RNA–Protein interactions for RNA: ENST00000524922.1

CD44-212, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 352 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-212	ENST00000524922	CRELD1	Q96HD1	420 aa		3.3	□□□□□ -1.88
CD44-212	ENST00000524922	DIRC2	Q96SL1	478 aa		3.3	□□□□□ -1.88
CD44-212	ENST00000524922	PPP1R16B	Q96T49	567 aa		3.3	□□□□□ -1.88
CD44-212	ENST00000524922	C19orf44	Q9H6X5	657 aa		3.3	□□□□□ -1.88
CD44-212	ENST00000524922	REV1	Q9UBZ9	1251 aa		3.3	□□□□□ -1.88
CD44-212	ENST00000524922	PCDHA11	Q9Y5I1	949 aa		3.3	□□□□□ -1.88
CD44-212	ENST00000524922	ETV2	O00321	342 aa	Predicted RBP	3.29	□□□□□ -1.88
CD44-212	ENST00000524922	UBOX5	O94941	541 aa		3.29	□□□□□ -1.88
CD44-212	ENST00000524922	HTR3B	O95264	441 aa		3.29	□□□□□ -1.88
CD44-212	ENST00000524922	PLCG1	P19174	1290 aa		3.29	□□□□□ -1.88
CD44-212	ENST00000524922	HK2	P52789	917 aa		3.29	□□□□□ -1.88
CD44-212	ENST00000524922	LCE5A	Q5TCM9	118 aa		3.29	□□□□□ -1.88
CD44-212	ENST00000524922	MPZL3	Q6UWV2	235 aa		3.29	□□□□□ -1.88
CD44-212	ENST00000524922	TTLL10	Q6ZVT0	673 aa		3.29	□□□□□ -1.88
CD44-212	ENST00000524922	REC114	Q7Z4M0	266 aa		3.29	□□□□□ -1.88
CD44-212	ENST00000524922	FAM13C	Q8NE31	585 aa		3.29	□□□□□ -1.88
CD44-212	ENST00000524922	PDZD8	Q8NEN9	1154 aa		3.29	□□□□□ -1.88
CD44-212	ENST00000524922	FBXO27	Q8NI29	283 aa		3.29	□□□□□ -1.88
CD44-212	ENST00000524922	BAHD1	Q8TBE0	780 aa	Predicted RBP	3.29	□□□□□ -1.88
CD44-212	ENST00000524922	MYLIP	Q8WY64	445 aa		3.29	□□□□□ -1.88
CD44-212	ENST00000524922	CCDC120	Q96HB5	630 aa		3.29	□□□□□ -1.88
CD44-212	ENST00000524922	KREMEN1	Q96MU8	473 aa		3.29	□□□□□ -1.88
CD44-212	ENST00000524922	TMEM74	Q96NL1	305 aa		3.29	□□□□□ -1.88
CD44-212	ENST00000524922	TOX2	Q96NM4	488 aa		3.29	□□□□□ -1.88
CD44-212	ENST00000524922	RSRP1	Q9BUV0	290 aa		3.29	□□□□□ -1.88
CD44-212	ENST00000524922	GCM1	Q9NP62	436 aa		3.29	□□□□□ -1.88
CD44-212	ENST00000524922	DUSP13	Q9UII6	198 aa		3.29	□□□□□ -1.88
CD44-212	ENST00000524922	GREM1	O60565	184 aa		3.28	□□□□□ -1.88
CD44-212	ENST00000524922	ZSCAN22	P10073	491 aa	Predicted RBP	3.28	□□□□□ -1.88
CD44-212	ENST00000524922	EGR3	Q06889	387 aa		3.28	□□□□□ -1.88
CD44-212	ENST00000524922	PSMD2	Q13200	908 aa		3.28	□□□□□ -1.88
CD44-212	ENST00000524922	KCNA10	Q16322	511 aa		3.28	□□□□□ -1.88
CD44-212	ENST00000524922	ATG14	Q6ZNE5	492 aa		3.28	□□□□□ -1.88
CD44-212	ENST00000524922	LRRC3	Q9BY71	257 aa		3.28	□□□□□ -1.88
CD44-212	ENST00000524922	MCOLN1	Q9GZU1	580 aa		3.28	□□□□□ -1.88
CD44-212	ENST00000524922	EPB41L4B	Q9H329	900 aa		3.28	□□□□□ -1.88
CD44-212	ENST00000524922	TRIT1	Q9H3H1	467 aa	Known RBP	3.28	□□□□□ -1.88
CD44-212	ENST00000524922	DCP1A	Q9NPI6	582 aa	Predicted RBP	3.28	□□□□□ -1.88
CD44-212	ENST00000524922	YBX2	Q9Y2T7	364 aa	Known RBP	3.28	□□□□□ -1.88
CD44-212	ENST00000524922	TMEM82	A0PJX8	343 aa		3.27	□□□□□ -1.89
CD44-212	ENST00000524922	NPIPB6	E9PJ23	425 aa		3.27	□□□□□ -1.89
CD44-212	ENST00000524922	GRIN3B	O60391	1043 aa		3.27	□□□□□ -1.89
CD44-212	ENST00000524922	ATE1	O95260	518 aa		3.27	□□□□□ -1.89
CD44-212	ENST00000524922	RAC2	P15153	192 aa		3.27	□□□□□ -1.89
CD44-212	ENST00000524922	CRK	P46108	304 aa		3.27	□□□□□ -1.89
CD44-212	ENST00000524922	YARS	P54577	528 aa	Known RBP	3.27	□□□□□ -1.89
CD44-212	ENST00000524922	LDLRAD1	Q5T700	205 aa		3.27	□□□□□ -1.89
CD44-212	ENST00000524922	FBXL19	Q6PCT2	694 aa		3.27	□□□□□ -1.89
CD44-212	ENST00000524922	FAM196A	Q6ZSG2	479 aa		3.27	□□□□□ -1.89
CD44-212	ENST00000524922	ANKLE2	Q86XL3	938 aa		3.27	□□□□□ -1.89
CD44-212	ENST00000524922	IRF2BP1	Q8IU81	584 aa		3.27	□□□□□ -1.89
CD44-212	ENST00000524922	USHBP1	Q8N6Y0	703 aa		3.27	□□□□□ -1.89
CD44-212	ENST00000524922	ASPN	Q9BXN1	380 aa		3.27	□□□□□ -1.89
CD44-212	ENST00000524922	HDAC8	Q9BY41	377 aa		3.27	□□□□□ -1.89
CD44-212	ENST00000524922	KRTAP4-5	Q9BYR2	181 aa		3.27	□□□□□ -1.89
CD44-212	ENST00000524922	ZNF552	Q9H707	407 aa	Predicted RBP	3.27	□□□□□ -1.89
CD44-212	ENST00000524922	COPRS	Q9NQ92	184 aa		3.27	□□□□□ -1.89
CD44-212	ENST00000524922	GPATCH2	Q9NW75	528 aa		3.27	□□□□□ -1.89
CD44-212	ENST00000524922	RAPGEFL1	Q9UHV5	662 aa		3.27	□□□□□ -1.89
CD44-212	ENST00000524922	SMG5	Q9UPR3	1016 aa	Known RBP	3.27	□□□□□ -1.89
CD44-212	ENST00000524922	CC2D2A	Q9P2K1	1620 aa		3.26	□□□□□ -1.89
CD44-212	ENST00000524922	EIF4G1	Q04637	1599 aa	Known RBP	3.26	□□□□□ -1.89
CD44-212	ENST00000524922	FITM1	A5D6W6	292 aa		3.26	□□□□□ -1.89
CD44-212	ENST00000524922	SLC22A31	A6NKX4	558 aa		3.26	□□□□□ -1.89
CD44-212	ENST00000524922	PATL2	C9JE40	543 aa	Known RBP	3.26	□□□□□ -1.89
CD44-212	ENST00000524922	RGS13	O14921	159 aa		3.26	□□□□□ -1.89
CD44-212	ENST00000524922	PSPN	O60542	156 aa		3.26	□□□□□ -1.89
CD44-212	ENST00000524922	PEX10	O60683	326 aa		3.26	□□□□□ -1.89
CD44-212	ENST00000524922	LMNB1	P20700	586 aa		3.26	□□□□□ -1.89
CD44-212	ENST00000524922	LINC00310	P59036	64 aa		3.26	□□□□□ -1.89
CD44-212	ENST00000524922	FAM160A1	Q05DH4	1040 aa		3.26	□□□□□ -1.89
CD44-212	ENST00000524922	MPP2	Q14168	576 aa		3.26	□□□□□ -1.89
CD44-212	ENST00000524922	NLRX1	Q86UT6	975 aa		3.26	□□□□□ -1.89
CD44-212	ENST00000524922	LILRA2	Q8N149	483 aa		3.26	□□□□□ -1.89
CD44-212	ENST00000524922	GOLM1	Q8NBJ4	401 aa		3.26	□□□□□ -1.89
CD44-212	ENST00000524922	INTS4	Q96HW7	963 aa	Known RBP	3.26	□□□□□ -1.89
CD44-212	ENST00000524922	C20orf173	Q96LM9	149 aa		3.26	□□□□□ -1.89
CD44-212	ENST00000524922	SLC26A8	Q96RN1	970 aa		3.26	□□□□□ -1.89
CD44-212	ENST00000524922	KIF2C	Q99661	725 aa		3.26	□□□□□ -1.89
CD44-212	ENST00000524922	KBTBD4	Q9NVX7	518 aa		3.26	□□□□□ -1.89
CD44-212	ENST00000524922	NFIB	O00712	420 aa		3.25	□□□□□ -1.89
CD44-212	ENST00000524922	SORBS3	O60504	671 aa		3.25	□□□□□ -1.89
CD44-212	ENST00000524922	GBP2	P32456	591 aa	Predicted RBP	3.25	□□□□□ -1.89
CD44-212	ENST00000524922	GALK1	P51570	392 aa		3.25	□□□□□ -1.89
CD44-212	ENST00000524922	DLG4	P78352	724 aa		3.25	□□□□□ -1.89
CD44-212	ENST00000524922	SNW1	Q13573	536 aa	Known RBP	3.25	□□□□□ -1.89
CD44-212	ENST00000524922	MRPL58	Q14197	206 aa	Known RBP	3.25	□□□□□ -1.89
CD44-212	ENST00000524922	NBPF9	Q3BBW0	867 aa		3.25	□□□□□ -1.89
CD44-212	ENST00000524922	BBS9	Q3SYG4	887 aa		3.25	□□□□□ -1.89
CD44-212	ENST00000524922	NBPF12	Q5TAG4	269 aa	Predicted RBP	3.25	□□□□□ -1.89
CD44-212	ENST00000524922	CDCP2	Q5VXM1	449 aa		3.25	□□□□□ -1.89
CD44-212	ENST00000524922	LILRA6	Q6PI73	481 aa		3.25	□□□□□ -1.89
CD44-212	ENST00000524922	TMC3	Q7Z5M5	1100 aa		3.25	□□□□□ -1.89
CD44-212	ENST00000524922	ZSCAN18	Q8TBC5	510 aa	Predicted RBP	3.25	□□□□□ -1.89
CD44-212	ENST00000524922	SYTL5	Q8TDW5	730 aa	Predicted RBP	3.25	□□□□□ -1.89
CD44-212	ENST00000524922	CCDC74B	Q96LY2	380 aa		3.25	□□□□□ -1.89
CD44-212	ENST00000524922	EHMT1	Q9H9B1	1298 aa		3.25	□□□□□ -1.89
CD44-212	ENST00000524922	CWC22	Q9HCG8	908 aa	Known RBP	3.25	□□□□□ -1.89
CD44-212	ENST00000524922	KLHL3	Q9UH77	587 aa		3.25	□□□□□ -1.89
CD44-212	ENST00000524922	KCNH3	Q9ULD8	1083 aa		3.25	□□□□□ -1.89

Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms