RNA–Protein interactions for RNA: ENST00000514093.5

SQSTM1-215, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 842 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-215ENST00000514093 OLFML2BQ68BL8 750 aa24.79■■□□□ 1.56
SQSTM1-215ENST00000514093 TTC6Q86TZ1 520 aa24.79■■□□□ 1.56
SQSTM1-215ENST00000514093 FRAT1Q92837 279 aaPredicted RBP24.79■■□□□ 1.56
SQSTM1-215ENST00000514093 ZNF512BQ96KM6 892 aaPredicted RBP24.79■■□□□ 1.56
SQSTM1-215ENST00000514093 DBNLQ9UJU6 430 aaKnown RBP24.79■■□□□ 1.56
SQSTM1-215ENST00000514093 SEPT4O43236 478 aa24.78■■□□□ 1.56
SQSTM1-215ENST00000514093 SURF6O75683 361 aaKnown RBP24.78■■□□□ 1.56
SQSTM1-215ENST00000514093 ERCC3P19447 782 aa24.78■■□□□ 1.56
SQSTM1-215ENST00000514093 SMAD3P84022 425 aaKnown RBP24.78■■□□□ 1.56
SQSTM1-215ENST00000514093 COG2Q14746 738 aa24.78■■□□□ 1.56
SQSTM1-215ENST00000514093 PRDM6Q9NQX0 595 aa24.78■■□□□ 1.56
SQSTM1-215ENST00000514093 A0A1W2PRG0 241 aa24.77■■□□□ 1.56
SQSTM1-215ENST00000514093 BCAR3O75815 825 aa24.77■■□□□ 1.56
SQSTM1-215ENST00000514093 FOSL2P15408 326 aa24.77■■□□□ 1.56
SQSTM1-215ENST00000514093 POLA2Q14181 598 aa24.77■■□□□ 1.56
SQSTM1-215ENST00000514093 SNX17Q15036 470 aa24.77■■□□□ 1.56
SQSTM1-215ENST00000514093 SPATC1LQ9H0A9 340 aa24.77■■□□□ 1.56
SQSTM1-215ENST00000514093 ANTXR1Q9H6X2 564 aa24.77■■□□□ 1.56
SQSTM1-215ENST00000514093 STRNO43815 780 aa24.76■■□□□ 1.55
SQSTM1-215ENST00000514093 EVX2Q03828 476 aa24.76■■□□□ 1.55
SQSTM1-215ENST00000514093 LRRC41Q15345 812 aa24.76■■□□□ 1.55
SQSTM1-215ENST00000514093 TANGO6Q9C0B7 1094 aa24.76■■□□□ 1.55
SQSTM1-215ENST00000514093 HOXC10Q9NYD6 342 aa24.76■■□□□ 1.55
SQSTM1-215ENST00000514093 MPHOSPH10O00566 681 aaKnown RBP24.75■■□□□ 1.55
SQSTM1-215ENST00000514093 IPO8O15397 1037 aaKnown RBP24.75■■□□□ 1.55
SQSTM1-215ENST00000514093 IGSF3O75054 1194 aa24.75■■□□□ 1.55
SQSTM1-215ENST00000514093 ITGB8P26012 769 aa24.75■■□□□ 1.55
SQSTM1-215ENST00000514093 TLE2Q04725 743 aa24.75■■□□□ 1.55
SQSTM1-215ENST00000514093 PLS1Q14651 629 aa24.75■■□□□ 1.55
SQSTM1-215ENST00000514093 FAM47AQ5JRC9 791 aa24.75■■□□□ 1.55
SQSTM1-215ENST00000514093 EPHB4P54760 987 aa24.74■■□□□ 1.55
SQSTM1-215ENST00000514093 KIAA1755Q5JYT7 1200 aa24.74■■□□□ 1.55
SQSTM1-215ENST00000514093 NCAPG2Q86XI2 1143 aa24.74■■□□□ 1.55
SQSTM1-215ENST00000514093 SSH3Q8TE77 659 aa24.74■■□□□ 1.55
SQSTM1-215ENST00000514093 C1orf115Q9H7X2 142 aa24.74■■□□□ 1.55
SQSTM1-215ENST00000514093 POLR3DP05423 398 aaPredicted RBP24.73■■□□□ 1.55
SQSTM1-215ENST00000514093 ATP8B2P98198 1209 aa24.73■■□□□ 1.55
SQSTM1-215ENST00000514093 SAMD1Q6SPF0 538 aaPredicted RBP24.73■■□□□ 1.55
SQSTM1-215ENST00000514093 TMEM57Q8N5G2 664 aa24.73■■□□□ 1.55
SQSTM1-215ENST00000514093 EAF2Q96CJ1 260 aaPredicted RBP24.73■■□□□ 1.55
SQSTM1-215ENST00000514093 CERS3Q8IU89 383 aa24.72■■□□□ 1.55
SQSTM1-215ENST00000514093 SHCBP1Q8NEM2 672 aa24.72■■□□□ 1.55
SQSTM1-215ENST00000514093 RNPC3Q96LT9 517 aaKnown RBP24.72■■□□□ 1.55
SQSTM1-215ENST00000514093 SLC5A4Q9NY91 659 aa24.72■■□□□ 1.55
SQSTM1-215ENST00000514093 GABPAQ06546 454 aa24.71■■□□□ 1.55
SQSTM1-215ENST00000514093 MAP3K12Q12852 859 aa24.71■■□□□ 1.55
SQSTM1-215ENST00000514093 MAML3Q96JK9 1138 aa24.71■■□□□ 1.55
SQSTM1-215ENST00000514093 RIOK1Q9BRS2 568 aaKnown RBP24.71■■□□□ 1.55
SQSTM1-215ENST00000514093 TACC3Q9Y6A5 838 aa24.71■■□□□ 1.55
SQSTM1-215ENST00000514093 ZNF236Q9UL36 1845 aa24.7■■□□□ 1.55
SQSTM1-215ENST00000514093 DSG3P32926 999 aa24.7■■□□□ 1.54
SQSTM1-215ENST00000514093 C1orf53Q5VUE5 145 aa24.7■■□□□ 1.54
SQSTM1-215ENST00000514093 ATG4CQ96DT6 458 aa24.7■■□□□ 1.54
SQSTM1-215ENST00000514093 MROH8Q9H579 483 aa24.7■■□□□ 1.54
SQSTM1-215ENST00000514093 CLTBP09497 229 aa24.69■■□□□ 1.54
SQSTM1-215ENST00000514093 GRIN2CQ14957 1233 aa24.69■■□□□ 1.54
SQSTM1-215ENST00000514093 SPICE1Q8N0Z3 855 aa24.69■■□□□ 1.54
SQSTM1-215ENST00000514093 SYMPKQ92797 1274 aaKnown RBP24.69■■□□□ 1.54
SQSTM1-215ENST00000514093 XPNPEP3Q9NQH7 507 aa24.69■■□□□ 1.54
SQSTM1-215ENST00000514093 PHF24Q9UPV7 400 aa24.69■■□□□ 1.54
SQSTM1-215ENST00000514093 MAGEB6P1A0A0J9YX57 407 aa24.68■■□□□ 1.54
SQSTM1-215ENST00000514093 PQBP1O60828 265 aaKnown RBP24.68■■□□□ 1.54
SQSTM1-215ENST00000514093 FLOT1O75955 427 aa24.68■■□□□ 1.54
SQSTM1-215ENST00000514093 PGK1P00558 417 aa24.68■■□□□ 1.54
SQSTM1-215ENST00000514093 CLEC10AQ8IUN9 316 aa24.68■■□□□ 1.54
SQSTM1-215ENST00000514093 USP38Q8NB14 1042 aa24.68■■□□□ 1.54
SQSTM1-215ENST00000514093 SLC44A5Q8NCS7 719 aa24.68■■□□□ 1.54
SQSTM1-215ENST00000514093 MCM9Q9NXL9 1143 aa24.68■■□□□ 1.54
SQSTM1-215ENST00000514093 NOP58Q9Y2X3 529 aaKnown RBP24.68■■□□□ 1.54
SQSTM1-215ENST00000514093 CYP2D6P10635 497 aa24.67■■□□□ 1.54
SQSTM1-215ENST00000514093 RARBP10826 455 aa24.67■■□□□ 1.54
SQSTM1-215ENST00000514093 FCER1AP12319 257 aa24.67■■□□□ 1.54
SQSTM1-215ENST00000514093 RAG1P15918 1043 aa24.67■■□□□ 1.54
SQSTM1-215ENST00000514093 ABRAQ8N0Z2 381 aa24.67■■□□□ 1.54
SQSTM1-215ENST00000514093 MB21D1Q8N884 522 aa24.67■■□□□ 1.54
SQSTM1-215ENST00000514093 SMCHD1A6NHR9 2005 aa24.66■■□□□ 1.54
SQSTM1-215ENST00000514093 PGK2P07205 417 aa24.66■■□□□ 1.54
SQSTM1-215ENST00000514093 TAL1P17542 331 aaPredicted RBP24.66■■□□□ 1.54
SQSTM1-215ENST00000514093 A0A0G2JMZ2 1700 aa24.66■■□□□ 1.54
SQSTM1-215ENST00000514093 KIAA0355O15063 1070 aa24.65■■□□□ 1.54
SQSTM1-215ENST00000514093 TMEM132BQ14DG7 1078 aa24.65■■□□□ 1.54
SQSTM1-215ENST00000514093 SIAH1Q8IUQ4 282 aa24.65■■□□□ 1.54
SQSTM1-215ENST00000514093 SDR42E1Q8WUS8 393 aa24.65■■□□□ 1.54
SQSTM1-215ENST00000514093 LENG1Q96BZ8 264 aaPredicted RBP24.65■■□□□ 1.54
SQSTM1-215ENST00000514093 DYNLL2Q96FJ2 89 aa24.65■■□□□ 1.54
SQSTM1-215ENST00000514093 TMEM39AQ9NV64 488 aa24.65■■□□□ 1.54
SQSTM1-215ENST00000514093 TMEM265A0A087WTH1 108 aa24.64■■□□□ 1.54
SQSTM1-215ENST00000514093 A0A1W2PQ45 241 aaPredicted RBP24.64■■□□□ 1.54
SQSTM1-215ENST00000514093 A0A1W2PQY0 241 aa24.64■■□□□ 1.54
SQSTM1-215ENST00000514093 DNAJB2P25686 324 aa24.64■■□□□ 1.54
SQSTM1-215ENST00000514093 FPGSQ05932 587 aa24.64■■□□□ 1.54
SQSTM1-215ENST00000514093 TMEM179Q6ZVK1 233 aa24.64■■□□□ 1.54
SQSTM1-215ENST00000514093 RNF180Q86T96 592 aa24.64■■□□□ 1.54
SQSTM1-215ENST00000514093 CRNKL1Q9BZJ0 848 aaKnown RBP24.64■■□□□ 1.54
SQSTM1-215ENST00000514093 TTC28Q96AY4 2481 aa24.64■■□□□ 1.53
SQSTM1-215ENST00000514093 AACSQ86V21 672 aa24.63■■□□□ 1.53
SQSTM1-215ENST00000514093 MMP19Q99542 508 aa24.63■■□□□ 1.53
SQSTM1-215ENST00000514093 TINF2Q9BSI4 451 aa24.63■■□□□ 1.53
SQSTM1-215ENST00000514093 NAV1Q8NEY1 1877 aa24.63■■□□□ 1.53
SQSTM1-215ENST00000514093 HSFX4A0A1B0GTS1 333 aaPredicted RBP24.62■■□□□ 1.53
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms