RNA–Protein interactions for RNA: ENST00000520755.5

LSM1-203, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best) BASIC

Gene LSM1, Length 975 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-203ENST00000520755 C19orf81C9J6K1 198 aa18.01■□□□□ 0.47
LSM1-203ENST00000520755 IGF2BP3O00425 579 aaKnown RBP eCLIP18.01■□□□□ 0.47
LSM1-203ENST00000520755 CD2BP2O95400 341 aaKnown RBP18.01■□□□□ 0.47
LSM1-203ENST00000520755 HMGB1P09429 215 aaKnown RBP18.01■□□□□ 0.47
LSM1-203ENST00000520755 NT5C2P49902 561 aa18.01■□□□□ 0.47
LSM1-203ENST00000520755 MAP2K1Q02750 393 aaPredicted RBP18.01■□□□□ 0.47
LSM1-203ENST00000520755 MOGSQ13724 837 aa18.01■□□□□ 0.47
LSM1-203ENST00000520755 SEC23AQ15436 765 aa18.01■□□□□ 0.47
LSM1-203ENST00000520755 RCSD1Q6JBY9 416 aa18.01■□□□□ 0.47
LSM1-203ENST00000520755 USP17L2Q6R6M4 530 aa18.01■□□□□ 0.47
LSM1-203ENST00000520755 IFNL1Q8IU54 200 aa18.01■□□□□ 0.47
LSM1-203ENST00000520755 JMYQ8N9B5 988 aa18.01■□□□□ 0.47
LSM1-203ENST00000520755 PTPN18Q99952 460 aa18.01■□□□□ 0.47
LSM1-203ENST00000520755 SH2D4AQ9H788 454 aa18.01■□□□□ 0.47
LSM1-203ENST00000520755 SENP2Q9HC62 589 aa18.01■□□□□ 0.47
LSM1-203ENST00000520755 MTMR4Q9NYA4 1195 aa18.01■□□□□ 0.47
LSM1-203ENST00000520755 CLIP2Q9UDT6 1046 aa18.01■□□□□ 0.47
LSM1-203ENST00000520755 TNKSO95271 1327 aa18■□□□□ 0.47
LSM1-203ENST00000520755 BTBD19C9JJ37 291 aa18■□□□□ 0.47
LSM1-203ENST00000520755 SH2B2O14492 632 aaPredicted RBP18■□□□□ 0.47
LSM1-203ENST00000520755 RAD21O60216 631 aa18■□□□□ 0.47
LSM1-203ENST00000520755 TTLL1O95922 423 aa18■□□□□ 0.47
LSM1-203ENST00000520755 NOVP48745 357 aa18■□□□□ 0.47
LSM1-203ENST00000520755 USP14P54578 494 aa18■□□□□ 0.47
LSM1-203ENST00000520755 TOB2Q14106 344 aaPredicted RBP18■□□□□ 0.47
LSM1-203ENST00000520755 SH3D19Q5HYK7 790 aa18■□□□□ 0.47
LSM1-203ENST00000520755 FAM43AQ8N2R8 423 aa18■□□□□ 0.47
LSM1-203ENST00000520755 ENAHQ8N8S7 591 aaPredicted RBP18■□□□□ 0.47
LSM1-203ENST00000520755 IGDCC4Q8TDY8 1250 aa18■□□□□ 0.47
LSM1-203ENST00000520755 AGXT2Q9BYV1 514 aa18■□□□□ 0.47
LSM1-203ENST00000520755 KIAA1683Q9H0B3 1180 aa18■□□□□ 0.47
LSM1-203ENST00000520755 TCP11L1Q9NUJ3 509 aa18■□□□□ 0.47
LSM1-203ENST00000520755 NYAP2Q9P242 653 aa18■□□□□ 0.47
LSM1-203ENST00000520755 STX8Q9UNK0 236 aa18■□□□□ 0.47
LSM1-203ENST00000520755 NEK4P51957 841 aa17.99■□□□□ 0.47
LSM1-203ENST00000520755 TREML2Q5T2D2 321 aa17.99■□□□□ 0.47
LSM1-203ENST00000520755 OTUD7BQ6GQQ9 843 aa17.99■□□□□ 0.47
LSM1-203ENST00000520755 GPAT2Q6NUI2 795 aa17.99■□□□□ 0.47
LSM1-203ENST00000520755 IQCA1Q86XH1 822 aa17.99■□□□□ 0.47
LSM1-203ENST00000520755 LRRC47Q8N1G4 583 aaKnown RBP17.99■□□□□ 0.47
LSM1-203ENST00000520755 PROCA1Q8NCQ7 364 aaPredicted RBP17.99■□□□□ 0.47
LSM1-203ENST00000520755 ZSCAN10Q96SZ4 725 aaPredicted RBP17.99■□□□□ 0.47
LSM1-203ENST00000520755 BEGAINQ9BUH8 593 aa17.99■□□□□ 0.47
LSM1-203ENST00000520755 LY9Q9HBG7 655 aa17.99■□□□□ 0.47
LSM1-203ENST00000520755 EMILIN3Q9NT22 766 aa17.99■□□□□ 0.47
LSM1-203ENST00000520755 TMX2Q9Y320 296 aa17.99■□□□□ 0.47
LSM1-203ENST00000520755 MYH6P13533 1939 aa17.99■□□□□ 0.47
LSM1-203ENST00000520755 AK2P54819 239 aa17.98■□□□□ 0.47
LSM1-203ENST00000520755 PPP4R3BQ5MIZ7 849 aa17.98■□□□□ 0.47
LSM1-203ENST00000520755 Q6ZUG5 572 aa17.98■□□□□ 0.47
LSM1-203ENST00000520755 ANKRD23Q86SG2 305 aa17.98■□□□□ 0.47
LSM1-203ENST00000520755 FBXL16Q8N461 479 aa17.98■□□□□ 0.47
LSM1-203ENST00000520755 TMEM87BQ96K49 555 aa17.98■□□□□ 0.47
LSM1-203ENST00000520755 MTA3Q9BTC8 594 aa17.98■□□□□ 0.47
LSM1-203ENST00000520755 PDRG1Q9NUG6 133 aa17.98■□□□□ 0.47
LSM1-203ENST00000520755 PDHXO00330 501 aa17.97■□□□□ 0.47
LSM1-203ENST00000520755 IFIT3O14879 490 aaKnown RBP17.97■□□□□ 0.47
LSM1-203ENST00000520755 TRPA1O75762 1119 aa17.97■□□□□ 0.47
LSM1-203ENST00000520755 TMEM67Q5HYA8 995 aa17.97■□□□□ 0.47
LSM1-203ENST00000520755 KIAA1755Q5JYT7 1200 aa17.97■□□□□ 0.47
LSM1-203ENST00000520755 SPICE1Q8N0Z3 855 aa17.97■□□□□ 0.47
LSM1-203ENST00000520755 C12orf42Q96LP6 360 aa17.97■□□□□ 0.47
LSM1-203ENST00000520755 UBAC1Q9BSL1 405 aa17.97■□□□□ 0.47
LSM1-203ENST00000520755 ALDH8A1Q9H2A2 487 aaPredicted RBP17.97■□□□□ 0.47
LSM1-203ENST00000520755 VCPKMTQ9H867 229 aa17.97■□□□□ 0.47
LSM1-203ENST00000520755 GOPCQ9HD26 462 aa17.97■□□□□ 0.47
LSM1-203ENST00000520755 WBP1LQ9NX94 342 aa17.97■□□□□ 0.47
LSM1-203ENST00000520755 RNF186Q9NXI6 227 aa17.97■□□□□ 0.47
LSM1-203ENST00000520755 AGTPBP1Q9UPW5 1226 aa17.97■□□□□ 0.47
LSM1-203ENST00000520755 RLFQ13129 1914 aa17.96■□□□□ 0.47
LSM1-203ENST00000520755 ALDH1A1P00352 501 aa17.96■□□□□ 0.47
LSM1-203ENST00000520755 VCAM1P19320 739 aa17.96■□□□□ 0.47
LSM1-203ENST00000520755 TAF1CQ15572 869 aaPredicted RBP17.96■□□□□ 0.47
LSM1-203ENST00000520755 ANKS1AQ92625 1134 aa17.96■□□□□ 0.47
LSM1-203ENST00000520755 BRF1Q92994 677 aa17.96■□□□□ 0.47
LSM1-203ENST00000520755 MKL1Q969V6 931 aa17.96■□□□□ 0.47
LSM1-203ENST00000520755 LIFRP42702 1097 aa17.95■□□□□ 0.46
LSM1-203ENST00000520755 PABPC4Q13310 644 aaKnown RBP eCLIP17.95■□□□□ 0.462e-7■□□□□ 10.4
LSM1-203ENST00000520755 WTAPQ15007 396 aa17.95■□□□□ 0.46
LSM1-203ENST00000520755 CCDC178Q5BJE1 867 aa17.95■□□□□ 0.46
LSM1-203ENST00000520755 RASGRP2Q7LDG7 609 aa17.95■□□□□ 0.46
LSM1-203ENST00000520755 SGMS1Q86VZ5 419 aa17.95■□□□□ 0.46
LSM1-203ENST00000520755 LPAR1Q92633 364 aa17.95■□□□□ 0.46
LSM1-203ENST00000520755 CHMP4CQ96CF2 233 aa17.95■□□□□ 0.46
LSM1-203ENST00000520755 TMEM47Q9BQJ4 181 aa17.95■□□□□ 0.46
LSM1-203ENST00000520755 LARP6Q9BRS8 491 aaKnown RBP17.95■□□□□ 0.46
LSM1-203ENST00000520755 TSKSQ9UJT2 592 aa17.95■□□□□ 0.46
LSM1-203ENST00000520755 BRPF3Q9ULD4 1205 aa17.95■□□□□ 0.46
LSM1-203ENST00000520755 MTMR7Q9Y216 660 aa17.95■□□□□ 0.46
LSM1-203ENST00000520755 F5H6K3 240 aa17.94■□□□□ 0.46
LSM1-203ENST00000520755 LARGE1O95461 756 aa17.94■□□□□ 0.46
LSM1-203ENST00000520755 NDUFB10O96000 172 aa17.94■□□□□ 0.46
LSM1-203ENST00000520755 HSPA1AP0DMV8 641 aaKnown RBP17.94■□□□□ 0.46
LSM1-203ENST00000520755 HSPA1BP0DMV9 641 aaKnown RBP17.94■□□□□ 0.46
LSM1-203ENST00000520755 TOP1P11387 765 aaKnown RBP17.94■□□□□ 0.46
LSM1-203ENST00000520755 KLRC3Q07444 240 aa17.94■□□□□ 0.46
LSM1-203ENST00000520755 APOBRQ0VD83 1088 aa17.94■□□□□ 0.46
LSM1-203ENST00000520755 CRHR2Q13324 411 aa17.94■□□□□ 0.46
LSM1-203ENST00000520755 SART3Q15020 963 aaKnown RBP17.94■□□□□ 0.46
LSM1-203ENST00000520755 DGKHQ86XP1 1220 aa17.94■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms