RNA–Protein interactions for RNA: ENST00000530784.1

CSDE1-213, Transcript of cold shock domain containing E1, humanhuman

TSL 2

Gene CSDE1, Length 545 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-213ENST00000530784 ADGRE2Q9UHX3 823 aa11.36□□□□□ -0.59
CSDE1-213ENST00000530784 HDLBPQ00341 1268 aaKnown RBP11.35□□□□□ -0.59
CSDE1-213ENST00000530784 REXO1Q8N1G1 1221 aaKnown RBP11.35□□□□□ -0.59
CSDE1-213ENST00000530784 KIF2CQ99661 725 aa11.35□□□□□ -0.59
CSDE1-213ENST00000530784 PITPNM2Q9BZ72 1349 aa11.35□□□□□ -0.59
CSDE1-213ENST00000530784 KIR3DL1P43629 444 aa11.34□□□□□ -0.59
CSDE1-213ENST00000530784 ZNF165P49910 485 aa11.34□□□□□ -0.59
CSDE1-213ENST00000530784 TNK2Q07912 1038 aa11.34□□□□□ -0.59
CSDE1-213ENST00000530784 PLCL1Q15111 1095 aa11.34□□□□□ -0.59
CSDE1-213ENST00000530784 ARSHQ5FYA8 562 aa11.34□□□□□ -0.59
CSDE1-213ENST00000530784 PHACTR4Q8IZ21 702 aa11.34□□□□□ -0.59
CSDE1-213ENST00000530784 ASB11Q8WXH4 323 aa11.34□□□□□ -0.59
CSDE1-213ENST00000530784 CCDC74BQ96LY2 380 aa11.34□□□□□ -0.59
CSDE1-213ENST00000530784 ST14Q9Y5Y6 855 aa11.34□□□□□ -0.59
CSDE1-213ENST00000530784 WRNQ14191 1432 aaPredicted RBP eCLIP11.34□□□□□ -0.592e-7■□□□□ 9.9
CSDE1-213ENST00000530784 TNNI2P48788 182 aa11.33□□□□□ -0.6
CSDE1-213ENST00000530784 ZNF428Q96B54 188 aa11.33□□□□□ -0.6
CSDE1-213ENST00000530784 Q96M66 194 aa11.33□□□□□ -0.6
CSDE1-213ENST00000530784 SEMA3GQ9NS98 782 aa11.33□□□□□ -0.6
CSDE1-213ENST00000530784 GMIPQ9P107 970 aa11.33□□□□□ -0.6
CSDE1-213ENST00000530784 H3BS24 57 aa11.32□□□□□ -0.6
CSDE1-213ENST00000530784 FUT4P22083 530 aa11.32□□□□□ -0.6
CSDE1-213ENST00000530784 OVOS1Q6IE37 1185 aa11.32□□□□□ -0.6
CSDE1-213ENST00000530784 NT5DC4Q86YG4 428 aa11.32□□□□□ -0.6
CSDE1-213ENST00000530784 ZNF654Q8IZM8 581 aa11.32□□□□□ -0.6
CSDE1-213ENST00000530784 GRIN2AQ12879 1464 aa11.32□□□□□ -0.6
CSDE1-213ENST00000530784 COL17A1Q9UMD9 1497 aaPredicted RBP11.32□□□□□ -0.6
CSDE1-213ENST00000530784 IKZF1Q13422 519 aa11.31□□□□□ -0.6
CSDE1-213ENST00000530784 ANGEL2Q5VTE6 544 aaKnown RBP11.31□□□□□ -0.6
CSDE1-213ENST00000530784 ANTXR1Q9H6X2 564 aa11.31□□□□□ -0.6
CSDE1-213ENST00000530784 ATP13A1Q9HD20 1204 aa11.31□□□□□ -0.6
CSDE1-213ENST00000530784 ADAMTS12P58397 1594 aa11.31□□□□□ -0.6
CSDE1-213ENST00000530784 TOP2BQ02880 1626 aa11.31□□□□□ -0.6
CSDE1-213ENST00000530784 BIVM-ERCC5R4GMW8 1640 aa11.31□□□□□ -0.6
CSDE1-213ENST00000530784 RAG1P15918 1043 aa11.3□□□□□ -0.6
CSDE1-213ENST00000530784 GBP1P32455 592 aa11.3□□□□□ -0.6
CSDE1-213ENST00000530784 CBLL1Q75N03 491 aa11.3□□□□□ -0.6
CSDE1-213ENST00000530784 PODXL2Q9NZ53 605 aa11.3□□□□□ -0.6
CSDE1-213ENST00000530784 RGS13O14921 159 aa11.29□□□□□ -0.6
CSDE1-213ENST00000530784 LRRN2O75325 713 aa11.29□□□□□ -0.6
CSDE1-213ENST00000530784 ZNF792Q3KQV3 632 aa11.29□□□□□ -0.6
CSDE1-213ENST00000530784 CDCP2Q5VXM1 449 aa11.29□□□□□ -0.6
CSDE1-213ENST00000530784 PIWIL2Q8TC59 973 aaKnown RBP11.29□□□□□ -0.6
CSDE1-213ENST00000530784 RNF141Q8WVD5 230 aa11.29□□□□□ -0.6
CSDE1-213ENST00000530784 ATG4CQ96DT6 458 aa11.29□□□□□ -0.6
CSDE1-213ENST00000530784 KREMEN1Q96MU8 473 aa11.29□□□□□ -0.6
CSDE1-213ENST00000530784 ZSWIM5Q9P217 1185 aa11.29□□□□□ -0.6
CSDE1-213ENST00000530784 ADAMTS6Q9UKP5 1117 aa11.29□□□□□ -0.6
CSDE1-213ENST00000530784 UBOX5O94941 541 aa11.28□□□□□ -0.6
CSDE1-213ENST00000530784 TAL1P17542 331 aaPredicted RBP11.28□□□□□ -0.6
CSDE1-213ENST00000530784 POLR2BP30876 1174 aaKnown RBP11.28□□□□□ -0.6
CSDE1-213ENST00000530784 PAK2Q13177 524 aa11.28□□□□□ -0.6
CSDE1-213ENST00000530784 MCTP1Q6DN14 999 aa11.28□□□□□ -0.6
CSDE1-213ENST00000530784 PI4K2BQ8TCG2 481 aa11.28□□□□□ -0.6
CSDE1-213ENST00000530784 UBE2FQ969M7 185 aa11.28□□□□□ -0.6
CSDE1-213ENST00000530784 CNNM2Q9H8M5 875 aa11.28□□□□□ -0.6
CSDE1-213ENST00000530784 PRDM7Q9NQW5 492 aa11.28□□□□□ -0.6
CSDE1-213ENST00000530784 MBNL3Q9NUK0 354 aaKnown RBP11.28□□□□□ -0.6
CSDE1-213ENST00000530784 EPB41L3Q9Y2J2 1087 aaPredicted RBP11.28□□□□□ -0.6
CSDE1-213ENST00000530784 ZP2Q05996 745 aa11.27□□□□□ -0.61
CSDE1-213ENST00000530784 DTWD2Q8NBA8 298 aa11.27□□□□□ -0.61
CSDE1-213ENST00000530784 FHAD1B1AJZ9 1412 aa11.26□□□□□ -0.61
CSDE1-213ENST00000530784 NUP160Q12769 1436 aa11.26□□□□□ -0.61
CSDE1-213ENST00000530784 CEP170Q5SW79 1584 aa11.26□□□□□ -0.61
CSDE1-213ENST00000530784 WASH4PA8MWX3 477 aa11.26□□□□□ -0.61
CSDE1-213ENST00000530784 RNASE1P07998 156 aaKnown RBP11.26□□□□□ -0.61
CSDE1-213ENST00000530784 NLRC3Q7RTR2 1065 aa11.26□□□□□ -0.61
CSDE1-213ENST00000530784 THAP5Q7Z6K1 395 aa11.26□□□□□ -0.61
CSDE1-213ENST00000530784 TMEM40Q8WWA1 233 aa11.26□□□□□ -0.61
CSDE1-213ENST00000530784 DUSP15Q9H1R2 295 aaPredicted RBP11.26□□□□□ -0.61
CSDE1-213ENST00000530784 LRRFIP1Q32MZ4 808 aaKnown RBP11.25□□□□□ -0.61
CSDE1-213ENST00000530784 VWCEQ96DN2 955 aa11.25□□□□□ -0.61
CSDE1-213ENST00000530784 KCNH3Q9ULD8 1083 aa11.25□□□□□ -0.61
CSDE1-213ENST00000530784 ZNRF3Q9ULT6 936 aa11.25□□□□□ -0.61
CSDE1-213ENST00000530784 ERICH3Q5RHP9 1530 aa11.25□□□□□ -0.61
CSDE1-213ENST00000530784 ERCC6L2Q5T890 1561 aa11.24□□□□□ -0.61
CSDE1-213ENST00000530784 MEIS3P2A8K0S8 358 aa11.24□□□□□ -0.61
CSDE1-213ENST00000530784 SLC23A3Q6PIS1 610 aa11.24□□□□□ -0.61
CSDE1-213ENST00000530784 ASPNQ9BXN1 380 aa11.24□□□□□ -0.61
CSDE1-213ENST00000530784 CARS2Q9HA77 564 aaKnown RBP11.24□□□□□ -0.61
CSDE1-213ENST00000530784 LMCD1Q9NZU5 365 aa11.24□□□□□ -0.61
CSDE1-213ENST00000530784 PPT2Q9UMR5 302 aa11.24□□□□□ -0.61
CSDE1-213ENST00000530784 NME1P15531 152 aaKnown RBP11.23□□□□□ -0.61
CSDE1-213ENST00000530784 CHMP4BP1P59074 171 aa11.23□□□□□ -0.61
CSDE1-213ENST00000530784 FERD3LQ96RJ6 166 aa11.23□□□□□ -0.61
CSDE1-213ENST00000530784 RC3H2Q9HBD1 1191 aaKnown RBP11.23□□□□□ -0.61
CSDE1-213ENST00000530784 GINM1Q9NU53 330 aa11.23□□□□□ -0.61
CSDE1-213ENST00000530784 SRFP11831 508 aa11.22□□□□□ -0.61
CSDE1-213ENST00000530784 RAD51AP2Q09MP3 1159 aa11.22□□□□□ -0.61
CSDE1-213ENST00000530784 SHROOM2Q13796 1616 aa11.22□□□□□ -0.61
CSDE1-213ENST00000530784 LRRN4CLQ8ND94 238 aa11.22□□□□□ -0.61
CSDE1-213ENST00000530784 GPR62Q9BZJ7 368 aa11.22□□□□□ -0.61
CSDE1-213ENST00000530784 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP11.22□□□□□ -0.61
CSDE1-213ENST00000530784 RBM25P49756 843 aaKnown RBP11.21□□□□□ -0.61
CSDE1-213ENST00000530784 FBXW10Q5XX13 1052 aa11.21□□□□□ -0.61
CSDE1-213ENST00000530784 GPRASP2Q96D09 838 aa11.21□□□□□ -0.61
CSDE1-213ENST00000530784 TNFRSF10CO14798 259 aa11.2□□□□□ -0.62
CSDE1-213ENST00000530784 IMPDH2P12268 514 aa11.2□□□□□ -0.62
CSDE1-213ENST00000530784 TPP2P29144 1249 aaPredicted RBP11.2□□□□□ -0.62
CSDE1-213ENST00000530784 SLC9A7Q96T83 725 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 118.2 ms