RNA–Protein interactions for RNA: ENST00000531141.1

CD44-233, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 537 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-233ENST00000531141 LRP8Q14114 963 aa6.03□□□□□ -1.44
CD44-233ENST00000531141 BBS9Q3SYG4 887 aa6.03□□□□□ -1.44
CD44-233ENST00000531141 UNC5AQ6ZN44 842 aa6.03□□□□□ -1.44
CD44-233ENST00000531141 VSIG10LQ86VR7 867 aa6.03□□□□□ -1.44
CD44-233ENST00000531141 SPACA3Q8IXA5 215 aa6.03□□□□□ -1.44
CD44-233ENST00000531141 PLD6Q8N2A8 252 aaKnown RBP6.03□□□□□ -1.44
CD44-233ENST00000531141 FBXL18Q96ME1 805 aa6.03□□□□□ -1.44
CD44-233ENST00000531141 BSDC1Q9NW68 430 aaPredicted RBP6.03□□□□□ -1.44
CD44-233ENST00000531141 SUCOQ9UBS9 1254 aaKnown RBP6.03□□□□□ -1.44
CD44-233ENST00000531141 ZC3H7BQ9UGR2 993 aaKnown RBP6.03□□□□□ -1.44
CD44-233ENST00000531141 KCNH3Q9ULD8 1083 aa6.03□□□□□ -1.44
CD44-233ENST00000531141 MRVI1Q9Y6F6 885 aa6.03□□□□□ -1.44
CD44-233ENST00000531141 A0A1W2PQH9 124 aa6.02□□□□□ -1.45
CD44-233ENST00000531141 FAM86C2PA6NEL3 165 aa6.02□□□□□ -1.45
CD44-233ENST00000531141 PRR33A8MZF0 331 aa6.02□□□□□ -1.45
CD44-233ENST00000531141 SMAD7O15105 426 aaKnown RBP6.02□□□□□ -1.45
CD44-233ENST00000531141 STK10O94804 968 aaKnown RBP6.02□□□□□ -1.45
CD44-233ENST00000531141 CBX7O95931 251 aa6.02□□□□□ -1.45
CD44-233ENST00000531141 ATP2B1P20020 1258 aa6.02□□□□□ -1.45
CD44-233ENST00000531141 ZYXQ15942 572 aaKnown RBP6.02□□□□□ -1.45
CD44-233ENST00000531141 TMEM192Q8IY95 271 aa6.02□□□□□ -1.45
CD44-233ENST00000531141 STK11IPQ8N1F8 1099 aa6.02□□□□□ -1.45
CD44-233ENST00000531141 DTWD2Q8NBA8 298 aa6.02□□□□□ -1.45
CD44-233ENST00000531141 Q96M66 194 aa6.02□□□□□ -1.45
CD44-233ENST00000531141 KRTAP4-12Q9BQ66 201 aa6.02□□□□□ -1.45
CD44-233ENST00000531141 ACTR10Q9NZ32 417 aa6.02□□□□□ -1.45
CD44-233ENST00000531141 SNX11Q9Y5W9 270 aa6.02□□□□□ -1.45
CD44-233ENST00000531141 CNTNAP4Q9C0A0 1308 aa6.01□□□□□ -1.45
CD44-233ENST00000531141 PRNPP04156 253 aa6.01□□□□□ -1.45
CD44-233ENST00000531141 TNK2Q07912 1038 aa6.01□□□□□ -1.45
CD44-233ENST00000531141 NKPD1Q17RQ9 610 aa6.01□□□□□ -1.45
CD44-233ENST00000531141 NBPF12Q5TAG4 269 aaPredicted RBP6.01□□□□□ -1.45
CD44-233ENST00000531141 THAP5Q7Z6K1 395 aa6.01□□□□□ -1.45
CD44-233ENST00000531141 DTX1Q86Y01 620 aa6.01□□□□□ -1.45
CD44-233ENST00000531141 VWCEQ96DN2 955 aa6.01□□□□□ -1.45
CD44-233ENST00000531141 HRASLS5Q96KN8 279 aa6.01□□□□□ -1.45
CD44-233ENST00000531141 MKRN2Q9H000 416 aaKnown RBP6.01□□□□□ -1.45
CD44-233ENST00000531141 PLAGL2Q9UPG8 496 aa6.01□□□□□ -1.45
CD44-233ENST00000531141 SSTR4P31391 388 aa6□□□□□ -1.45
CD44-233ENST00000531141 ETFBP38117 255 aa6□□□□□ -1.45
CD44-233ENST00000531141 PPP2R5EQ16537 467 aa6□□□□□ -1.45
CD44-233ENST00000531141 TRIT1Q9H3H1 467 aaKnown RBP6□□□□□ -1.45
CD44-233ENST00000531141 PCMTD2Q9NV79 361 aa6□□□□□ -1.45
CD44-233ENST00000531141 ZNF214Q9UL59 606 aaPredicted RBP6□□□□□ -1.45
CD44-233ENST00000531141 PITPNM2Q9BZ72 1349 aa5.99□□□□□ -1.45
CD44-233ENST00000531141 SCO2A0A1W2PP80 73 aa5.99□□□□□ -1.45
CD44-233ENST00000531141 PRKCQQ04759 706 aa5.99□□□□□ -1.45
CD44-233ENST00000531141 NBPF6Q5VWK0 638 aa5.99□□□□□ -1.45
CD44-233ENST00000531141 TDRD10Q5VZ19 366 aaKnown RBP5.99□□□□□ -1.45
CD44-233ENST00000531141 PPFIBP1Q86W92 1011 aa5.99□□□□□ -1.45
CD44-233ENST00000531141 CCDC144CPQ8IYA2 1237 aa5.99□□□□□ -1.45
CD44-233ENST00000531141 CKAP2LQ8IYA6 745 aa5.99□□□□□ -1.45
CD44-233ENST00000531141 ZNF512BQ96KM6 892 aaPredicted RBP5.99□□□□□ -1.45
CD44-233ENST00000531141 NBPF4Q96M43 638 aa5.99□□□□□ -1.45
CD44-233ENST00000531141 HIRIP3Q9BW71 556 aaPredicted RBP5.99□□□□□ -1.45
CD44-233ENST00000531141 GPR62Q9BZJ7 368 aa5.99□□□□□ -1.45
CD44-233ENST00000531141 PRR13Q9NZ81 148 aa5.99□□□□□ -1.45
CD44-233ENST00000531141 ANGEL1Q9UNK9 670 aaKnown RBP5.99□□□□□ -1.45
CD44-233ENST00000531141 R3HCC1Q9Y3T6 440 aaKnown RBP5.99□□□□□ -1.45
CD44-233ENST00000531141 ST14Q9Y5Y6 855 aa5.99□□□□□ -1.45
CD44-233ENST00000531141 LTBP3Q9NS15 1303 aa5.99□□□□□ -1.45
CD44-233ENST00000531141 MED26O95402 600 aa5.98□□□□□ -1.45
CD44-233ENST00000531141 NCAPHQ15003 741 aa5.98□□□□□ -1.45
CD44-233ENST00000531141 NBPF9Q3BBW0 867 aa5.98□□□□□ -1.45
CD44-233ENST00000531141 CDKAL1Q5VV42 579 aa5.98□□□□□ -1.45
CD44-233ENST00000531141 LARP1BQ659C4 914 aaKnown RBP5.98□□□□□ -1.45
CD44-233ENST00000531141 VHLLQ6RSH7 139 aa5.98□□□□□ -1.45
CD44-233ENST00000531141 HNRNPLLQ8WVV9 542 aaKnown RBP5.98□□□□□ -1.45
CD44-233ENST00000531141 ASB11Q8WXH4 323 aa5.98□□□□□ -1.45
CD44-233ENST00000531141 HSPA12BQ96MM6 686 aa5.98□□□□□ -1.45
CD44-233ENST00000531141 ASCC2Q9H1I8 757 aaPredicted RBP5.98□□□□□ -1.45
CD44-233ENST00000531141 GPATCH2Q9NW75 528 aa5.98□□□□□ -1.45
CD44-233ENST00000531141 VAV3Q9UKW4 847 aa5.98□□□□□ -1.45
CD44-233ENST00000531141 PCDHB12Q9Y5F1 795 aa5.98□□□□□ -1.45
CD44-233ENST00000531141 C9IYK1 514 aa5.97□□□□□ -1.45
CD44-233ENST00000531141 H3BS24 57 aa5.97□□□□□ -1.45
CD44-233ENST00000531141 LRRN2O75325 713 aa5.97□□□□□ -1.45
CD44-233ENST00000531141 SRFP11831 508 aa5.97□□□□□ -1.45
CD44-233ENST00000531141 GTF2F1P35269 517 aaKnown RBP eCLIP5.97□□□□□ -1.45
CD44-233ENST00000531141 SLC7A5Q01650 507 aa5.97□□□□□ -1.45
CD44-233ENST00000531141 NMIQ13287 307 aaPredicted RBP5.97□□□□□ -1.45
CD44-233ENST00000531141 FXNQ16595 210 aa5.97□□□□□ -1.45
CD44-233ENST00000531141 GNPTABQ3T906 1256 aa5.97□□□□□ -1.45
CD44-233ENST00000531141 ARTNQ5T4W7 220 aa5.97□□□□□ -1.45
CD44-233ENST00000531141 ANKS3Q6ZW76 656 aa5.97□□□□□ -1.45
CD44-233ENST00000531141 C7orf61Q8IZ16 206 aa5.97□□□□□ -1.45
CD44-233ENST00000531141 BCL7CQ8WUZ0 217 aaPredicted RBP5.97□□□□□ -1.45
CD44-233ENST00000531141 KLHL6Q8WZ60 621 aa5.97□□□□□ -1.45
CD44-233ENST00000531141 SEMA3GQ9NS98 782 aa5.97□□□□□ -1.45
CD44-233ENST00000531141 CCDC39Q9UFE4 941 aa5.97□□□□□ -1.45
CD44-233ENST00000531141 SLC5A6Q9Y289 635 aa5.97□□□□□ -1.45
CD44-233ENST00000531141 SHOXO15266 292 aa5.96□□□□□ -1.46
CD44-233ENST00000531141 KLF4O43474 513 aa5.96□□□□□ -1.46
CD44-233ENST00000531141 NAT2P11245 290 aa5.96□□□□□ -1.46
CD44-233ENST00000531141 AUHQ13825 339 aaKnown RBP5.96□□□□□ -1.46
CD44-233ENST00000531141 AOC3Q16853 763 aa5.96□□□□□ -1.46
CD44-233ENST00000531141 AXDND1Q5T1B0 1012 aaPredicted RBP5.96□□□□□ -1.46
CD44-233ENST00000531141 ANGEL2Q5VTE6 544 aaKnown RBP5.96□□□□□ -1.46
CD44-233ENST00000531141 TMPRSS7Q7RTY8 843 aa5.96□□□□□ -1.46
CD44-233ENST00000531141 FLCNQ8NFG4 579 aa5.96□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms