RNA–Protein interactions for RNA: ENST00000530304.5

PCF11-203, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 1 (best)

Gene PCF11, Length 2,649 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-203ENST00000530304 CAVIN4Q5BKX8 364 aa22.1■■□□□ 1.13
PCF11-203ENST00000530304 ANKRD18AQ8IVF6 992 aa22.1■■□□□ 1.13
PCF11-203ENST00000530304 STAMQ92783 540 aa22.1■■□□□ 1.13
PCF11-203ENST00000530304 IRX2Q9BZI1 471 aaPredicted RBP22.1■■□□□ 1.13
PCF11-203ENST00000530304 ATP2C1P98194 919 aaPredicted RBP22.1■■□□□ 1.13
PCF11-203ENST00000530304 RAD9BQ6WBX8 426 aa22.1■■□□□ 1.13
PCF11-203ENST00000530304 NAA15Q9BXJ9 866 aaKnown RBP22.1■■□□□ 1.13
PCF11-203ENST00000530304 LAMB2P55268 1798 aa22.1■■□□□ 1.13
PCF11-203ENST00000530304 USP17L12C9JPN9 530 aa22.1■■□□□ 1.13
PCF11-203ENST00000530304 USP17L21D6R901 530 aa22.1■■□□□ 1.13
PCF11-203ENST00000530304 DDAH1O94760 285 aa22.1■■□□□ 1.13
PCF11-203ENST00000530304 SEC31AO94979 1220 aaKnown RBP22.1■■□□□ 1.13
PCF11-203ENST00000530304 PCP11498 1178 aaKnown RBP22.1■■□□□ 1.13
PCF11-203ENST00000530304 RSRC2Q7L4I2 434 aaKnown RBP22.1■■□□□ 1.13
PCF11-203ENST00000530304 SRBD1Q8N5C6 995 aaKnown RBP22.1■■□□□ 1.13
PCF11-203ENST00000530304 GPR161Q8N6U8 529 aaKnown RBP22.1■■□□□ 1.13
PCF11-203ENST00000530304 CCDC12Q8WUD4 166 aaPredicted RBP22.1■■□□□ 1.13
PCF11-203ENST00000530304 FILIP1LQ4L180 1135 aa22.09■■□□□ 1.13
PCF11-203ENST00000530304 LZTFL1Q9NQ48 299 aa22.09■■□□□ 1.13
PCF11-203ENST00000530304 ADGRG1Q9Y653 693 aa22.09■■□□□ 1.13
PCF11-203ENST00000530304 CNTNAP5Q8WYK1 1306 aa22.09■■□□□ 1.13
PCF11-203ENST00000530304 MYH14Q7Z406 1995 aaKnown RBP22.09■■□□□ 1.13
PCF11-203ENST00000530304 SEMA3EO15041 775 aa22.09■■□□□ 1.13
PCF11-203ENST00000530304 EVX2Q03828 476 aa22.09■■□□□ 1.13
PCF11-203ENST00000530304 C3orf67Q6ZVT6 689 aa22.09■■□□□ 1.13
PCF11-203ENST00000530304 FAM84BQ96KN1 310 aaPredicted RBP22.09■■□□□ 1.13
PCF11-203ENST00000530304 NMT2O60551 498 aa22.08■■□□□ 1.13
PCF11-203ENST00000530304 TEX35Q5T0J7 233 aa22.08■■□□□ 1.13
PCF11-203ENST00000530304 BSDC1Q9NW68 430 aaPredicted RBP22.08■■□□□ 1.13
PCF11-203ENST00000530304 XDHP47989 1333 aa22.08■■□□□ 1.13
PCF11-203ENST00000530304 E2F4Q16254 413 aa22.08■■□□□ 1.12
PCF11-203ENST00000530304 ERFEQ4G0M1 354 aa22.08■■□□□ 1.12
PCF11-203ENST00000530304 BLZF1Q9H2G9 400 aa22.08■■□□□ 1.12
PCF11-203ENST00000530304 MINPP1Q9UNW1 487 aa22.08■■□□□ 1.12
PCF11-203ENST00000530304 CTNND2Q9UQB3 1225 aa22.08■■□□□ 1.12
PCF11-203ENST00000530304 MFAP3LO75121 409 aa22.07■■□□□ 1.12
PCF11-203ENST00000530304 COBLO75128 1261 aa22.07■■□□□ 1.12
PCF11-203ENST00000530304 CASP14P31944 242 aa22.07■■□□□ 1.12
PCF11-203ENST00000530304 IQUBQ8NA54 791 aa22.07■■□□□ 1.12
PCF11-203ENST00000530304 CTCFLQ8NI51 663 aaPredicted RBP22.07■■□□□ 1.12
PCF11-203ENST00000530304 A0A0U1RQJ8 604 aa22.07■■□□□ 1.12
PCF11-203ENST00000530304 PIK3AP1Q6ZUJ8 805 aa22.07■■□□□ 1.12
PCF11-203ENST00000530304 ATRIPQ8WXE1 791 aa22.07■■□□□ 1.12
PCF11-203ENST00000530304 DLEC1Q9Y238 1755 aa22.06■■□□□ 1.12
PCF11-203ENST00000530304 ZNF652Q9Y2D9 606 aa22.06■■□□□ 1.12
PCF11-203ENST00000530304 DDX52Q9Y2R4 599 aaKnown RBP eCLIP22.06■■□□□ 1.12
PCF11-203ENST00000530304 TAF1P21675 1872 aa22.06■■□□□ 1.12
PCF11-203ENST00000530304 ATP8B1O43520 1251 aa22.06■■□□□ 1.12
PCF11-203ENST00000530304 GYPCP04921 128 aa22.06■■□□□ 1.12
PCF11-203ENST00000530304 NLRP5P59047 1200 aa22.06■■□□□ 1.12
PCF11-203ENST00000530304 DDB1Q16531 1140 aa22.06■■□□□ 1.12
PCF11-203ENST00000530304 IL17AQ16552 155 aa22.06■■□□□ 1.12
PCF11-203ENST00000530304 CC2D1AQ6P1N0 951 aaPredicted RBP22.06■■□□□ 1.12
PCF11-203ENST00000530304 RABGGTAQ92696 567 aa22.06■■□□□ 1.12
PCF11-203ENST00000530304 SCG2P13521 617 aa22.05■■□□□ 1.12
PCF11-203ENST00000530304 CCT6AP40227 531 aaKnown RBP22.05■■□□□ 1.12
PCF11-203ENST00000530304 FAM193AP78312 1265 aa22.05■■□□□ 1.12
PCF11-203ENST00000530304 FAM47AQ5JRC9 791 aa22.05■■□□□ 1.12
PCF11-203ENST00000530304 NSUN4Q96CB9 384 aaKnown RBP22.05■■□□□ 1.12
PCF11-203ENST00000530304 MTRQ99707 1265 aa22.05■■□□□ 1.12
PCF11-203ENST00000530304 PARD6BQ9BYG5 372 aa22.05■■□□□ 1.12
PCF11-203ENST00000530304 VEGFAP15692 232 aaPredicted RBP22.05■■□□□ 1.12
PCF11-203ENST00000530304 MCM7P33993 719 aa22.05■■□□□ 1.12
PCF11-203ENST00000530304 FXR1P51114 621 aaKnown RBP eCLIP22.05■■□□□ 1.12
PCF11-203ENST00000530304 SF3B3Q15393 1217 aaKnown RBP22.05■■□□□ 1.12
PCF11-203ENST00000530304 RRAGBQ5VZM2 374 aa22.05■■□□□ 1.12
PCF11-203ENST00000530304 PDXDC2PQ6P474 469 aa22.05■■□□□ 1.12
PCF11-203ENST00000530304 RASGRP2Q7LDG7 609 aa22.05■■□□□ 1.12
PCF11-203ENST00000530304 CNGA4Q8IV77 575 aa22.05■■□□□ 1.12
PCF11-203ENST00000530304 GOLGA1Q92805 767 aa22.05■■□□□ 1.12
PCF11-203ENST00000530304 BAZ2BQ9UIF8 2168 aaKnown RBP22.04■■□□□ 1.12
PCF11-203ENST00000530304 RREB1Q92766 1687 aa22.04■■□□□ 1.12
PCF11-203ENST00000530304 ADAMTS3O15072 1205 aa22.04■■□□□ 1.12
PCF11-203ENST00000530304 WNK3Q9BYP7 1800 aa22.04■■□□□ 1.12
PCF11-203ENST00000530304 ITIH6Q6UXX5 1313 aa22.04■■□□□ 1.12
PCF11-203ENST00000530304 ORC4O43929 436 aa22.04■■□□□ 1.12
PCF11-203ENST00000530304 SASH3O75995 380 aa22.04■■□□□ 1.12
PCF11-203ENST00000530304 TBC1D8O95759 1140 aa22.04■■□□□ 1.12
PCF11-203ENST00000530304 TRAPPC10P48553 1259 aa22.04■■□□□ 1.12
PCF11-203ENST00000530304 MECOMQ03112 1051 aa22.04■■□□□ 1.12
PCF11-203ENST00000530304 KRT31Q15323 416 aa22.04■■□□□ 1.12
PCF11-203ENST00000530304 DCP1AQ9NPI6 582 aaPredicted RBP22.04■■□□□ 1.12
PCF11-203ENST00000530304 A0A1B0GUL6 1792 aa22.04■■□□□ 1.12
PCF11-203ENST00000530304 KIF5CO60282 957 aa22.03■■□□□ 1.12
PCF11-203ENST00000530304 PFKFB3Q16875 520 aaPredicted RBP22.03■■□□□ 1.12
PCF11-203ENST00000530304 LIMA1Q9UHB6 759 aaKnown RBP22.03■■□□□ 1.12
PCF11-203ENST00000530304 LRRC10BA6NIK2 292 aa22.03■■□□□ 1.12
PCF11-203ENST00000530304 CELF1Q92879 486 aaKnown RBP22.03■■□□□ 1.12
PCF11-203ENST00000530304 CCDC51Q96ER9 411 aa22.03■■□□□ 1.12
PCF11-203ENST00000530304 RWDD2AQ9UIY3 292 aa22.03■■□□□ 1.12
PCF11-203ENST00000530304 N4BP3O15049 544 aa22.02■■□□□ 1.12
PCF11-203ENST00000530304 KLRK1P26718 216 aa22.02■■□□□ 1.12
PCF11-203ENST00000530304 FBXO33Q7Z6M2 555 aa22.02■■□□□ 1.12
PCF11-203ENST00000530304 PYM1Q9BRP8 204 aaKnown RBP22.02■■□□□ 1.12
PCF11-203ENST00000530304 GTPBP6O43824 516 aaPredicted RBP22.02■■□□□ 1.12
PCF11-203ENST00000530304 CLEC4GQ6UXB4 293 aa22.02■■□□□ 1.12
PCF11-203ENST00000530304 CREBRFQ8IUR6 639 aa22.02■■□□□ 1.12
PCF11-203ENST00000530304 MARCH10Q8NA82 808 aaPredicted RBP22.02■■□□□ 1.12
PCF11-203ENST00000530304 CDCA7Q9BWT1 371 aaPredicted RBP22.02■■□□□ 1.12
PCF11-203ENST00000530304 FECHP22830 423 aa22.01■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms