RNA–Protein interactions for RNA: ENST00000531480.2

CPSF1-206, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 789 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-206ENST00000531480 KDM4AO75164 1064 aa17.08■□□□□ 0.32
CPSF1-206ENST00000531480 DGKZQ13574 1117 aa17.08■□□□□ 0.32
CPSF1-206ENST00000531480 C8orf34Q49A92 452 aa17.08■□□□□ 0.32
CPSF1-206ENST00000531480 RRP12Q5JTH9 1297 aaKnown RBP17.08■□□□□ 0.32
CPSF1-206ENST00000531480 KIAA1755Q5JYT7 1200 aa17.08■□□□□ 0.32
CPSF1-206ENST00000531480 TREML2Q5T2D2 321 aa17.08■□□□□ 0.32
CPSF1-206ENST00000531480 TTC14Q96N46 770 aa17.08■□□□□ 0.32
CPSF1-206ENST00000531480 ZSWIM5Q9P217 1185 aa17.08■□□□□ 0.32
CPSF1-206ENST00000531480 PDHXO00330 501 aa17.07■□□□□ 0.32
CPSF1-206ENST00000531480 NMT2O60551 498 aa17.07■□□□□ 0.32
CPSF1-206ENST00000531480 VCAM1P19320 739 aa17.07■□□□□ 0.32
CPSF1-206ENST00000531480 RNF20Q5VTR2 975 aa17.07■□□□□ 0.32
CPSF1-206ENST00000531480 DGKHQ86XP1 1220 aa17.07■□□□□ 0.32
CPSF1-206ENST00000531480 MB21D2Q8IYB1 491 aaPredicted RBP17.07■□□□□ 0.32
CPSF1-206ENST00000531480 GMCL1P1Q8NEA9 526 aa17.07■□□□□ 0.32
CPSF1-206ENST00000531480 NCOA7Q8NI08 942 aa17.07■□□□□ 0.32
CPSF1-206ENST00000531480 FEZ1Q99689 392 aa17.07■□□□□ 0.32
CPSF1-206ENST00000531480 MTA3Q9BTC8 594 aa17.07■□□□□ 0.32
CPSF1-206ENST00000531480 TOMM22Q9NS69 142 aa17.07■□□□□ 0.32
CPSF1-206ENST00000531480 TMOD4Q9NZQ9 345 aa17.07■□□□□ 0.32
CPSF1-206ENST00000531480 CLIP2Q9UDT6 1046 aa17.07■□□□□ 0.32
CPSF1-206ENST00000531480 EIF5BO60841 1220 aaKnown RBP17.06■□□□□ 0.32
CPSF1-206ENST00000531480 TRPA1O75762 1119 aa17.06■□□□□ 0.32
CPSF1-206ENST00000531480 CCDC178Q5BJE1 867 aa17.06■□□□□ 0.32
CPSF1-206ENST00000531480 GADL1Q6ZQY3 521 aa17.06■□□□□ 0.32
CPSF1-206ENST00000531480 RASEFQ8IZ41 740 aa17.06■□□□□ 0.32
CPSF1-206ENST00000531480 A0A0G2JMZ2 1700 aa17.05■□□□□ 0.32
CPSF1-206ENST00000531480 TRDNQ13061 729 aa17.05■□□□□ 0.32
CPSF1-206ENST00000531480 PABPC4Q13310 644 aaKnown RBP eCLIP17.05■□□□□ 0.323e-6■■■□□ 17
CPSF1-206ENST00000531480 CRHR2Q13324 411 aa17.05■□□□□ 0.32
CPSF1-206ENST00000531480 SEC23AQ15436 765 aa17.05■□□□□ 0.32
CPSF1-206ENST00000531480 CATSPERGQ6ZRH7 1159 aa17.05■□□□□ 0.32
CPSF1-206ENST00000531480 CYB5R4Q7L1T6 521 aa17.05■□□□□ 0.32
CPSF1-206ENST00000531480 IQCA1Q86XH1 822 aa17.05■□□□□ 0.32
CPSF1-206ENST00000531480 IL17RAQ96F46 866 aa17.05■□□□□ 0.32
CPSF1-206ENST00000531480 ZSCAN10Q96SZ4 725 aaPredicted RBP17.05■□□□□ 0.32
CPSF1-206ENST00000531480 R3HDMLQ9H3Y0 253 aa17.05■□□□□ 0.32
CPSF1-206ENST00000531480 GOPCQ9HD26 462 aa17.05■□□□□ 0.32
CPSF1-206ENST00000531480 F5H6K3 240 aa17.04■□□□□ 0.32
CPSF1-206ENST00000531480 WDR46O15213 610 aaKnown RBP17.04■□□□□ 0.32
CPSF1-206ENST00000531480 TLR2O60603 784 aa17.04■□□□□ 0.32
CPSF1-206ENST00000531480 ANTXR2P58335 489 aa17.04■□□□□ 0.32
CPSF1-206ENST00000531480 KLRC3Q07444 240 aa17.04■□□□□ 0.32
CPSF1-206ENST00000531480 TAF1CQ15572 869 aaPredicted RBP17.04■□□□□ 0.32
CPSF1-206ENST00000531480 ZYXQ15942 572 aaKnown RBP17.04■□□□□ 0.32
CPSF1-206ENST00000531480 LBX2Q6XYB7 198 aa17.04■□□□□ 0.32
CPSF1-206ENST00000531480 ENAHQ8N8S7 591 aaPredicted RBP17.04■□□□□ 0.32
CPSF1-206ENST00000531480 PARK7Q99497 189 aaKnown RBP17.04■□□□□ 0.32
CPSF1-206ENST00000531480 TMEM47Q9BQJ4 181 aa17.04■□□□□ 0.32
CPSF1-206ENST00000531480 ASCC2Q9H1I8 757 aaPredicted RBP17.04■□□□□ 0.32
CPSF1-206ENST00000531480 PNMA3Q9UL41 463 aa17.04■□□□□ 0.32
CPSF1-206ENST00000531480 STX8Q9UNK0 236 aa17.04■□□□□ 0.32
CPSF1-206ENST00000531480 WDR19Q8NEZ3 1342 aa17.03■□□□□ 0.32
CPSF1-206ENST00000531480 USP17L15C9J2P7 530 aa17.03■□□□□ 0.32
CPSF1-206ENST00000531480 USP17L13C9JLJ4 530 aa17.03■□□□□ 0.32
CPSF1-206ENST00000531480 USP17L11C9JVI0 530 aa17.03■□□□□ 0.32
CPSF1-206ENST00000531480 USP17L18D6R9N7 530 aa17.03■□□□□ 0.32
CPSF1-206ENST00000531480 USP17L22D6RA61 530 aa17.03■□□□□ 0.32
CPSF1-206ENST00000531480 USP17L17D6RBQ6 530 aa17.03■□□□□ 0.32
CPSF1-206ENST00000531480 USP17L19D6RCP7 530 aa17.03■□□□□ 0.32
CPSF1-206ENST00000531480 USP17L20D6RJB6 530 aa17.03■□□□□ 0.32
CPSF1-206ENST00000531480 NDUFB10O96000 172 aa17.03■□□□□ 0.32
CPSF1-206ENST00000531480 TOP1P11387 765 aaKnown RBP17.03■□□□□ 0.32
CPSF1-206ENST00000531480 ZKSCAN1P17029 563 aaPredicted RBP17.03■□□□□ 0.32
CPSF1-206ENST00000531480 USP17L24Q0WX57 530 aa17.03■□□□□ 0.32
CPSF1-206ENST00000531480 COL9A3Q14050 684 aaPredicted RBP17.03■□□□□ 0.32
CPSF1-206ENST00000531480 KRT32Q14532 448 aa17.03■□□□□ 0.32
CPSF1-206ENST00000531480 C17orf99Q6UX52 265 aa17.03■□□□□ 0.32
CPSF1-206ENST00000531480 RALYLQ86SE5 291 aaKnown RBP17.03■□□□□ 0.32
CPSF1-206ENST00000531480 GMCL1Q96IK5 515 aa17.03■□□□□ 0.32
CPSF1-206ENST00000531480 ZFYVE28Q9HCC9 887 aa17.03■□□□□ 0.32
CPSF1-206ENST00000531480 SNX14Q9Y5W7 946 aa17.03■□□□□ 0.32
CPSF1-206ENST00000531480 TNKSO95271 1327 aa17.02■□□□□ 0.32
CPSF1-206ENST00000531480 MYPNQ86TC9 1320 aa17.02■□□□□ 0.32
CPSF1-206ENST00000531480 SEC24BO95487 1268 aa17.02■□□□□ 0.32
CPSF1-206ENST00000531480 TBC1D8O95759 1140 aa17.02■□□□□ 0.32
CPSF1-206ENST00000531480 SNHG28P0DPA3 235 aa17.02■□□□□ 0.32
CPSF1-206ENST00000531480 CYP2C8P10632 490 aa17.02■□□□□ 0.32
CPSF1-206ENST00000531480 BCRP11274 1271 aa17.02■□□□□ 0.32
CPSF1-206ENST00000531480 ATP2B2Q01814 1243 aa17.02■□□□□ 0.32
CPSF1-206ENST00000531480 ADCK5Q3MIX3 580 aa17.02■□□□□ 0.32
CPSF1-206ENST00000531480 POTEEQ6S8J3 1075 aa17.02■□□□□ 0.32
CPSF1-206ENST00000531480 LRRC47Q8N1G4 583 aaKnown RBP17.02■□□□□ 0.32
CPSF1-206ENST00000531480 IGDCC4Q8TDY8 1250 aa17.02■□□□□ 0.32
CPSF1-206ENST00000531480 ABHD8Q96I13 439 aa17.02■□□□□ 0.32
CPSF1-206ENST00000531480 RPAP3Q9H6T3 665 aaPredicted RBP17.02■□□□□ 0.32
CPSF1-206ENST00000531480 OSBPP22059 807 aa17.01■□□□□ 0.31
CPSF1-206ENST00000531480 EXOSC10Q01780 885 aaKnown RBP17.01■□□□□ 0.31
CPSF1-206ENST00000531480 SPICE1Q8N0Z3 855 aa17.01■□□□□ 0.31
CPSF1-206ENST00000531480 ZKSCAN3Q9BRR0 538 aa17.01■□□□□ 0.31
CPSF1-206ENST00000531480 UBAC1Q9BSL1 405 aa17.01■□□□□ 0.31
CPSF1-206ENST00000531480 ADAMTS5Q9UNA0 930 aa17.01■□□□□ 0.31
CPSF1-206ENST00000531480 GPR25O00155 361 aa17■□□□□ 0.31
CPSF1-206ENST00000531480 PLA2G6O60733 806 aa17■□□□□ 0.31
CPSF1-206ENST00000531480 MCM5P33992 734 aa17■□□□□ 0.31
CPSF1-206ENST00000531480 GCLCP48506 637 aaPredicted RBP17■□□□□ 0.31
CPSF1-206ENST00000531480 HERVK_113P62684 666 aa17■□□□□ 0.31
CPSF1-206ENST00000531480 GTF3C2Q8WUA4 911 aaPredicted RBP17■□□□□ 0.31
CPSF1-206ENST00000531480 NEK1Q96PY6 1258 aa17■□□□□ 0.31
CPSF1-206ENST00000531480 P2RX7Q99572 595 aaKnown RBP17■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms