RNA–Protein interactions for RNA: ENST00000520228.1

SDCBP-208, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-208ENST00000520228 MBD5Q9P267 1494 aa10.32□□□□□ -0.76
SDCBP-208ENST00000520228 FGRP09769 529 aa10.32□□□□□ -0.76
SDCBP-208ENST00000520228 TSPY4P0CV99 314 aa10.32□□□□□ -0.76
SDCBP-208ENST00000520228 TSPY10P0CW01 314 aa10.32□□□□□ -0.76
SDCBP-208ENST00000520228 ARID5AQ03989 594 aa10.32□□□□□ -0.76
SDCBP-208ENST00000520228 NFKBIBQ15653 356 aa10.32□□□□□ -0.76
SDCBP-208ENST00000520228 SLC6A19Q695T7 634 aa10.32□□□□□ -0.76
SDCBP-208ENST00000520228 VPS37DQ86XT2 251 aa10.32□□□□□ -0.76
SDCBP-208ENST00000520228 TMEM87BQ96K49 555 aa10.32□□□□□ -0.76
SDCBP-208ENST00000520228 SSU72Q9NP77 194 aaKnown RBP10.32□□□□□ -0.76
SDCBP-208ENST00000520228 PPT2Q9UMR5 302 aa10.32□□□□□ -0.76
SDCBP-208ENST00000520228 C9orf84Q5VXU9 1444 aa10.32□□□□□ -0.76
SDCBP-208ENST00000520228 MIA2Q96PC5 1412 aa10.32□□□□□ -0.76
SDCBP-208ENST00000520228 LGR6Q9HBX8 967 aa10.31□□□□□ -0.76
SDCBP-208ENST00000520228 CAMSAP2Q08AD1 1489 aa10.3□□□□□ -0.76
SDCBP-208ENST00000520228 SLC22A31A6NKX4 558 aa10.3□□□□□ -0.76
SDCBP-208ENST00000520228 MEIS3P2A8K0S8 358 aa10.3□□□□□ -0.76
SDCBP-208ENST00000520228 CST3P01034 146 aaPredicted RBP10.3□□□□□ -0.76
SDCBP-208ENST00000520228 ARMCX6Q7L4S7 300 aa10.3□□□□□ -0.76
SDCBP-208ENST00000520228 SLFN12Q8IYM2 578 aa10.3□□□□□ -0.76
SDCBP-208ENST00000520228 RBBP8NLQ8NC74 664 aaPredicted RBP10.3□□□□□ -0.76
SDCBP-208ENST00000520228 FOXQ1Q9C009 403 aa10.3□□□□□ -0.76
SDCBP-208ENST00000520228 GMIPQ9P107 970 aa10.3□□□□□ -0.76
SDCBP-208ENST00000520228 UPK3BL1B0FP48 263 aa10.29□□□□□ -0.76
SDCBP-208ENST00000520228 CHURC1-FNTBB4DL54 471 aa10.29□□□□□ -0.76
SDCBP-208ENST00000520228 UPK3BL2E5RIL1 263 aa10.29□□□□□ -0.76
SDCBP-208ENST00000520228 DYRK3O43781 588 aa10.29□□□□□ -0.76
SDCBP-208ENST00000520228 LRIG2O94898 1065 aa10.29□□□□□ -0.76
SDCBP-208ENST00000520228 IMPDH2P12268 514 aa10.29□□□□□ -0.76
SDCBP-208ENST00000520228 RNF43Q68DV7 783 aa10.29□□□□□ -0.76
SDCBP-208ENST00000520228 MCF2L2Q86YR7 1114 aa10.29□□□□□ -0.76
SDCBP-208ENST00000520228 STRIP2Q9ULQ0 834 aa10.29□□□□□ -0.76
SDCBP-208ENST00000520228 CCDC141Q6ZP82 1450 aa10.29□□□□□ -0.76
SDCBP-208ENST00000520228 ITSN2Q9NZM3 1697 aa10.28□□□□□ -0.76
SDCBP-208ENST00000520228 HECW2Q9P2P5 1572 aa10.28□□□□□ -0.76
SDCBP-208ENST00000520228 RTEL1-TNFRSF6BF6WH68 1400 aa10.28□□□□□ -0.76
SDCBP-208ENST00000520228 DNAJA1P31689 397 aaKnown RBP10.28□□□□□ -0.76
SDCBP-208ENST00000520228 ADMP35318 185 aa10.28□□□□□ -0.76
SDCBP-208ENST00000520228 PRAMEF13Q5VWM6 474 aa10.28□□□□□ -0.76
SDCBP-208ENST00000520228 SHDQ96IW2 340 aa10.28□□□□□ -0.76
SDCBP-208ENST00000520228 FERD3LQ96RJ6 166 aa10.28□□□□□ -0.76
SDCBP-208ENST00000520228 SRRTQ9BXP5 876 aaKnown RBP10.28□□□□□ -0.76
SDCBP-208ENST00000520228 ANTXR1Q9H6X2 564 aa10.28□□□□□ -0.76
SDCBP-208ENST00000520228 FGD6Q6ZV73 1430 aa10.27□□□□□ -0.77
SDCBP-208ENST00000520228 GIPRP48546 466 aa10.27□□□□□ -0.77
SDCBP-208ENST00000520228 CDK5R2Q13319 367 aa10.27□□□□□ -0.77
SDCBP-208ENST00000520228 LRRFIP1Q32MZ4 808 aaKnown RBP10.27□□□□□ -0.77
SDCBP-208ENST00000520228 CDCP2Q5VXM1 449 aa10.27□□□□□ -0.77
SDCBP-208ENST00000520228 OVOS1Q6IE37 1185 aa10.27□□□□□ -0.77
SDCBP-208ENST00000520228 CCDC81Q6ZN84 652 aa10.27□□□□□ -0.77
SDCBP-208ENST00000520228 ZAR1Q86SH2 424 aa10.27□□□□□ -0.77
SDCBP-208ENST00000520228 SHISA5Q8N114 240 aa10.27□□□□□ -0.77
SDCBP-208ENST00000520228 MFSD2AQ8NA29 543 aa10.27□□□□□ -0.77
SDCBP-208ENST00000520228 FAM13CQ8NE31 585 aa10.27□□□□□ -0.77
SDCBP-208ENST00000520228 TMEM40Q8WWA1 233 aa10.27□□□□□ -0.77
SDCBP-208ENST00000520228 DIP2CQ9Y2E4 1556 aa10.26□□□□□ -0.77
SDCBP-208ENST00000520228 NFIAQ12857 509 aa10.26□□□□□ -0.77
SDCBP-208ENST00000520228 FAM50AQ14320 339 aaKnown RBP10.26□□□□□ -0.77
SDCBP-208ENST00000520228 ATG4CQ96DT6 458 aa10.26□□□□□ -0.77
SDCBP-208ENST00000520228 DPH2Q9BQC3 489 aaPredicted RBP10.26□□□□□ -0.77
SDCBP-208ENST00000520228 BUD13Q9BRD0 619 aaKnown RBP eCLIP10.26□□□□□ -0.77
SDCBP-208ENST00000520228 CNNM2Q9H8M5 875 aa10.26□□□□□ -0.77
SDCBP-208ENST00000520228 ATP7AQ04656 1500 aa10.26□□□□□ -0.77
SDCBP-208ENST00000520228 A2MP01023 1474 aa10.25□□□□□ -0.77
SDCBP-208ENST00000520228 FSTP19883 344 aa10.25□□□□□ -0.77
SDCBP-208ENST00000520228 YARSP54577 528 aaKnown RBP10.25□□□□□ -0.77
SDCBP-208ENST00000520228 DBNDD2Q9BQY9 259 aa10.25□□□□□ -0.77
SDCBP-208ENST00000520228 DUSP23Q9BVJ7 150 aa10.25□□□□□ -0.77
SDCBP-208ENST00000520228 PRDM10Q9NQV6 1147 aa10.25□□□□□ -0.77
SDCBP-208ENST00000520228 KLHL3Q9UH77 587 aa10.25□□□□□ -0.77
SDCBP-208ENST00000520228 DHX29Q7Z478 1369 aaKnown RBP10.25□□□□□ -0.77
SDCBP-208ENST00000520228 PTPRMP28827 1452 aa10.24□□□□□ -0.77
SDCBP-208ENST00000520228 AGLP35573 1532 aa10.24□□□□□ -0.77
SDCBP-208ENST00000520228 SLITRK5O94991 958 aa10.24□□□□□ -0.77
SDCBP-208ENST00000520228 IGLV1-40P01703 118 aa10.24□□□□□ -0.77
SDCBP-208ENST00000520228 GGT6Q6P531 493 aa10.24□□□□□ -0.77
SDCBP-208ENST00000520228 OGFOD3Q6PK18 319 aa10.24□□□□□ -0.77
SDCBP-208ENST00000520228 LSRQ86X29 649 aaPredicted RBP10.24□□□□□ -0.77
SDCBP-208ENST00000520228 MFSD14AQ96MC6 490 aa10.24□□□□□ -0.77
SDCBP-208ENST00000520228 TBC1D32Q96NH3 1257 aa10.24□□□□□ -0.77
SDCBP-208ENST00000520228 ABCA6Q8N139 1617 aa10.24□□□□□ -0.77
SDCBP-208ENST00000520228 REREQ9P2R6 1566 aa10.23□□□□□ -0.77
SDCBP-208ENST00000520228 TNFRSF10CO14798 259 aa10.23□□□□□ -0.77
SDCBP-208ENST00000520228 GSC2O15499 205 aa10.23□□□□□ -0.77
SDCBP-208ENST00000520228 F13BP05160 661 aa10.23□□□□□ -0.77
SDCBP-208ENST00000520228 FURINP09958 794 aa10.23□□□□□ -0.77
SDCBP-208ENST00000520228 NME1P15531 152 aaKnown RBP10.23□□□□□ -0.77
SDCBP-208ENST00000520228 EIF6P56537 245 aaKnown RBP10.23□□□□□ -0.77
SDCBP-208ENST00000520228 ARSHQ5FYA8 562 aa10.23□□□□□ -0.77
SDCBP-208ENST00000520228 FAM214BQ7L5A3 538 aa10.23□□□□□ -0.77
SDCBP-208ENST00000520228 NLRC3Q7RTR2 1065 aa10.23□□□□□ -0.77
SDCBP-208ENST00000520228 SLC51AQ86UW1 340 aa10.23□□□□□ -0.77
SDCBP-208ENST00000520228 TAB3Q8N5C8 712 aaPredicted RBP10.23□□□□□ -0.77
SDCBP-208ENST00000520228 PPP1R13LQ8WUF5 828 aa10.23□□□□□ -0.77
SDCBP-208ENST00000520228 CYB5D2Q8WUJ1 264 aa10.23□□□□□ -0.77
SDCBP-208ENST00000520228 KIDINS220Q9ULH0 1771 aa10.23□□□□□ -0.77
SDCBP-208ENST00000520228 ABCC5O15440 1437 aa10.23□□□□□ -0.77
SDCBP-208ENST00000520228 ARHGEF5Q12774 1597 aa10.22□□□□□ -0.77
SDCBP-208ENST00000520228 ADAMTSL3P82987 1691 aa10.22□□□□□ -0.77
SDCBP-208ENST00000520228 BCORL1Q5H9F3 1711 aa10.22□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms