RNA–Protein interactions for RNA: ENST00000514190.5

LIMCH1-220, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 4

Gene LIMCH1, Length 540 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-220ENST00000514190 ICA1Q05084 483 aa15.19■□□□□ 0.02
LIMCH1-220ENST00000514190 SCRN1Q12765 414 aa15.19■□□□□ 0.02
LIMCH1-220ENST00000514190 RAB3GAP1Q15042 981 aa15.19■□□□□ 0.02
LIMCH1-220ENST00000514190 RAB11FIP4Q86YS3 637 aa15.19■□□□□ 0.02
LIMCH1-220ENST00000514190 CLEC10AQ8IUN9 316 aa15.19■□□□□ 0.02
LIMCH1-220ENST00000514190 CCDC83Q8IWF9 413 aa15.19■□□□□ 0.02
LIMCH1-220ENST00000514190 FANCBQ8NB91 859 aa15.19■□□□□ 0.02
LIMCH1-220ENST00000514190 MAP3K14Q99558 947 aa15.19■□□□□ 0.02
LIMCH1-220ENST00000514190 MYL10Q9BUA6 226 aa15.19■□□□□ 0.02
LIMCH1-220ENST00000514190 GBA2Q9HCG7 927 aaPredicted RBP15.19■□□□□ 0.02
LIMCH1-220ENST00000514190 GOLGA8AA7E2F4 631 aa15.18■□□□□ 0.02
LIMCH1-220ENST00000514190 DHX16O60231 1041 aaKnown RBP15.18■□□□□ 0.02
LIMCH1-220ENST00000514190 HSP90AA1P07900 732 aaKnown RBP15.18■□□□□ 0.02
LIMCH1-220ENST00000514190 RXRAP19793 462 aa15.18■□□□□ 0.02
LIMCH1-220ENST00000514190 HUNKP57058 714 aa15.18■□□□□ 0.02
LIMCH1-220ENST00000514190 MAP3K9P80192 1104 aa15.18■□□□□ 0.02
LIMCH1-220ENST00000514190 GRM1Q13255 1194 aa15.18■□□□□ 0.02
LIMCH1-220ENST00000514190 MICU3Q86XE3 530 aa15.18■□□□□ 0.02
LIMCH1-220ENST00000514190 SCYL3Q8IZE3 742 aa15.18■□□□□ 0.02
LIMCH1-220ENST00000514190 C2orf69Q8N8R5 385 aa15.18■□□□□ 0.02
LIMCH1-220ENST00000514190 DDX55Q8NHQ9 600 aaKnown RBP eCLIP15.18■□□□□ 0.02
LIMCH1-220ENST00000514190 NUP133Q8WUM0 1156 aa15.18■□□□□ 0.02
LIMCH1-220ENST00000514190 WRNIP1Q96S55 665 aa15.18■□□□□ 0.02
LIMCH1-220ENST00000514190 NCOA5Q9HCD5 579 aaKnown RBP15.18■□□□□ 0.02
LIMCH1-220ENST00000514190 FAM217BQ9NTX9 383 aaPredicted RBP15.18■□□□□ 0.02
LIMCH1-220ENST00000514190 SYNPO2Q9UMS6 1093 aa15.18■□□□□ 0.02
LIMCH1-220ENST00000514190 FZD1Q9UP38 647 aa15.18■□□□□ 0.02
LIMCH1-220ENST00000514190 NID2Q14112 1375 aa15.17■□□□□ 0.02
LIMCH1-220ENST00000514190 CCDC196A0A1B0GTZ2 297 aa15.17■□□□□ 0.02
LIMCH1-220ENST00000514190 ADD1P35611 737 aaKnown RBP15.17■□□□□ 0.02
LIMCH1-220ENST00000514190 ATP2B2Q01814 1243 aa15.17■□□□□ 0.02
LIMCH1-220ENST00000514190 PRKG1Q13976 671 aa15.17■□□□□ 0.02
LIMCH1-220ENST00000514190 RTN1Q16799 776 aa15.17■□□□□ 0.02
LIMCH1-220ENST00000514190 NOL9Q5SY16 702 aaKnown RBP15.17■□□□□ 0.02
LIMCH1-220ENST00000514190 LRRC47Q8N1G4 583 aaKnown RBP15.17■□□□□ 0.02
LIMCH1-220ENST00000514190 SPRYD3Q8NCJ5 442 aa15.17■□□□□ 0.02
LIMCH1-220ENST00000514190 ZKSCAN4Q969J2 545 aaPredicted RBP15.17■□□□□ 0.02
LIMCH1-220ENST00000514190 LLPHQ9BRT6 129 aaKnown RBP15.17■□□□□ 0.02
LIMCH1-220ENST00000514190 ARHGEF10LQ9HCE6 1279 aa15.17■□□□□ 0.02
LIMCH1-220ENST00000514190 WBP1LQ9NX94 342 aa15.17■□□□□ 0.02
LIMCH1-220ENST00000514190 ZSCAN21Q9Y5A6 473 aaPredicted RBP15.17■□□□□ 0.02
LIMCH1-220ENST00000514190 GREB1LQ9C091 1923 aaPredicted RBP15.16■□□□□ 0.02
LIMCH1-220ENST00000514190 A0A1W2PRG0 241 aa15.16■□□□□ 0.02
LIMCH1-220ENST00000514190 USP17L5A8MUK1 530 aa15.16■□□□□ 0.02
LIMCH1-220ENST00000514190 CDC27P30260 824 aa15.16■□□□□ 0.02
LIMCH1-220ENST00000514190 IREB2P48200 963 aaKnown RBP15.16■□□□□ 0.02
LIMCH1-220ENST00000514190 MAP2K1Q02750 393 aaPredicted RBP15.16■□□□□ 0.02
LIMCH1-220ENST00000514190 GRM4Q14833 912 aa15.16■□□□□ 0.02
LIMCH1-220ENST00000514190 MAP3K11Q16584 847 aa15.16■□□□□ 0.02
LIMCH1-220ENST00000514190 PPP1R3FQ6ZSY5 799 aaPredicted RBP15.16■□□□□ 0.02
LIMCH1-220ENST00000514190 CCDC144CPQ8IYA2 1237 aa15.16■□□□□ 0.02
LIMCH1-220ENST00000514190 ACER1Q8TDN7 264 aa15.16■□□□□ 0.02
LIMCH1-220ENST00000514190 PICK1Q9NRD5 415 aa15.16■□□□□ 0.02
LIMCH1-220ENST00000514190 FOXD4L1Q9NU39 408 aa15.16■□□□□ 0.02
LIMCH1-220ENST00000514190 RBM28Q9NW13 759 aaKnown RBP15.16■□□□□ 0.02
LIMCH1-220ENST00000514190 TMX2Q9Y320 296 aa15.16■□□□□ 0.02
LIMCH1-220ENST00000514190 PAPPA2Q9BXP8 1791 aa15.16■□□□□ 0.02
LIMCH1-220ENST00000514190 FOXN1O15353 648 aa15.15■□□□□ 0.02
LIMCH1-220ENST00000514190 CTDNEP1O95476 244 aa15.15■□□□□ 0.02
LIMCH1-220ENST00000514190 SNHG28P0DPA3 235 aa15.15■□□□□ 0.02
LIMCH1-220ENST00000514190 KIF5BP33176 963 aa15.15■□□□□ 0.02
LIMCH1-220ENST00000514190 MAP2K2P36507 400 aa15.15■□□□□ 0.02
LIMCH1-220ENST00000514190 NTRK3Q16288 839 aa15.15■□□□□ 0.02
LIMCH1-220ENST00000514190 CPLX2Q6PUV4 134 aaKnown RBP15.15■□□□□ 0.02
LIMCH1-220ENST00000514190 GMCL1P1Q8NEA9 526 aa15.15■□□□□ 0.02
LIMCH1-220ENST00000514190 CTCFLQ8NI51 663 aaPredicted RBP15.15■□□□□ 0.02
LIMCH1-220ENST00000514190 WDR18Q9BV38 432 aa15.15■□□□□ 0.02
LIMCH1-220ENST00000514190 CWC22Q9HCG8 908 aaKnown RBP15.15■□□□□ 0.02
LIMCH1-220ENST00000514190 FRMD4AQ9P2Q2 1039 aaPredicted RBP15.15■□□□□ 0.02
LIMCH1-220ENST00000514190 SMC3Q9UQE7 1217 aa15.15■□□□□ 0.02
LIMCH1-220ENST00000514190 PALM3A6NDB9 673 aaPredicted RBP15.14■□□□□ 0.01
LIMCH1-220ENST00000514190 F5H6K3 240 aa15.14■□□□□ 0.01
LIMCH1-220ENST00000514190 CPLX1O14810 134 aa15.14■□□□□ 0.01
LIMCH1-220ENST00000514190 AOC2O75106 756 aa15.14■□□□□ 0.01
LIMCH1-220ENST00000514190 PDHBP11177 359 aa15.14■□□□□ 0.01
LIMCH1-220ENST00000514190 IFNAR1P17181 557 aa15.14■□□□□ 0.01
LIMCH1-220ENST00000514190 PTPRAP18433 802 aa15.14■□□□□ 0.01
LIMCH1-220ENST00000514190 GNAQP50148 359 aa15.14■□□□□ 0.01
LIMCH1-220ENST00000514190 FKBP1BP68106 108 aa15.14■□□□□ 0.01
LIMCH1-220ENST00000514190 KLRC3Q07444 240 aa15.14■□□□□ 0.01
LIMCH1-220ENST00000514190 TTLL12Q14166 644 aaPredicted RBP15.14■□□□□ 0.01
LIMCH1-220ENST00000514190 RGMBQ6NW40 437 aa15.14■□□□□ 0.01
LIMCH1-220ENST00000514190 ARMC9Q7Z3E5 817 aa15.14■□□□□ 0.01
LIMCH1-220ENST00000514190 CCDC84Q86UT8 332 aaPredicted RBP15.14■□□□□ 0.01
LIMCH1-220ENST00000514190 NSUN7Q8NE18 718 aaKnown RBP15.14■□□□□ 0.01
LIMCH1-220ENST00000514190 SMARCC2Q8TAQ2 1214 aa15.14■□□□□ 0.01
LIMCH1-220ENST00000514190 SH2D4AQ9H788 454 aa15.14■□□□□ 0.01
LIMCH1-220ENST00000514190 MYH8P13535 1937 aa15.13■□□□□ 0.01
LIMCH1-220ENST00000514190 UNCXA6NJT0 531 aa15.13■□□□□ 0.01
LIMCH1-220ENST00000514190 JAK2O60674 1132 aa15.13■□□□□ 0.01
LIMCH1-220ENST00000514190 CDKL5O76039 1030 aa15.13■□□□□ 0.01
LIMCH1-220ENST00000514190 PARP1P09874 1014 aaKnown RBP15.13■□□□□ 0.01
LIMCH1-220ENST00000514190 FUT2Q10981 343 aa15.13■□□□□ 0.01
LIMCH1-220ENST00000514190 VGLL4Q14135 290 aa15.13■□□□□ 0.01
LIMCH1-220ENST00000514190 LDLRAD1Q5T700 205 aa15.13■□□□□ 0.01
LIMCH1-220ENST00000514190 COL13A1Q5TAT6 717 aaPredicted RBP15.13■□□□□ 0.01
LIMCH1-220ENST00000514190 SLFN13Q68D06 897 aa15.13■□□□□ 0.01
LIMCH1-220ENST00000514190 USP17L2Q6R6M4 530 aa15.13■□□□□ 0.01
LIMCH1-220ENST00000514190 TMTC3Q6ZXV5 915 aa15.13■□□□□ 0.01
LIMCH1-220ENST00000514190 MOB2Q70IA6 237 aa15.13■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms