RNA–Protein interactions for RNA: ENST00000509601.1

TPM3-220, Transcript of tropomyosin 3, humanhuman

TSL 4

Gene TPM3, Length 543 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-220ENST00000509601 ICA1Q05084 483 aa21.49■■□□□ 1.03
TPM3-220ENST00000509601 AAMPQ13685 434 aa21.49■■□□□ 1.03
TPM3-220ENST00000509601 ZMYM1Q5SVZ6 1142 aa21.49■■□□□ 1.03
TPM3-220ENST00000509601 PLEKHH3Q7Z736 793 aa21.49■■□□□ 1.03
TPM3-220ENST00000509601 IFNL3Q8IZI9 196 aa21.49■■□□□ 1.03
TPM3-220ENST00000509601 TRIB2Q92519 343 aa21.49■■□□□ 1.03
TPM3-220ENST00000509601 MINDY4BA8MYZ0 360 aa21.48■■□□□ 1.03
TPM3-220ENST00000509601 HMGCRP04035 888 aa21.48■■□□□ 1.03
TPM3-220ENST00000509601 EEF2P13639 858 aaKnown RBP21.48■■□□□ 1.03
TPM3-220ENST00000509601 LRRFIP1Q32MZ4 808 aaKnown RBP21.48■■□□□ 1.03
TPM3-220ENST00000509601 DEFB118Q96PH6 123 aa21.48■■□□□ 1.03
TPM3-220ENST00000509601 VCPKMTQ9H867 229 aa21.48■■□□□ 1.03
TPM3-220ENST00000509601 KANSL2Q9H9L4 492 aa21.48■■□□□ 1.03
TPM3-220ENST00000509601 ARHGEF10LQ9HCE6 1279 aa21.48■■□□□ 1.03
TPM3-220ENST00000509601 MYH8P13535 1937 aa21.47■■□□□ 1.03
TPM3-220ENST00000509601 RASA1P20936 1047 aa21.47■■□□□ 1.03
TPM3-220ENST00000509601 DSG3P32926 999 aa21.47■■□□□ 1.03
TPM3-220ENST00000509601 PDE1AP54750 535 aa21.47■■□□□ 1.03
TPM3-220ENST00000509601 CCAR1Q8IX12 1150 aaKnown RBP21.47■■□□□ 1.03
TPM3-220ENST00000509601 STK11IPQ8N1F8 1099 aa21.47■■□□□ 1.03
TPM3-220ENST00000509601 LPAR1Q92633 364 aa21.47■■□□□ 1.03
TPM3-220ENST00000509601 FSD1Q9BTV5 496 aa21.47■■□□□ 1.03
TPM3-220ENST00000509601 CRISPLD2Q9H0B8 497 aa21.47■■□□□ 1.03
TPM3-220ENST00000509601 IGHDP01880 384 aa21.46■■□□□ 1.03
TPM3-220ENST00000509601 CCNA1P78396 465 aa21.46■■□□□ 1.03
TPM3-220ENST00000509601 SPICE1Q8N0Z3 855 aa21.46■■□□□ 1.03
TPM3-220ENST00000509601 EXOC6Q8TAG9 804 aa21.46■■□□□ 1.03
TPM3-220ENST00000509601 SOCS4Q8WXH5 440 aa21.46■■□□□ 1.03
TPM3-220ENST00000509601 ZBTB47Q9UFB7 747 aaPredicted RBP21.46■■□□□ 1.03
TPM3-220ENST00000509601 RLFQ13129 1914 aa21.46■■□□□ 1.03
TPM3-220ENST00000509601 RPTORQ8N122 1335 aa21.46■■□□□ 1.03
TPM3-220ENST00000509601 TFRCP02786 760 aaKnown RBP21.45■■□□□ 1.02
TPM3-220ENST00000509601 APPP05067 770 aa21.45■■□□□ 1.02
TPM3-220ENST00000509601 PTPREP23469 700 aa21.45■■□□□ 1.02
TPM3-220ENST00000509601 MAP3K21Q5TCX8 1036 aa21.45■■□□□ 1.02
TPM3-220ENST00000509601 SMC5Q8IY18 1101 aa21.45■■□□□ 1.02
TPM3-220ENST00000509601 TANGO6Q9C0B7 1094 aa21.45■■□□□ 1.02
TPM3-220ENST00000509601 XRN2Q9H0D6 950 aaKnown RBP eCLIP21.45■■□□□ 1.02
TPM3-220ENST00000509601 SH2D4AQ9H788 454 aa21.45■■□□□ 1.02
TPM3-220ENST00000509601 MKNK2Q9HBH9 465 aa21.45■■□□□ 1.02
TPM3-220ENST00000509601 CAPN2P17655 700 aa21.44■■□□□ 1.02
TPM3-220ENST00000509601 RGS2P41220 211 aa21.44■■□□□ 1.02
TPM3-220ENST00000509601 TDO2P48775 406 aa21.44■■□□□ 1.02
TPM3-220ENST00000509601 ATP2B2Q01814 1243 aa21.44■■□□□ 1.02
TPM3-220ENST00000509601 MAP2K5Q13163 448 aa21.44■■□□□ 1.02
TPM3-220ENST00000509601 CCL14Q16627 93 aa21.44■■□□□ 1.02
TPM3-220ENST00000509601 MOV10L1Q9BXT6 1211 aaKnown RBP21.44■■□□□ 1.02
TPM3-220ENST00000509601 RWDD1Q9H446 243 aaPredicted RBP21.44■■□□□ 1.02
TPM3-220ENST00000509601 HMX1Q9NP08 348 aaPredicted RBP21.44■■□□□ 1.02
TPM3-220ENST00000509601 ROBO3Q96MS0 1386 aa21.44■■□□□ 1.02
TPM3-220ENST00000509601 CEP290O15078 2479 aa21.43■■□□□ 1.02
TPM3-220ENST00000509601 SLC15A5A6NIM6 579 aa21.43■■□□□ 1.02
TPM3-220ENST00000509601 WDR46O15213 610 aaKnown RBP21.43■■□□□ 1.02
TPM3-220ENST00000509601 FOXP2O15409 715 aa21.43■■□□□ 1.02
TPM3-220ENST00000509601 EVI5LQ96CN4 794 aa21.43■■□□□ 1.02
TPM3-220ENST00000509601 ADAMTS5Q9UNA0 930 aa21.43■■□□□ 1.02
TPM3-220ENST00000509601 IGKV6D-41A0A0C4DH26 115 aa21.42■■□□□ 1.02
TPM3-220ENST00000509601 PRDM1O75626 825 aa21.42■■□□□ 1.02
TPM3-220ENST00000509601 FLOT1O75955 427 aa21.42■■□□□ 1.02
TPM3-220ENST00000509601 CACNB2Q08289 660 aaPredicted RBP21.42■■□□□ 1.02
TPM3-220ENST00000509601 CCDC129Q6ZRS4 1044 aa21.42■■□□□ 1.02
TPM3-220ENST00000509601 TRMT44Q8IYL2 757 aaKnown RBP21.42■■□□□ 1.02
TPM3-220ENST00000509601 ATG4CQ96DT6 458 aa21.42■■□□□ 1.02
TPM3-220ENST00000509601 LNPKQ9C0E8 428 aa21.42■■□□□ 1.02
TPM3-220ENST00000509601 SPATC1LQ9H0A9 340 aa21.42■■□□□ 1.02
TPM3-220ENST00000509601 NYAP2Q9P242 653 aa21.42■■□□□ 1.02
TPM3-220ENST00000509601 FARP2O94887 1054 aaPredicted RBP21.41■■□□□ 1.02
TPM3-220ENST00000509601 PRKAR2AP13861 404 aaKnown RBP21.41■■□□□ 1.02
TPM3-220ENST00000509601 GRB14Q14449 540 aa21.41■■□□□ 1.02
TPM3-220ENST00000509601 WDR78Q5VTH9 848 aa21.41■■□□□ 1.02
TPM3-220ENST00000509601 B4GALNT3Q6L9W6 998 aa21.41■■□□□ 1.02
TPM3-220ENST00000509601 NACAP1Q9BZK3 213 aa21.41■■□□□ 1.02
TPM3-220ENST00000509601 FBXO28Q9NVF7 368 aa21.41■■□□□ 1.02
TPM3-220ENST00000509601 FLRT1Q9NZU1 646 aa21.41■■□□□ 1.02
TPM3-220ENST00000509601 GREB1LQ9C091 1923 aaPredicted RBP21.41■■□□□ 1.02
TPM3-220ENST00000509601 IGHA2P01877 340 aa21.4■■□□□ 1.02
TPM3-220ENST00000509601 HOXC6P09630 235 aa21.4■■□□□ 1.02
TPM3-220ENST00000509601 ZKSCAN1P17029 563 aaPredicted RBP21.4■■□□□ 1.02
TPM3-220ENST00000509601 ZNF444Q8N0Y2 327 aaPredicted RBP21.4■■□□□ 1.02
TPM3-220ENST00000509601 MB21D1Q8N884 522 aa21.4■■□□□ 1.02
TPM3-220ENST00000509601 SHCBP1Q8NEM2 672 aa21.4■■□□□ 1.02
TPM3-220ENST00000509601 NPLOC4Q8TAT6 608 aa21.4■■□□□ 1.02
TPM3-220ENST00000509601 MKL1Q969V6 931 aa21.4■■□□□ 1.02
TPM3-220ENST00000509601 APBA2Q99767 749 aa21.4■■□□□ 1.02
TPM3-220ENST00000509601 CWC22Q9HCG8 908 aaKnown RBP21.4■■□□□ 1.02
TPM3-220ENST00000509601 SUPT16HQ9Y5B9 1047 aaKnown RBP21.4■■□□□ 1.02
TPM3-220ENST00000509601 ERCC3P19447 782 aa21.39■■□□□ 1.01
TPM3-220ENST00000509601 MNX1P50219 401 aaPredicted RBP21.39■■□□□ 1.01
TPM3-220ENST00000509601 TMEM132BQ14DG7 1078 aa21.39■■□□□ 1.01
TPM3-220ENST00000509601 VPS53Q5VIR6 699 aa21.39■■□□□ 1.01
TPM3-220ENST00000509601 DPF3Q92784 378 aa21.39■■□□□ 1.01
TPM3-220ENST00000509601 NAPBQ9H115 298 aa21.39■■□□□ 1.01
TPM3-220ENST00000509601 GOPCQ9HD26 462 aa21.39■■□□□ 1.01
TPM3-220ENST00000509601 CLIP2Q9UDT6 1046 aa21.39■■□□□ 1.01
TPM3-220ENST00000509601 F5H6K3 240 aa21.38■■□□□ 1.01
TPM3-220ENST00000509601 H0YGN5 161 aa21.38■■□□□ 1.01
TPM3-220ENST00000509601 STRNO43815 780 aa21.38■■□□□ 1.01
TPM3-220ENST00000509601 CCND3P30281 292 aaPredicted RBP21.38■■□□□ 1.01
TPM3-220ENST00000509601 NUCB1Q02818 461 aa21.38■■□□□ 1.01
TPM3-220ENST00000509601 KLRC3Q07444 240 aa21.38■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms