RNA–Protein interactions for RNA: ENST00000529637.5

USP48-213, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 3,228 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-213ENST00000529637 MYO5AQ9Y4I1 1855 aaKnown RBP16.05■□□□□ 0.16
USP48-213ENST00000529637 IFNAR1P17181 557 aa16.05■□□□□ 0.16
USP48-213ENST00000529637 CHRNDQ07001 517 aa16.05■□□□□ 0.16
USP48-213ENST00000529637 POSTNQ15063 836 aa16.05■□□□□ 0.16
USP48-213ENST00000529637 ALX1Q15699 326 aa16.05■□□□□ 0.16
USP48-213ENST00000529637 CTAGE15A4D2H0 777 aa16.05■□□□□ 0.16
USP48-213ENST00000529637 CTAGE8P0CG41 777 aa16.05■□□□□ 0.16
USP48-213ENST00000529637 CASP1P29466 404 aa16.05■□□□□ 0.16
USP48-213ENST00000529637 CASP14P31944 242 aa16.05■□□□□ 0.16
USP48-213ENST00000529637 KLHL10Q6JEL2 608 aa16.05■□□□□ 0.16
USP48-213ENST00000529637 USP49Q70CQ1 688 aa16.05■□□□□ 0.16
USP48-213ENST00000529637 CTAGE6Q86UF2 777 aa16.05■□□□□ 0.16
USP48-213ENST00000529637 CTAGE4Q8IX94 777 aa16.05■□□□□ 0.16
USP48-213ENST00000529637 ENOX1Q8TC92 643 aaKnown RBP16.05■□□□□ 0.16
USP48-213ENST00000529637 HINFPQ9BQA5 517 aa16.05■□□□□ 0.16
USP48-213ENST00000529637 A0A1B0GTH6 734 aa16.04■□□□□ 0.16
USP48-213ENST00000529637 CCDC196A0A1B0GTZ2 297 aa16.04■□□□□ 0.16
USP48-213ENST00000529637 SMIM22K7EJ46 135 aa16.04■□□□□ 0.16
USP48-213ENST00000529637 ZMYND10O75800 440 aa16.04■□□□□ 0.16
USP48-213ENST00000529637 ZNF654Q8IZM8 581 aa16.04■□□□□ 0.16
USP48-213ENST00000529637 MICALL1Q8N3F8 863 aa16.04■□□□□ 0.16
USP48-213ENST00000529637 PANX2Q96RD6 677 aa16.04■□□□□ 0.16
USP48-213ENST00000529637 RNF41Q9H4P4 317 aaPredicted RBP16.04■□□□□ 0.16
USP48-213ENST00000529637 AKAP11Q9UKA4 1901 aa16.04■□□□□ 0.16
USP48-213ENST00000529637 POTEB2H3BUK9 544 aa16.04■□□□□ 0.16
USP48-213ENST00000529637 RNF225M0QZC1 329 aaPredicted RBP16.04■□□□□ 0.16
USP48-213ENST00000529637 MYO1BO43795 1136 aa16.04■□□□□ 0.16
USP48-213ENST00000529637 MMP1P03956 469 aa16.04■□□□□ 0.16
USP48-213ENST00000529637 CDC25AP30304 524 aa16.04■□□□□ 0.16
USP48-213ENST00000529637 FXR1P51114 621 aaKnown RBP eCLIP16.04■□□□□ 0.165e-7■■■■□ 25.7
USP48-213ENST00000529637 KAT2BQ92831 832 aa16.04■□□□□ 0.16
USP48-213ENST00000529637 EHD4Q9H223 541 aa16.04■□□□□ 0.16
USP48-213ENST00000529637 PCDHB6Q9Y5E3 794 aa16.04■□□□□ 0.16
USP48-213ENST00000529637 MYH7P12883 1935 aa16.04■□□□□ 0.16
USP48-213ENST00000529637 CYP2D7A0A087X1C5 515 aa16.04■□□□□ 0.16
USP48-213ENST00000529637 PPFIA4O75335 1185 aa16.04■□□□□ 0.16
USP48-213ENST00000529637 PRPF6O94906 941 aaKnown RBP16.04■□□□□ 0.16
USP48-213ENST00000529637 GNAT2P19087 354 aa16.04■□□□□ 0.16
USP48-213ENST00000529637 PPARAQ07869 468 aa16.04■□□□□ 0.16
USP48-213ENST00000529637 RASGRP2Q7LDG7 609 aa16.04■□□□□ 0.16
USP48-213ENST00000529637 NUTM2AQ8IVF1 878 aaPredicted RBP16.04■□□□□ 0.16
USP48-213ENST00000529637 OXER1Q8TDS5 423 aa16.04■□□□□ 0.16
USP48-213ENST00000529637 NCAPGQ9BPX3 1015 aa16.04■□□□□ 0.16
USP48-213ENST00000529637 BRMS1Q9HCU9 246 aa16.04■□□□□ 0.16
USP48-213ENST00000529637 TOGARAM1Q9Y4F4 1720 aa16.03■□□□□ 0.16
USP48-213ENST00000529637 WTIPA6NIX2 430 aaPredicted RBP16.03■□□□□ 0.16
USP48-213ENST00000529637 EIF5P55010 431 aaKnown RBP16.03■□□□□ 0.16
USP48-213ENST00000529637 MORC3Q14149 939 aa16.03■□□□□ 0.16
USP48-213ENST00000529637 MSL3Q8N5Y2 521 aaKnown RBP16.03■□□□□ 0.16
USP48-213ENST00000529637 FANCBQ8NB91 859 aa16.03■□□□□ 0.16
USP48-213ENST00000529637 VPS54Q9P1Q0 977 aa16.03■□□□□ 0.16
USP48-213ENST00000529637 TRIM10Q9UDY6 481 aa16.03■□□□□ 0.16
USP48-213ENST00000529637 MAGEB6P1A0A0J9YX57 407 aa16.03■□□□□ 0.16
USP48-213ENST00000529637 DEXIO95424 95 aa16.03■□□□□ 0.16
USP48-213ENST00000529637 DDB1Q16531 1140 aa16.03■□□□□ 0.16
USP48-213ENST00000529637 SLC4A8Q2Y0W8 1093 aa16.03■□□□□ 0.16
USP48-213ENST00000529637 GSPT2Q8IYD1 628 aaKnown RBP16.03■□□□□ 0.16
USP48-213ENST00000529637 SMYD4Q8IYR2 804 aaPredicted RBP16.03■□□□□ 0.16
USP48-213ENST00000529637 HDAC6Q9UBN7 1215 aa16.03■□□□□ 0.16
USP48-213ENST00000529637 ATRNO75882 1429 aa16.02■□□□□ 0.16
USP48-213ENST00000529637 ENC1O14682 589 aa16.02■□□□□ 0.16
USP48-213ENST00000529637 SARSP49591 514 aaKnown RBP16.02■□□□□ 0.16
USP48-213ENST00000529637 TADA2BQ86TJ2 420 aa16.02■□□□□ 0.16
USP48-213ENST00000529637 PPFIBP1Q86W92 1011 aa16.02■□□□□ 0.16
USP48-213ENST00000529637 TFR2Q9UP52 801 aa16.02■□□□□ 0.16
USP48-213ENST00000529637 TNKSO95271 1327 aa16.02■□□□□ 0.16
USP48-213ENST00000529637 CD44P16070 742 aaKnown RBP16.02■□□□□ 0.16
USP48-213ENST00000529637 LIG3P49916 1009 aa16.02■□□□□ 0.16
USP48-213ENST00000529637 ERVK-24P63145 666 aa16.02■□□□□ 0.16
USP48-213ENST00000529637 RILPL1Q5EBL4 403 aa16.02■□□□□ 0.16
USP48-213ENST00000529637 CRACR2BQ8N4Y2 399 aaPredicted RBP16.02■□□□□ 0.16
USP48-213ENST00000529637 AFAP1L1Q8TED9 768 aa16.02■□□□□ 0.16
USP48-213ENST00000529637 ESR2Q92731 530 aa16.02■□□□□ 0.16
USP48-213ENST00000529637 EIF4ENIF1Q9NRA8 985 aaKnown RBP16.02■□□□□ 0.16
USP48-213ENST00000529637 GNL3LQ9NVN8 582 aaKnown RBP16.02■□□□□ 0.16
USP48-213ENST00000529637 LOC102724428A0A0B4J2F2 783 aa16.02■□□□□ 0.15
USP48-213ENST00000529637 ARHGAP25P42331 645 aa16.02■□□□□ 0.15
USP48-213ENST00000529637 AFMP43652 599 aa16.02■□□□□ 0.15
USP48-213ENST00000529637 KCNQ4P56696 695 aa16.02■□□□□ 0.15
USP48-213ENST00000529637 SIK1P57059 783 aa16.02■□□□□ 0.15
USP48-213ENST00000529637 MLKLQ8NB16 471 aa16.02■□□□□ 0.15
USP48-213ENST00000529637 STAG1Q8WVM7 1258 aa16.02■□□□□ 0.15
USP48-213ENST00000529637 NAPGQ99747 312 aaPredicted RBP16.02■□□□□ 0.15
USP48-213ENST00000529637 DEF6Q9H4E7 631 aa16.02■□□□□ 0.15
USP48-213ENST00000529637 BAZ2BQ9UIF8 2168 aaKnown RBP16.01■□□□□ 0.15
USP48-213ENST00000529637 ZC3H4Q9UPT8 1303 aaKnown RBP16.01■□□□□ 0.15
USP48-213ENST00000529637 MFAP3LO75121 409 aa16.01■□□□□ 0.15
USP48-213ENST00000529637 GYPCP04921 128 aa16.01■□□□□ 0.15
USP48-213ENST00000529637 TOB1P50616 345 aaPredicted RBP16.01■□□□□ 0.15
USP48-213ENST00000529637 DNAJC21Q5F1R6 531 aaKnown RBP16.01■□□□□ 0.15
USP48-213ENST00000529637 TMTC2Q8N394 836 aa16.01■□□□□ 0.15
USP48-213ENST00000529637 MYCBPQ99417 103 aaPredicted RBP16.01■□□□□ 0.15
USP48-213ENST00000529637 MED4Q9NPJ6 270 aa16.01■□□□□ 0.15
USP48-213ENST00000529637 PAPPAQ13219 1627 aa16.01■□□□□ 0.15
USP48-213ENST00000529637 SRGAP2O75044 1071 aa16.01■□□□□ 0.15
USP48-213ENST00000529637 XBP1P17861 261 aa16.01■□□□□ 0.15
USP48-213ENST00000529637 DYNLL1P63167 89 aaKnown RBP16.01■□□□□ 0.15
USP48-213ENST00000529637 INTS5Q6P9B9 1019 aaKnown RBP16.01■□□□□ 0.15
USP48-213ENST00000529637 ADGRA1Q86SQ6 560 aa16.01■□□□□ 0.15
USP48-213ENST00000529637 FAM205CA6NFA0 338 aa16■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms