RNA–Protein interactions for RNA: ENST00000512813.5

CLCN3-208, Transcript of chloride voltage-gated channel 3, humanhuman

TSL 4

Gene CLCN3, Length 563 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3-208ENST00000512813 KIF16BQ96L93 1317 aa11.85□□□□□ -0.51
CLCN3-208ENST00000512813 C19orf81C9J6K1 198 aa11.84□□□□□ -0.51
CLCN3-208ENST00000512813 ATP2A2P16615 1042 aaKnown RBP11.84□□□□□ -0.51
CLCN3-208ENST00000512813 KCNA5P22460 613 aa11.84□□□□□ -0.51
CLCN3-208ENST00000512813 ACLYP53396 1101 aa11.84□□□□□ -0.51
CLCN3-208ENST00000512813 RRP1BQ14684 758 aaKnown RBP11.84□□□□□ -0.51
CLCN3-208ENST00000512813 PUS10Q3MIT2 529 aaKnown RBP11.84□□□□□ -0.51
CLCN3-208ENST00000512813 NCBP3Q53F19 620 aaKnown RBP11.84□□□□□ -0.51
CLCN3-208ENST00000512813 PRAMEF19Q5SWL8 479 aa11.84□□□□□ -0.51
CLCN3-208ENST00000512813 DPP9Q86TI2 863 aa11.84□□□□□ -0.51
CLCN3-208ENST00000512813 ARNTL2Q8WYA1 636 aa11.84□□□□□ -0.51
CLCN3-208ENST00000512813 CHMP4AQ9BY43 222 aa11.84□□□□□ -0.51
CLCN3-208ENST00000512813 LMCD1Q9NZU5 365 aa11.84□□□□□ -0.51
CLCN3-208ENST00000512813 SMCHD1A6NHR9 2005 aa11.83□□□□□ -0.52
CLCN3-208ENST00000512813 C19orf67A6NJJ6 358 aa11.83□□□□□ -0.52
CLCN3-208ENST00000512813 ELL2O00472 640 aaPredicted RBP11.83□□□□□ -0.52
CLCN3-208ENST00000512813 ADORA2AP29274 412 aa11.83□□□□□ -0.52
CLCN3-208ENST00000512813 ZEB1P37275 1124 aaPredicted RBP11.83□□□□□ -0.52
CLCN3-208ENST00000512813 CDK7P50613 346 aa11.83□□□□□ -0.52
CLCN3-208ENST00000512813 ZP2Q05996 745 aa11.83□□□□□ -0.52
CLCN3-208ENST00000512813 NEUROD2Q15784 382 aa11.83□□□□□ -0.52
CLCN3-208ENST00000512813 ASCL5Q7RTU5 278 aa11.83□□□□□ -0.52
CLCN3-208ENST00000512813 PUS3Q9BZE2 481 aaKnown RBP11.83□□□□□ -0.52
CLCN3-208ENST00000512813 RNF39Q9H2S5 420 aa11.83□□□□□ -0.52
CLCN3-208ENST00000512813 PRKAG3Q9UGI9 489 aa11.83□□□□□ -0.52
CLCN3-208ENST00000512813 NRBP1Q9UHY1 535 aa11.83□□□□□ -0.52
CLCN3-208ENST00000512813 COL4A6Q14031 1691 aa11.83□□□□□ -0.52
CLCN3-208ENST00000512813 DMXL1Q9Y485 3027 aa11.82□□□□□ -0.52
CLCN3-208ENST00000512813 USP24Q9UPU5 2620 aa11.82□□□□□ -0.52
CLCN3-208ENST00000512813 PRR23AA6NEV1 266 aa11.82□□□□□ -0.52
CLCN3-208ENST00000512813 MOXD2PA6NHM9 499 aa11.82□□□□□ -0.52
CLCN3-208ENST00000512813 ADAMTS4O75173 837 aa11.82□□□□□ -0.52
CLCN3-208ENST00000512813 CYP2C18P33260 490 aa11.82□□□□□ -0.52
CLCN3-208ENST00000512813 TAP1Q03518 808 aa11.82□□□□□ -0.52
CLCN3-208ENST00000512813 PICALMQ13492 652 aa11.82□□□□□ -0.52
CLCN3-208ENST00000512813 HERC4Q5GLZ8 1057 aaPredicted RBP11.82□□□□□ -0.52
CLCN3-208ENST00000512813 LBX2Q6XYB7 198 aa11.82□□□□□ -0.52
CLCN3-208ENST00000512813 LINS1Q8NG48 757 aa11.82□□□□□ -0.52
CLCN3-208ENST00000512813 CNTNAP3BQ96NU0 1288 aa11.82□□□□□ -0.52
CLCN3-208ENST00000512813 CNTNAP3Q9BZ76 1288 aa11.82□□□□□ -0.52
CLCN3-208ENST00000512813 UPF3BQ9BZI7 483 aaKnown RBP11.82□□□□□ -0.52
CLCN3-208ENST00000512813 DNAH14Q0VDD8 3507 aa11.82□□□□□ -0.52
CLCN3-208ENST00000512813 ELP1O95163 1332 aa11.82□□□□□ -0.52
CLCN3-208ENST00000512813 MYH2Q9UKX2 1941 aa11.82□□□□□ -0.52
CLCN3-208ENST00000512813 USP17L10C9JJH3 530 aa11.81□□□□□ -0.52
CLCN3-208ENST00000512813 STRNO43815 780 aa11.81□□□□□ -0.52
CLCN3-208ENST00000512813 NPM3O75607 178 aaKnown RBP11.81□□□□□ -0.52
CLCN3-208ENST00000512813 LDHBP07195 334 aaKnown RBP11.81□□□□□ -0.52
CLCN3-208ENST00000512813 ZNF853P0CG23 659 aa11.81□□□□□ -0.52
CLCN3-208ENST00000512813 KCTD2Q14681 263 aa11.81□□□□□ -0.52
CLCN3-208ENST00000512813 FAM126BQ8IXS8 530 aa11.81□□□□□ -0.52
CLCN3-208ENST00000512813 ATOH1Q92858 354 aaPredicted RBP11.81□□□□□ -0.52
CLCN3-208ENST00000512813 DMDP11532 3685 aa11.81□□□□□ -0.52
CLCN3-208ENST00000512813 VPS13AQ96RL7 3174 aa11.81□□□□□ -0.52
CLCN3-208ENST00000512813 MAP1BP46821 2468 aaKnown RBP11.8□□□□□ -0.52
CLCN3-208ENST00000512813 ZBBXA8MT70 800 aa11.8□□□□□ -0.52
CLCN3-208ENST00000512813 COBLO75128 1261 aa11.8□□□□□ -0.52
CLCN3-208ENST00000512813 ARHGEF15O94989 841 aa11.8□□□□□ -0.52
CLCN3-208ENST00000512813 ASNSP08243 561 aa11.8□□□□□ -0.52
CLCN3-208ENST00000512813 SUGP1Q8IWZ8 645 aaKnown RBP11.8□□□□□ -0.52
CLCN3-208ENST00000512813 VGLL2Q8N8G2 317 aa11.8□□□□□ -0.52
CLCN3-208ENST00000512813 C8orf58Q8NAV2 365 aa11.8□□□□□ -0.52
CLCN3-208ENST00000512813 SLC5A4Q9NY91 659 aa11.8□□□□□ -0.52
CLCN3-208ENST00000512813 BTBD7Q9P203 1132 aa11.8□□□□□ -0.52
CLCN3-208ENST00000512813 TRPC6Q9Y210 931 aa11.8□□□□□ -0.52
CLCN3-208ENST00000512813 SALL1Q9NSC2 1324 aa11.8□□□□□ -0.52
CLCN3-208ENST00000512813 SETXQ7Z333 2677 aaKnown RBP11.8□□□□□ -0.52
CLCN3-208ENST00000512813 SOWAHBA6NEL2 793 aa11.79□□□□□ -0.52
CLCN3-208ENST00000512813 TLR3O15455 904 aaKnown RBP11.79□□□□□ -0.52
CLCN3-208ENST00000512813 IRS1P35568 1242 aa11.79□□□□□ -0.52
CLCN3-208ENST00000512813 CCSAPQ6IQ19 270 aaPredicted RBP11.79□□□□□ -0.52
CLCN3-208ENST00000512813 KLHDC9Q8NEP7 349 aa11.79□□□□□ -0.52
CLCN3-208ENST00000512813 NEK9Q8TD19 979 aa11.79□□□□□ -0.52
CLCN3-208ENST00000512813 PBXIP1Q96AQ6 731 aa11.79□□□□□ -0.52
CLCN3-208ENST00000512813 MAML3Q96JK9 1138 aa11.79□□□□□ -0.52
CLCN3-208ENST00000512813 GLT1D1Q96MS3 346 aa11.79□□□□□ -0.52
CLCN3-208ENST00000512813 EMILIN3Q9NT22 766 aa11.79□□□□□ -0.52
CLCN3-208ENST00000512813 MUTYHQ9UIF7 546 aa11.79□□□□□ -0.52
CLCN3-208ENST00000512813 HERC5Q9UII4 1024 aaKnown RBP11.79□□□□□ -0.52
CLCN3-208ENST00000512813 SYNRGQ9UMZ2 1314 aa11.79□□□□□ -0.52
CLCN3-208ENST00000512813 FASNP49327 2511 aaKnown RBP11.79□□□□□ -0.52
CLCN3-208ENST00000512813 FAM208BQ5VWN6 2430 aa11.78□□□□□ -0.52
CLCN3-208ENST00000512813 A0A0U1RQG5 324 aaPredicted RBP11.78□□□□□ -0.52
CLCN3-208ENST00000512813 USP17L15C9J2P7 530 aa11.78□□□□□ -0.52
CLCN3-208ENST00000512813 USP17L13C9JLJ4 530 aa11.78□□□□□ -0.52
CLCN3-208ENST00000512813 USP17L11C9JVI0 530 aa11.78□□□□□ -0.52
CLCN3-208ENST00000512813 USP17L18D6R9N7 530 aa11.78□□□□□ -0.52
CLCN3-208ENST00000512813 USP17L22D6RA61 530 aa11.78□□□□□ -0.52
CLCN3-208ENST00000512813 USP17L17D6RBQ6 530 aa11.78□□□□□ -0.52
CLCN3-208ENST00000512813 USP17L19D6RCP7 530 aa11.78□□□□□ -0.52
CLCN3-208ENST00000512813 USP17L20D6RJB6 530 aa11.78□□□□□ -0.52
CLCN3-208ENST00000512813 ARVCFO00192 962 aa11.78□□□□□ -0.52
CLCN3-208ENST00000512813 PDE8BO95263 885 aa11.78□□□□□ -0.52
CLCN3-208ENST00000512813 CD4P01730 458 aa11.78□□□□□ -0.52
CLCN3-208ENST00000512813 AKR1A1P14550 325 aa11.78□□□□□ -0.52
CLCN3-208ENST00000512813 USP17L24Q0WX57 530 aa11.78□□□□□ -0.52
CLCN3-208ENST00000512813 USP17L2Q6R6M4 530 aa11.78□□□□□ -0.52
CLCN3-208ENST00000512813 ADHFE1Q8IWW8 467 aa11.78□□□□□ -0.52
CLCN3-208ENST00000512813 RPUSD2Q8IZ73 545 aaKnown RBP11.78□□□□□ -0.52
CLCN3-208ENST00000512813 DNAAF4Q8WXU2 420 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms