENST00000532661	PTPRE	P23469	700 aa		27.56	■■■□□ 2
LTBP3-220	ENST00000532661	MAP2K5	Q13163	448 aa		27.56	■■■□□ 2
LTBP3-220	ENST00000532661	FSD1	Q9BTV5	496 aa		27.56	■■■□□ 2
LTBP3-220	ENST00000532661	SH2D4A	Q9H788	454 aa		27.56	■■■□□ 2
LTBP3-220	ENST00000532661	KANSL2	Q9H9L4	492 aa		27.56	■■■□□ 2
LTBP3-220	ENST00000532661	APP	P05067	770 aa		27.55	■■■□□ 2
LTBP3-220	ENST00000532661	RASA1	P20936	1047 aa		27.55	■■■□□ 2
LTBP3-220	ENST00000532661	DSG3	P32926	999 aa		27.55	■■■□□ 2
LTBP3-220	ENST00000532661	CACNB2	Q08289	660 aa	Predicted RBP	27.55	■■■□□ 2
LTBP3-220	ENST00000532661	TRMT44	Q8IYL2	757 aa	Known RBP	27.55	■■■□□ 2
LTBP3-220	ENST00000532661	DIS3L	Q8TF46	1054 aa	Known RBP	27.55	■■■□□ 2
LTBP3-220	ENST00000532661	PAWR	Q96IZ0	340 aa	Known RBP	27.55	■■■□□ 2
LTBP3-220	ENST00000532661	APBA2	Q99767	749 aa		27.55	■■■□□ 2
LTBP3-220	ENST00000532661	HTATIP2	Q9BUP3	242 aa		27.55	■■■□□ 2
LTBP3-220	ENST00000532661	MOV10L1	Q9BXT6	1211 aa	Known RBP	27.55	■■■□□ 2
LTBP3-220	ENST00000532661	SLC15A5	A6NIM6	579 aa		27.54	■■■□□ 2
LTBP3-220	ENST00000532661	MYH8	P13535	1937 aa		27.54	■■■□□ 2
LTBP3-220	ENST00000532661	GNAT2	P19087	354 aa		27.54	■■■□□ 2
LTBP3-220	ENST00000532661	TDO2	P48775	406 aa		27.54	■■■□□ 2
LTBP3-220	ENST00000532661	HABP4	Q5JVS0	413 aa	Known RBP	27.54	■■■□□ 2
LTBP3-220	ENST00000532661	SAMD1	Q6SPF0	538 aa	Predicted RBP	27.54	■■■□□ 2
LTBP3-220	ENST00000532661	ATG4C	Q96DT6	458 aa		27.54	■■■□□ 2
LTBP3-220	ENST00000532661	MKNK2	Q9HBH9	465 aa		27.54	■■■□□ 2
LTBP3-220	ENST00000532661	FLRT1	Q9NZU1	646 aa		27.54	■■■□□ 2
LTBP3-220	ENST00000532661	PATL2	C9JE40	543 aa	Known RBP	27.53	■■■□□ 2
LTBP3-220	ENST00000532661	FLOT1	O75955	427 aa		27.53	■■■□□ 2
LTBP3-220	ENST00000532661	CAPN2	P17655	700 aa		27.53	■■■□□ 2
LTBP3-220	ENST00000532661	HDAC1	Q13547	482 aa	Predicted RBP	27.53	■■■□□ 2
LTBP3-220	ENST00000532661	LRRFIP1	Q32MZ4	808 aa	Known RBP	27.53	■■■□□ 2
LTBP3-220	ENST00000532661	IFNL3	Q8IZI9	196 aa		27.53	■■■□□ 2
LTBP3-220	ENST00000532661	SPATC1L	Q9H0A9	340 aa		27.53	■■■□□ 2
LTBP3-220	ENST00000532661	WDR46	O15213	610 aa	Known RBP	27.52	■■■□□ 2
LTBP3-220	ENST00000532661	CCND3	P30281	292 aa	Predicted RBP	27.52	■■■□□ 2
LTBP3-220	ENST00000532661	GRB14	Q14449	540 aa		27.52	■■■□□ 2
LTBP3-220	ENST00000532661	ZMYM1	Q5SVZ6	1142 aa		27.52	■■■□□ 2
LTBP3-220	ENST00000532661	NPLOC4	Q8TAT6	608 aa		27.52	■■■□□ 2
LTBP3-220	ENST00000532661	FBXO28	Q9NVF7	368 aa		27.52	■■■□□ 2
LTBP3-220	ENST00000532661	ZBTB47	Q9UFB7	747 aa	Predicted RBP	27.52	■■■□□ 2
LTBP3-220	ENST00000532661	COLQ	Q9Y215	455 aa	Predicted RBP	27.52	■■■□□ 2
LTBP3-220	ENST00000532661	IVNS1ABP	Q9Y6Y0	642 aa		27.52	■■■□□ 2
LTBP3-220	ENST00000532661	ROBO3	Q96MS0	1386 aa		27.51	■■□□□ 1.99
LTBP3-220	ENST00000532661	RAD21	O60216	631 aa		27.51	■■□□□ 1.99
LTBP3-220	ENST00000532661	PRDM1	O75626	825 aa		27.51	■■□□□ 1.99
LTBP3-220	ENST00000532661	MNX1	P50219	401 aa	Predicted RBP	27.51	■■□□□ 1.99
LTBP3-220	ENST00000532661	RLF	Q13129	1914 aa		27.51	■■□□□ 1.99
LTBP3-220	ENST00000532661	PLS1	Q14651	629 aa		27.5	■■□□□ 1.99
LTBP3-220	ENST00000532661	OGDHL	Q9ULD0	1010 aa		27.5	■■□□□ 1.99
LTBP3-220	ENST00000532661	CEP290	O15078	2479 aa		27.49	■■□□□ 1.99
LTBP3-220	ENST00000532661	ERCC3	P19447	782 aa		27.49	■■□□□ 1.99
LTBP3-220	ENST00000532661	NECAB2	Q7Z6G3	386 aa		27.49	■■□□□ 1.99
LTBP3-220	ENST00000532661	MB21D1	Q8N884	522 aa		27.49	■■□□□ 1.99
LTBP3-220	ENST00000532661	ANKLE1	Q8NAG6	615 aa		27.49	■■□□□ 1.99
LTBP3-220	ENST00000532661	GOPC	Q9HD26	462 aa		27.49	■■□□□ 1.99
LTBP3-220	ENST00000532661	STAP2	Q9UGK3	403 aa		27.49	■■□□□ 1.99
LTBP3-220	ENST00000532661	HOXC6	P09630	235 aa		27.48	■■□□□ 1.99
LTBP3-220	ENST00000532661	PDE1A	P54750	535 aa		27.48	■■□□□ 1.99
LTBP3-220	ENST00000532661	FAM83B	Q5T0W9	1011 aa		27.48	■■□□□ 1.99
LTBP3-220	ENST00000532661	CCDC129	Q6ZRS4	1044 aa		27.48	■■□□□ 1.99
LTBP3-220	ENST00000532661	ADORA2A	P29274	412 aa		27.47	■■□□□ 1.99
LTBP3-220	ENST00000532661	TMEM132B	Q14DG7	1078 aa		27.47	■■□□□ 1.99
LTBP3-220	ENST00000532661	LHX8	Q68G74	356 aa		27.47	■■□□□ 1.99
LTBP3-220	ENST00000532661	ZNF444	Q8N0Y2	327 aa	Predicted RBP	27.47	■■□□□ 1.99
LTBP3-220	ENST00000532661	SHCBP1	Q8NEM2	672 aa		27.47	■■□□□ 1.99
LTBP3-220	ENST00000532661	NUP88	Q99567	741 aa	Predicted RBP	27.47	■■□□□ 1.99
LTBP3-220	ENST00000532661	NYAP2	Q9P242	653 aa		27.47	■■□□□ 1.99
LTBP3-220	ENST00000532661		A0A0G2JMZ2	1700 aa		27.47	■■□□□ 1.99
LTBP3-220	ENST00000532661	IGKV6D-41	A0A0C4DH26	115 aa		27.46	■■□□□ 1.99
LTBP3-220	ENST00000532661	FOXP2	O15409	715 aa		27.46	■■□□□ 1.99
LTBP3-220	ENST00000532661	MFSD14C	Q5VZR4	134 aa		27.46	■■□□□ 1.99
LTBP3-220	ENST00000532661	CHRDL2	Q6WN34	429 aa		27.46	■■□□□ 1.99
LTBP3-220	ENST00000532661	NCAPG2	Q86XI2	1143 aa		27.46	■■□□□ 1.99

Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms