RNA–Protein interactions for RNA: ENST00000509454.5

LIMCH1-210, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,506 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-210ENST00000509454 MTMR4Q9NYA4 1195 aa13.49□□□□□ -0.25
LIMCH1-210ENST00000509454 MTMR7Q9Y216 660 aa13.49□□□□□ -0.25
LIMCH1-210ENST00000509454 ECM2O94769 699 aaPredicted RBP13.48□□□□□ -0.25
LIMCH1-210ENST00000509454 REC8O95072 547 aa13.48□□□□□ -0.25
LIMCH1-210ENST00000509454 CYP21A2P08686 494 aa13.48□□□□□ -0.25
LIMCH1-210ENST00000509454 RNF20Q5VTR2 975 aa13.48□□□□□ -0.25
LIMCH1-210ENST00000509454 RALYLQ86SE5 291 aaKnown RBP13.48□□□□□ -0.25
LIMCH1-210ENST00000509454 ZKSCAN3Q9BRR0 538 aa13.48□□□□□ -0.25
LIMCH1-210ENST00000509454 R3HDMLQ9H3Y0 253 aa13.48□□□□□ -0.25
LIMCH1-210ENST00000509454 RPAP3Q9H6T3 665 aaPredicted RBP13.48□□□□□ -0.25
LIMCH1-210ENST00000509454 NYAP2Q9P242 653 aa13.48□□□□□ -0.25
LIMCH1-210ENST00000509454 TMX2Q9Y320 296 aa13.48□□□□□ -0.25
LIMCH1-210ENST00000509454 PLIN4Q96Q06 1357 aa13.47□□□□□ -0.25
LIMCH1-210ENST00000509454 LOC285556D6RIA3 1793 aa13.47□□□□□ -0.25
LIMCH1-210ENST00000509454 GPR25O00155 361 aa13.47□□□□□ -0.25
LIMCH1-210ENST00000509454 FGRP09769 529 aa13.47□□□□□ -0.25
LIMCH1-210ENST00000509454 VCAM1P19320 739 aa13.47□□□□□ -0.25
LIMCH1-210ENST00000509454 IQCA1Q86XH1 822 aa13.47□□□□□ -0.25
LIMCH1-210ENST00000509454 SIAH1Q8IUQ4 282 aa13.47□□□□□ -0.25
LIMCH1-210ENST00000509454 VCPKMTQ9H867 229 aa13.47□□□□□ -0.25
LIMCH1-210ENST00000509454 CPA4Q9UI42 421 aa13.47□□□□□ -0.25
LIMCH1-210ENST00000509454 SLC45A1Q9Y2W3 748 aa13.47□□□□□ -0.25
LIMCH1-210ENST00000509454 MYH4Q9Y623 1939 aa13.46□□□□□ -0.25
LIMCH1-210ENST00000509454 IGKV6D-41A0A0C4DH26 115 aa13.46□□□□□ -0.25
LIMCH1-210ENST00000509454 USP17L15C9J2P7 530 aa13.46□□□□□ -0.25
LIMCH1-210ENST00000509454 USP17L13C9JLJ4 530 aa13.46□□□□□ -0.25
LIMCH1-210ENST00000509454 USP17L11C9JVI0 530 aa13.46□□□□□ -0.25
LIMCH1-210ENST00000509454 USP17L18D6R9N7 530 aa13.46□□□□□ -0.25
LIMCH1-210ENST00000509454 USP17L22D6RA61 530 aa13.46□□□□□ -0.25
LIMCH1-210ENST00000509454 USP17L17D6RBQ6 530 aa13.46□□□□□ -0.25
LIMCH1-210ENST00000509454 USP17L19D6RCP7 530 aa13.46□□□□□ -0.25
LIMCH1-210ENST00000509454 USP17L20D6RJB6 530 aa13.46□□□□□ -0.25
LIMCH1-210ENST00000509454 SLC27A2O14975 620 aa13.46□□□□□ -0.25
LIMCH1-210ENST00000509454 USP17L24Q0WX57 530 aa13.46□□□□□ -0.25
LIMCH1-210ENST00000509454 CREB3L3Q68CJ9 461 aa13.46□□□□□ -0.25
LIMCH1-210ENST00000509454 LPAR1Q92633 364 aa13.46□□□□□ -0.25
LIMCH1-210ENST00000509454 C12orf42Q96LP6 360 aa13.46□□□□□ -0.25
LIMCH1-210ENST00000509454 UBAC1Q9BSL1 405 aa13.46□□□□□ -0.25
LIMCH1-210ENST00000509454 ASCC2Q9H1I8 757 aaPredicted RBP13.46□□□□□ -0.25
LIMCH1-210ENST00000509454 GREB1LQ9C091 1923 aaPredicted RBP13.46□□□□□ -0.26
LIMCH1-210ENST00000509454 E7EWF7 191 aa13.45□□□□□ -0.26
LIMCH1-210ENST00000509454 TLR2O60603 784 aa13.45□□□□□ -0.26
LIMCH1-210ENST00000509454 FKTNO75072 461 aa13.45□□□□□ -0.26
LIMCH1-210ENST00000509454 NCOA7Q8NI08 942 aa13.45□□□□□ -0.26
LIMCH1-210ENST00000509454 ZNF296Q8WUU4 475 aaPredicted RBP13.45□□□□□ -0.26
LIMCH1-210ENST00000509454 IL17RBQ9NRM6 502 aa13.45□□□□□ -0.26
LIMCH1-210ENST00000509454 TAF6LQ9Y6J9 622 aa13.45□□□□□ -0.26
LIMCH1-210ENST00000509454 FLOT1O75955 427 aa13.44□□□□□ -0.26
LIMCH1-210ENST00000509454 ZKSCAN1P17029 563 aaPredicted RBP13.44□□□□□ -0.26
LIMCH1-210ENST00000509454 KIF22Q14807 665 aa13.44□□□□□ -0.26
LIMCH1-210ENST00000509454 CCDC178Q5BJE1 867 aa13.44□□□□□ -0.26
LIMCH1-210ENST00000509454 KIAA1755Q5JYT7 1200 aa13.44□□□□□ -0.26
LIMCH1-210ENST00000509454 FAM83BQ5T0W9 1011 aa13.44□□□□□ -0.26
LIMCH1-210ENST00000509454 SLFN13Q68D06 897 aa13.44□□□□□ -0.26
LIMCH1-210ENST00000509454 NUP88Q99567 741 aaPredicted RBP13.44□□□□□ -0.26
LIMCH1-210ENST00000509454 P2RX7Q99572 595 aaKnown RBP13.44□□□□□ -0.26
LIMCH1-210ENST00000509454 CFHR5Q9BXR6 569 aa13.44□□□□□ -0.26
LIMCH1-210ENST00000509454 ZSWIM5Q9P217 1185 aa13.44□□□□□ -0.26
LIMCH1-210ENST00000509454 CASP8AP2Q9UKL3 1982 aa13.44□□□□□ -0.26
LIMCH1-210ENST00000509454 ERICH2A1L162 156 aa13.44□□□□□ -0.26
LIMCH1-210ENST00000509454 F5H6K3 240 aa13.44□□□□□ -0.26
LIMCH1-210ENST00000509454 WDR46O15213 610 aaKnown RBP13.44□□□□□ -0.26
LIMCH1-210ENST00000509454 NDUFB10O96000 172 aa13.44□□□□□ -0.26
LIMCH1-210ENST00000509454 HOXA7P31268 230 aaPredicted RBP13.44□□□□□ -0.26
LIMCH1-210ENST00000509454 NT5C2P49902 561 aa13.44□□□□□ -0.26
LIMCH1-210ENST00000509454 SP3Q02447 781 aa13.44□□□□□ -0.26
LIMCH1-210ENST00000509454 KLRC3Q07444 240 aa13.44□□□□□ -0.26
LIMCH1-210ENST00000509454 IKQ13123 557 aaPredicted RBP13.44□□□□□ -0.26
LIMCH1-210ENST00000509454 NECTIN1Q15223 517 aa13.44□□□□□ -0.26
LIMCH1-210ENST00000509454 CCDC96Q2M329 555 aa13.44□□□□□ -0.26
LIMCH1-210ENST00000509454 CATSPERGQ6ZRH7 1159 aa13.44□□□□□ -0.26
LIMCH1-210ENST00000509454 STOX1Q6ZVD7 989 aa13.44□□□□□ -0.26
LIMCH1-210ENST00000509454 ANKRD13CQ8N6S4 541 aa13.44□□□□□ -0.26
LIMCH1-210ENST00000509454 NKX2-3Q8TAU0 364 aa13.44□□□□□ -0.26
LIMCH1-210ENST00000509454 ZSCAN10Q96SZ4 725 aaPredicted RBP13.44□□□□□ -0.26
LIMCH1-210ENST00000509454 PAGR1Q9BTK6 254 aa13.44□□□□□ -0.26
LIMCH1-210ENST00000509454 TCP11L1Q9NUJ3 509 aa13.44□□□□□ -0.26
LIMCH1-210ENST00000509454 TNKSO95271 1327 aa13.43□□□□□ -0.26
LIMCH1-210ENST00000509454 TOP1P11387 765 aaKnown RBP13.43□□□□□ -0.26
LIMCH1-210ENST00000509454 MCCP23508 829 aa13.43□□□□□ -0.26
LIMCH1-210ENST00000509454 SLC1A4P43007 532 aa13.43□□□□□ -0.26
LIMCH1-210ENST00000509454 GCLCP48506 637 aaPredicted RBP13.43□□□□□ -0.26
LIMCH1-210ENST00000509454 HERVK_113P62684 666 aa13.43□□□□□ -0.26
LIMCH1-210ENST00000509454 SART3Q15020 963 aaKnown RBP13.43□□□□□ -0.26
LIMCH1-210ENST00000509454 CYB5R4Q7L1T6 521 aa13.43□□□□□ -0.26
LIMCH1-210ENST00000509454 CHST3Q7LGC8 479 aa13.43□□□□□ -0.26
LIMCH1-210ENST00000509454 CD99L2Q8TCZ2 262 aa13.43□□□□□ -0.26
LIMCH1-210ENST00000509454 MKL1Q969V6 931 aa13.43□□□□□ -0.26
LIMCH1-210ENST00000509454 ERO1AQ96HE7 468 aa13.43□□□□□ -0.26
LIMCH1-210ENST00000509454 TMEM47Q9BQJ4 181 aa13.43□□□□□ -0.26
LIMCH1-210ENST00000509454 KAT14Q9H8E8 782 aa13.43□□□□□ -0.26
LIMCH1-210ENST00000509454 PRDM10Q9NQV6 1147 aa13.43□□□□□ -0.26
LIMCH1-210ENST00000509454 CTDP1Q9Y5B0 961 aaPredicted RBP13.43□□□□□ -0.26
LIMCH1-210ENST00000509454 IFIT3O14879 490 aaKnown RBP13.42□□□□□ -0.26
LIMCH1-210ENST00000509454 COG2Q14746 738 aa13.42□□□□□ -0.26
LIMCH1-210ENST00000509454 CCAR1Q8IX12 1150 aaKnown RBP13.42□□□□□ -0.26
LIMCH1-210ENST00000509454 GMCL1P1Q8NEA9 526 aa13.42□□□□□ -0.26
LIMCH1-210ENST00000509454 CWC22Q9HCG8 908 aaKnown RBP13.42□□□□□ -0.26
LIMCH1-210ENST00000509454 ADGRA2Q96PE1 1338 aa13.41□□□□□ -0.26
LIMCH1-210ENST00000509454 IFIT1BQ5T764 474 aaKnown RBP13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms