RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-223ENST00000526553 POLR2BP30876 1174 aaKnown RBP7.73□□□□□ -1.17
CD44-223ENST00000526553 CD96P40200 585 aa7.73□□□□□ -1.17
CD44-223ENST00000526553 SEC16BQ96JE7 1060 aa7.73□□□□□ -1.17
CD44-223ENST00000526553 TM9SF2Q99805 663 aa7.73□□□□□ -1.17
CD44-223ENST00000526553 IKZF1Q13422 519 aa7.72□□□□□ -1.17
CD44-223ENST00000526553 GPR62Q9BZJ7 368 aa7.72□□□□□ -1.17
CD44-223ENST00000526553 TRIT1Q9H3H1 467 aaKnown RBP7.72□□□□□ -1.17
CD44-223ENST00000526553 CLEC3AO75596 197 aa7.71□□□□□ -1.18
CD44-223ENST00000526553 SRFP11831 508 aa7.71□□□□□ -1.18
CD44-223ENST00000526553 NASPP49321 788 aaPredicted RBP7.71□□□□□ -1.18
CD44-223ENST00000526553 PLCL1Q15111 1095 aa7.71□□□□□ -1.18
CD44-223ENST00000526553 FBXW10Q5XX13 1052 aa7.71□□□□□ -1.18
CD44-223ENST00000526553 LSRQ86X29 649 aaPredicted RBP7.71□□□□□ -1.18
CD44-223ENST00000526553 OR6P1Q8NGX9 317 aa7.71□□□□□ -1.18
CD44-223ENST00000526553 SLC9A7Q96T83 725 aa7.71□□□□□ -1.18
CD44-223ENST00000526553 SRRTQ9BXP5 876 aaKnown RBP7.71□□□□□ -1.18
CD44-223ENST00000526553 DUSP15Q9H1R2 295 aaPredicted RBP7.71□□□□□ -1.18
CD44-223ENST00000526553 ATP13A1Q9HD20 1204 aa7.71□□□□□ -1.18
CD44-223ENST00000526553 LMCD1Q9NZU5 365 aa7.71□□□□□ -1.18
CD44-223ENST00000526553 ADGRE2Q9UHX3 823 aa7.71□□□□□ -1.18
CD44-223ENST00000526553 STRIP2Q9ULQ0 834 aa7.71□□□□□ -1.18
CD44-223ENST00000526553 RBAK-RBAKDNI3L0D1 243 aa7.7□□□□□ -1.18
CD44-223ENST00000526553 LRRN2O75325 713 aa7.7□□□□□ -1.18
CD44-223ENST00000526553 ACRP10323 421 aa7.7□□□□□ -1.18
CD44-223ENST00000526553 NBPF12Q5TAG4 269 aaPredicted RBP7.7□□□□□ -1.18
CD44-223ENST00000526553 CCDC81Q6ZN84 652 aa7.7□□□□□ -1.18
CD44-223ENST00000526553 CBLL1Q75N03 491 aa7.7□□□□□ -1.18
CD44-223ENST00000526553 TMPRSS7Q7RTY8 843 aa7.7□□□□□ -1.18
CD44-223ENST00000526553 CRBNQ96SW2 442 aa7.7□□□□□ -1.18
CD44-223ENST00000526553 GPATCH2Q9NW75 528 aa7.7□□□□□ -1.18
CD44-223ENST00000526553 GUCY2CP25092 1073 aa7.69□□□□□ -1.18
CD44-223ENST00000526553 GIPRP48546 466 aa7.69□□□□□ -1.18
CD44-223ENST00000526553 IRAK1P51617 712 aa7.69□□□□□ -1.18
CD44-223ENST00000526553 EIF6P56537 245 aaKnown RBP7.69□□□□□ -1.18
CD44-223ENST00000526553 ZNF792Q3KQV3 632 aa7.69□□□□□ -1.18
CD44-223ENST00000526553 SLC23A3Q6PIS1 610 aa7.69□□□□□ -1.18
CD44-223ENST00000526553 TMEM192Q8IY95 271 aa7.69□□□□□ -1.18
CD44-223ENST00000526553 UBE2FQ969M7 185 aa7.69□□□□□ -1.18
CD44-223ENST00000526553 SLC6A18Q96N87 628 aa7.69□□□□□ -1.18
CD44-223ENST00000526553 CAPN10Q9HC96 672 aa7.69□□□□□ -1.18
CD44-223ENST00000526553 ZSWIM5Q9P217 1185 aa7.69□□□□□ -1.18
CD44-223ENST00000526553 ATF4P18848 351 aaPredicted RBP7.68□□□□□ -1.18
CD44-223ENST00000526553 ZP2Q05996 745 aa7.68□□□□□ -1.18
CD44-223ENST00000526553 GNL2Q13823 731 aaKnown RBP7.68□□□□□ -1.18
CD44-223ENST00000526553 GAB4Q2WGN9 574 aa7.68□□□□□ -1.18
CD44-223ENST00000526553 TSPYL5Q86VY4 417 aaPredicted RBP7.68□□□□□ -1.18
CD44-223ENST00000526553 C19orf47Q8N9M1 422 aaKnown RBP7.68□□□□□ -1.18
CD44-223ENST00000526553 PI4K2BQ8TCG2 481 aa7.68□□□□□ -1.18
CD44-223ENST00000526553 DHRS1Q96LJ7 313 aa7.68□□□□□ -1.18
CD44-223ENST00000526553 TINF2Q9BSI4 451 aa7.68□□□□□ -1.18
CD44-223ENST00000526553 TPP2P29144 1249 aaPredicted RBP7.67□□□□□ -1.18
CD44-223ENST00000526553 NBPF9Q3BBW0 867 aa7.67□□□□□ -1.18
CD44-223ENST00000526553 SHDQ96IW2 340 aa7.67□□□□□ -1.18
CD44-223ENST00000526553 CARS2Q9HA77 564 aaKnown RBP7.67□□□□□ -1.18
CD44-223ENST00000526553 MBNL3Q9NUK0 354 aaKnown RBP7.67□□□□□ -1.18
CD44-223ENST00000526553 SUCOQ9UBS9 1254 aaKnown RBP7.67□□□□□ -1.18
CD44-223ENST00000526553 ADAMTS6Q9UKP5 1117 aa7.67□□□□□ -1.18
CD44-223ENST00000526553 RNASE1P07998 156 aaKnown RBP7.66□□□□□ -1.18
CD44-223ENST00000526553 PMS1P54277 932 aaKnown RBP7.66□□□□□ -1.18
CD44-223ENST00000526553 UNC5AQ6ZN44 842 aa7.66□□□□□ -1.18
CD44-223ENST00000526553 RUFY4Q6ZNE9 571 aa7.66□□□□□ -1.18
CD44-223ENST00000526553 VPS37DQ86XT2 251 aa7.66□□□□□ -1.18
CD44-223ENST00000526553 ENOX1Q8TC92 643 aaKnown RBP7.66□□□□□ -1.18
CD44-223ENST00000526553 CPLX3Q8WVH0 158 aa7.66□□□□□ -1.18
CD44-223ENST00000526553 SMARCC1Q92922 1105 aaPredicted RBP7.66□□□□□ -1.18
CD44-223ENST00000526553 ASCC2Q9H1I8 757 aaPredicted RBP7.66□□□□□ -1.18
CD44-223ENST00000526553 SLC12A7Q9Y666 1083 aa7.66□□□□□ -1.18
CD44-223ENST00000526553 SHISA3A0PJX4 238 aa7.65□□□□□ -1.18
CD44-223ENST00000526553 ESR1P03372 595 aa7.65□□□□□ -1.18
CD44-223ENST00000526553 NMIQ13287 307 aaPredicted RBP7.65□□□□□ -1.18
CD44-223ENST00000526553 ZNF512BQ96KM6 892 aaPredicted RBP7.65□□□□□ -1.18
CD44-223ENST00000526553 MKRN2Q9H000 416 aaKnown RBP7.65□□□□□ -1.18
CD44-223ENST00000526553 DUSP13Q9UII6 198 aa7.65□□□□□ -1.18
CD44-223ENST00000526553 FAM86C2PA6NEL3 165 aa7.64□□□□□ -1.19
CD44-223ENST00000526553 WASH4PA8MWX3 477 aa7.64□□□□□ -1.19
CD44-223ENST00000526553 ZYXQ15942 572 aaKnown RBP7.64□□□□□ -1.19
CD44-223ENST00000526553 CLEC16AQ2KHT3 1053 aa7.64□□□□□ -1.19
CD44-223ENST00000526553 CREG2Q8IUH2 290 aa7.64□□□□□ -1.19
CD44-223ENST00000526553 SLC43A3Q8NBI5 491 aa7.64□□□□□ -1.19
CD44-223ENST00000526553 SYTL5Q8TDW5 730 aaPredicted RBP7.64□□□□□ -1.19
CD44-223ENST00000526553 HDAC8Q9BY41 377 aa7.64□□□□□ -1.19
CD44-223ENST00000526553 RC3H2Q9HBD1 1191 aaKnown RBP7.64□□□□□ -1.19
CD44-223ENST00000526553 PRR13Q9NZ81 148 aa7.64□□□□□ -1.19
CD44-223ENST00000526553 BBS9Q3SYG4 887 aa7.63□□□□□ -1.19
CD44-223ENST00000526553 MCTP1Q6DN14 999 aa7.63□□□□□ -1.19
CD44-223ENST00000526553 TTC6Q86TZ1 520 aa7.63□□□□□ -1.19
CD44-223ENST00000526553 PPFIBP1Q86W92 1011 aa7.63□□□□□ -1.19
CD44-223ENST00000526553 DAGLBQ8NCG7 672 aa7.63□□□□□ -1.19
CD44-223ENST00000526553 LRRN4CLQ8ND94 238 aa7.63□□□□□ -1.19
CD44-223ENST00000526553 PRDM7Q9NQW5 492 aa7.63□□□□□ -1.19
CD44-223ENST00000526553 PCDHB12Q9Y5F1 795 aa7.63□□□□□ -1.19
CD44-223ENST00000526553 A0A1W2PQH9 124 aa7.62□□□□□ -1.19
CD44-223ENST00000526553 C9IYK1 514 aa7.62□□□□□ -1.19
CD44-223ENST00000526553 SIGLEC6O43699 453 aa7.62□□□□□ -1.19
CD44-223ENST00000526553 ITGB5P18084 799 aa7.62□□□□□ -1.19
CD44-223ENST00000526553 CASP7P55210 303 aa7.62□□□□□ -1.19
CD44-223ENST00000526553 SNW1Q13573 536 aaKnown RBP7.62□□□□□ -1.19
CD44-223ENST00000526553 AUHQ13825 339 aaKnown RBP7.62□□□□□ -1.19
CD44-223ENST00000526553 TMC3Q7Z5M5 1100 aa7.62□□□□□ -1.19
CD44-223ENST00000526553 CCDC120Q96HB5 630 aa7.62□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms