RNA–Protein interactions for RNA: ENST00000526044.5

USP48-211, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 549 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-211ENST00000526044 SLC6A19Q695T7 634 aa6.59□□□□□ -1.35
USP48-211ENST00000526044 REC114Q7Z4M0 266 aa6.59□□□□□ -1.35
USP48-211ENST00000526044 FBXO27Q8NI29 283 aa6.59□□□□□ -1.35
USP48-211ENST00000526044 SPON2Q9BUD6 331 aa6.59□□□□□ -1.35
USP48-211ENST00000526044 LRRC3Q9BY71 257 aa6.59□□□□□ -1.35
USP48-211ENST00000526044 LRRC4CQ9HCJ2 640 aa6.59□□□□□ -1.35
USP48-211ENST00000526044 TJP2Q9UDY2 1190 aa6.59□□□□□ -1.35
USP48-211ENST00000526044 CORINQ9Y5Q5 1042 aa6.59□□□□□ -1.35
USP48-211ENST00000526044 ARHGAP5Q13017 1502 aa6.59□□□□□ -1.35
USP48-211ENST00000526044 FGD6Q6ZV73 1430 aa6.59□□□□□ -1.36
USP48-211ENST00000526044 PRR36Q9H6K5 1346 aa6.58□□□□□ -1.36
USP48-211ENST00000526044 TLR3O15455 904 aaKnown RBP6.58□□□□□ -1.36
USP48-211ENST00000526044 CST3P01034 146 aaPredicted RBP6.58□□□□□ -1.36
USP48-211ENST00000526044 TSPY4P0CV99 314 aa6.58□□□□□ -1.36
USP48-211ENST00000526044 TSPY10P0CW01 314 aa6.58□□□□□ -1.36
USP48-211ENST00000526044 ZNF394Q53GI3 561 aa6.58□□□□□ -1.36
USP48-211ENST00000526044 KIAA0825Q8IV33 1275 aa6.58□□□□□ -1.36
USP48-211ENST00000526044 MCATQ8IVS2 390 aaKnown RBP6.58□□□□□ -1.36
USP48-211ENST00000526044 MRPL41Q8IXM3 137 aaKnown RBP6.58□□□□□ -1.36
USP48-211ENST00000526044 TMEM87BQ96K49 555 aa6.58□□□□□ -1.36
USP48-211ENST00000526044 FBXL18Q96ME1 805 aa6.58□□□□□ -1.36
USP48-211ENST00000526044 NT5C1AQ9BXI3 368 aa6.58□□□□□ -1.36
USP48-211ENST00000526044 DDX41Q9UJV9 622 aaKnown RBP6.58□□□□□ -1.36
USP48-211ENST00000526044 FANCAO15360 1455 aa6.58□□□□□ -1.36
USP48-211ENST00000526044 AKNAQ7Z591 1439 aa6.58□□□□□ -1.36
USP48-211ENST00000526044 PREX2Q70Z35 1606 aa6.58□□□□□ -1.36
USP48-211ENST00000526044 PTPN23Q9H3S7 1636 aa6.58□□□□□ -1.36
USP48-211ENST00000526044 ARAP3Q8WWN8 1544 aa6.57□□□□□ -1.36
USP48-211ENST00000526044 C8AP07357 584 aa6.57□□□□□ -1.36
USP48-211ENST00000526044 APOBRQ0VD83 1088 aa6.57□□□□□ -1.36
USP48-211ENST00000526044 TMEM201Q5SNT2 666 aa6.57□□□□□ -1.36
USP48-211ENST00000526044 PRAMEF13Q5VWM6 474 aa6.57□□□□□ -1.36
USP48-211ENST00000526044 METTL16Q86W50 562 aaKnown RBP6.57□□□□□ -1.36
USP48-211ENST00000526044 TP53INP2Q8IXH6 220 aa6.57□□□□□ -1.36
USP48-211ENST00000526044 POU5F2Q8N7G0 328 aa6.57□□□□□ -1.36
USP48-211ENST00000526044 ACSF2Q96CM8 615 aaPredicted RBP6.57□□□□□ -1.36
USP48-211ENST00000526044 UBP1Q9NZI7 540 aa6.57□□□□□ -1.36
USP48-211ENST00000526044 GTF2IRD1Q9UHL9 959 aa6.57□□□□□ -1.36
USP48-211ENST00000526044 POLR3KQ9Y2Y1 108 aaPredicted RBP6.57□□□□□ -1.36
USP48-211ENST00000526044 PCDHGB7Q9Y5F8 929 aa6.57□□□□□ -1.36
USP48-211ENST00000526044 TEX14Q8IWB6 1497 aa6.57□□□□□ -1.36
USP48-211ENST00000526044 RRBP1Q9P2E9 1410 aaKnown RBP6.57□□□□□ -1.36
USP48-211ENST00000526044 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP6.57□□□□□ -1.36
USP48-211ENST00000526044 PLEKHH2Q8IVE3 1493 aa6.56□□□□□ -1.36
USP48-211ENST00000526044 NEO1Q92859 1461 aa6.56□□□□□ -1.36
USP48-211ENST00000526044 GRIN3BO60391 1043 aa6.56□□□□□ -1.36
USP48-211ENST00000526044 SLITRK5O94991 958 aa6.56□□□□□ -1.36
USP48-211ENST00000526044 CRKP46108 304 aa6.56□□□□□ -1.36
USP48-211ENST00000526044 RBM25P49756 843 aaKnown RBP6.56□□□□□ -1.36
USP48-211ENST00000526044 RACK1P63244 317 aaKnown RBP6.56□□□□□ -1.36
USP48-211ENST00000526044 HDLBPQ00341 1268 aaKnown RBP6.56□□□□□ -1.36
USP48-211ENST00000526044 ARHGAP27Q6ZUM4 889 aa6.56□□□□□ -1.36
USP48-211ENST00000526044 FAM214BQ7L5A3 538 aa6.56□□□□□ -1.36
USP48-211ENST00000526044 ZNF654Q8IZM8 581 aa6.56□□□□□ -1.36
USP48-211ENST00000526044 NKD1Q969G9 470 aa6.56□□□□□ -1.36
USP48-211ENST00000526044 ZNF428Q96B54 188 aa6.56□□□□□ -1.36
USP48-211ENST00000526044 MIPEPQ99797 713 aa6.56□□□□□ -1.36
USP48-211ENST00000526044 KRTAP4-9Q9BYQ8 210 aa6.56□□□□□ -1.36
USP48-211ENST00000526044 MKNK2Q9HBH9 465 aa6.56□□□□□ -1.36
USP48-211ENST00000526044 BRMS1Q9HCU9 246 aa6.56□□□□□ -1.36
USP48-211ENST00000526044 REV1Q9UBZ9 1251 aa6.56□□□□□ -1.36
USP48-211ENST00000526044 ZC3H7BQ9UGR2 993 aaKnown RBP6.56□□□□□ -1.36
USP48-211ENST00000526044 SCAPERQ9BY12 1400 aa6.56□□□□□ -1.36
USP48-211ENST00000526044 CFAP74Q9C0B2 1584 aa6.56□□□□□ -1.36
USP48-211ENST00000526044 IGF2BP3O00425 579 aaKnown RBP eCLIP6.55□□□□□ -1.36
USP48-211ENST00000526044 HTR3BO95264 441 aa6.55□□□□□ -1.36
USP48-211ENST00000526044 RAPGEF3O95398 923 aa6.55□□□□□ -1.36
USP48-211ENST00000526044 EOMESO95936 686 aa6.55□□□□□ -1.36
USP48-211ENST00000526044 JUNBP17275 347 aaPredicted RBP6.55□□□□□ -1.36
USP48-211ENST00000526044 YARSP54577 528 aaKnown RBP6.55□□□□□ -1.36
USP48-211ENST00000526044 MLECQ14165 292 aa6.55□□□□□ -1.36
USP48-211ENST00000526044 MSMPQ1L6U9 139 aa6.55□□□□□ -1.36
USP48-211ENST00000526044 SEZ6Q53EL9 994 aa6.55□□□□□ -1.36
USP48-211ENST00000526044 C9orf131Q5VYM1 1079 aa6.55□□□□□ -1.36
USP48-211ENST00000526044 LETMD1Q6P1Q0 360 aa6.55□□□□□ -1.36
USP48-211ENST00000526044 VSIG10LQ86VR7 867 aa6.55□□□□□ -1.36
USP48-211ENST00000526044 NT5DC4Q86YG4 428 aa6.55□□□□□ -1.36
USP48-211ENST00000526044 AFAP1Q8N556 730 aa6.55□□□□□ -1.36
USP48-211ENST00000526044 FAM13CQ8NE31 585 aa6.55□□□□□ -1.36
USP48-211ENST00000526044 XAGE3Q8WTP9 111 aa6.55□□□□□ -1.36
USP48-211ENST00000526044 EAF1Q96JC9 268 aaPredicted RBP6.55□□□□□ -1.36
USP48-211ENST00000526044 HEXIM2Q96MH2 286 aaKnown RBP6.55□□□□□ -1.36
USP48-211ENST00000526044 KIAA1107Q9UPP5 1409 aa6.55□□□□□ -1.36
USP48-211ENST00000526044 SAMD9LQ8IVG5 1584 aa6.55□□□□□ -1.36
USP48-211ENST00000526044 PPRC1Q5VV67 1664 aaKnown RBP6.55□□□□□ -1.36
USP48-211ENST00000526044 ADGRL1O94910 1474 aa6.54□□□□□ -1.36
USP48-211ENST00000526044 CAMSAP2Q08AD1 1489 aa6.54□□□□□ -1.36
USP48-211ENST00000526044 TCOF1Q13428 1488 aaKnown RBP6.54□□□□□ -1.36
USP48-211ENST00000526044 UPK3BL1B0FP48 263 aa6.54□□□□□ -1.36
USP48-211ENST00000526044 UPK3BL2E5RIL1 263 aa6.54□□□□□ -1.36
USP48-211ENST00000526044 ATE1O95260 518 aa6.54□□□□□ -1.36
USP48-211ENST00000526044 ZNF165P49910 485 aa6.54□□□□□ -1.36
USP48-211ENST00000526044 ZNF746Q6NUN9 644 aaPredicted RBP6.54□□□□□ -1.36
USP48-211ENST00000526044 SLITRK4Q8IW52 837 aa6.54□□□□□ -1.36
USP48-211ENST00000526044 REXO1Q8N1G1 1221 aaKnown RBP6.54□□□□□ -1.36
USP48-211ENST00000526044 FAM181AQ8N9Y4 354 aa6.54□□□□□ -1.36
USP48-211ENST00000526044 RIN3Q8TB24 985 aa6.54□□□□□ -1.36
USP48-211ENST00000526044 DPH2Q9BQC3 489 aaPredicted RBP6.54□□□□□ -1.36
USP48-211ENST00000526044 PCGF6Q9BYE7 350 aa6.54□□□□□ -1.36
USP48-211ENST00000526044 PRDM5Q9NQX1 630 aaPredicted RBP6.54□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms