RNA–Protein interactions for RNA: ENST00000508342.5

NEDD4-208, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,235 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-208ENST00000508342 TESK2Q96S53 571 aa3.37□□□□□ -1.87
NEDD4-208ENST00000508342 MFSD1Q9H3U5 465 aa3.37□□□□□ -1.87
NEDD4-208ENST00000508342 CLIP2Q9UDT6 1046 aa3.37□□□□□ -1.87
NEDD4-208ENST00000508342 ZNF215Q9UL58 517 aaPredicted RBP3.37□□□□□ -1.87
NEDD4-208ENST00000508342 PAPPAQ13219 1627 aa3.37□□□□□ -1.87
NEDD4-208ENST00000508342 RTL9Q8NET4 1388 aa3.37□□□□□ -1.87
NEDD4-208ENST00000508342 EPB41L2O43491 1005 aaKnown RBP3.37□□□□□ -1.87
NEDD4-208ENST00000508342 CDKL5O76039 1030 aa3.37□□□□□ -1.87
NEDD4-208ENST00000508342 ZSCAN20P17040 1043 aaPredicted RBP3.37□□□□□ -1.87
NEDD4-208ENST00000508342 ARID4AP29374 1257 aaPredicted RBP3.37□□□□□ -1.87
NEDD4-208ENST00000508342 ARID5AQ03989 594 aa3.37□□□□□ -1.87
NEDD4-208ENST00000508342 ICA1Q05084 483 aa3.37□□□□□ -1.87
NEDD4-208ENST00000508342 PROSER3Q2NL68 480 aa3.37□□□□□ -1.87
NEDD4-208ENST00000508342 TSHZ1Q6ZSZ6 1077 aa3.37□□□□□ -1.87
NEDD4-208ENST00000508342 SPICE1Q8N0Z3 855 aa3.37□□□□□ -1.87
NEDD4-208ENST00000508342 TTC14Q96N46 770 aa3.37□□□□□ -1.87
NEDD4-208ENST00000508342 DHX36Q9H2U1 1008 aaKnown RBP3.37□□□□□ -1.87
NEDD4-208ENST00000508342 SEPT11Q9NVA2 429 aaKnown RBP3.37□□□□□ -1.87
NEDD4-208ENST00000508342 ZNHIT6Q9NWK9 470 aaKnown RBP3.37□□□□□ -1.87
NEDD4-208ENST00000508342 FAM50BQ9Y247 325 aa3.37□□□□□ -1.87
NEDD4-208ENST00000508342 EYA2O00167 538 aa3.37□□□□□ -1.87
NEDD4-208ENST00000508342 DNM2P50570 870 aa3.37□□□□□ -1.87
NEDD4-208ENST00000508342 MRPS9P82933 396 aaKnown RBP3.37□□□□□ -1.87
NEDD4-208ENST00000508342 RNASELQ05823 741 aaKnown RBP3.37□□□□□ -1.87
NEDD4-208ENST00000508342 LONRF3Q496Y0 759 aa3.37□□□□□ -1.87
NEDD4-208ENST00000508342 ANO1Q5XXA6 986 aa3.37□□□□□ -1.87
NEDD4-208ENST00000508342 WASF1Q92558 559 aa3.37□□□□□ -1.87
NEDD4-208ENST00000508342 CELF1Q92879 486 aaKnown RBP3.37□□□□□ -1.87
NEDD4-208ENST00000508342 CD209Q9NNX6 404 aa3.37□□□□□ -1.87
NEDD4-208ENST00000508342 PCDHB7Q9Y5E2 793 aa3.37□□□□□ -1.87
NEDD4-208ENST00000508342 LY75O60449 1722 aa3.37□□□□□ -1.87
NEDD4-208ENST00000508342 PSMC4P43686 418 aa3.37□□□□□ -1.87
NEDD4-208ENST00000508342 STAT2P52630 851 aa3.37□□□□□ -1.87
NEDD4-208ENST00000508342 HDAC1Q13547 482 aaPredicted RBP3.37□□□□□ -1.87
NEDD4-208ENST00000508342 ODR4Q5SWX8 454 aa3.37□□□□□ -1.87
NEDD4-208ENST00000508342 NSMFQ6X4W1 530 aa3.37□□□□□ -1.87
NEDD4-208ENST00000508342 NLRX1Q86UT6 975 aa3.37□□□□□ -1.87
NEDD4-208ENST00000508342 JMYQ8N9B5 988 aa3.37□□□□□ -1.87
NEDD4-208ENST00000508342 SH3RF3Q8TEJ3 882 aaPredicted RBP3.37□□□□□ -1.87
NEDD4-208ENST00000508342 WNK4Q96J92 1243 aa3.37□□□□□ -1.87
NEDD4-208ENST00000508342 SPATA32Q96LK8 384 aa3.37□□□□□ -1.87
NEDD4-208ENST00000508342 SENP7Q9BQF6 1050 aa3.37□□□□□ -1.87
NEDD4-208ENST00000508342 LNPKQ9C0E8 428 aa3.37□□□□□ -1.87
NEDD4-208ENST00000508342 CNNM2Q9H8M5 875 aa3.37□□□□□ -1.87
NEDD4-208ENST00000508342 PALD1Q9ULE6 856 aa3.37□□□□□ -1.87
NEDD4-208ENST00000508342 GINS2Q9Y248 185 aa3.37□□□□□ -1.87
NEDD4-208ENST00000508342 USP17L10C9JJH3 530 aa3.37□□□□□ -1.87
NEDD4-208ENST00000508342 PTGER2P43116 358 aa3.37□□□□□ -1.87
NEDD4-208ENST00000508342 FKBP1BP68106 108 aa3.37□□□□□ -1.87
NEDD4-208ENST00000508342 SASS6Q6UVJ0 657 aa3.37□□□□□ -1.87
NEDD4-208ENST00000508342 TMEM199Q8N511 208 aa3.37□□□□□ -1.87
NEDD4-208ENST00000508342 ZNF280CQ8ND82 737 aa3.37□□□□□ -1.87
NEDD4-208ENST00000508342 URGCPQ8TCY9 931 aa3.37□□□□□ -1.87
NEDD4-208ENST00000508342 ESR2Q92731 530 aa3.37□□□□□ -1.87
NEDD4-208ENST00000508342 ZKSCAN4Q969J2 545 aaPredicted RBP3.37□□□□□ -1.87
NEDD4-208ENST00000508342 EVI5LQ96CN4 794 aa3.37□□□□□ -1.87
NEDD4-208ENST00000508342 FERMT1Q9BQL6 677 aa3.37□□□□□ -1.87
NEDD4-208ENST00000508342 MCOLN1Q9GZU1 580 aa3.37□□□□□ -1.87
NEDD4-208ENST00000508342 C11orf49Q9H6J7 331 aa3.37□□□□□ -1.87
NEDD4-208ENST00000508342 YY1AP1Q9H869 796 aa3.37□□□□□ -1.87
NEDD4-208ENST00000508342 CPSF2Q9P2I0 782 aaKnown RBP3.37□□□□□ -1.87
NEDD4-208ENST00000508342 ARPP21Q9UBL0 812 aaPredicted RBP3.37□□□□□ -1.87
NEDD4-208ENST00000508342 TRPM7Q96QT4 1865 aa3.36□□□□□ -1.87
NEDD4-208ENST00000508342 ADCY3O60266 1144 aa3.36□□□□□ -1.87
NEDD4-208ENST00000508342 PQBP1O60828 265 aaKnown RBP3.36□□□□□ -1.87
NEDD4-208ENST00000508342 ERLIN2O94905 339 aa3.36□□□□□ -1.87
NEDD4-208ENST00000508342 SMC2O95347 1197 aa3.36□□□□□ -1.87
NEDD4-208ENST00000508342 SLC1A4P43007 532 aa3.36□□□□□ -1.87
NEDD4-208ENST00000508342 HAND2P61296 217 aa3.36□□□□□ -1.87
NEDD4-208ENST00000508342 MECOMQ03112 1051 aa3.36□□□□□ -1.87
NEDD4-208ENST00000508342 GNPTABQ3T906 1256 aa3.36□□□□□ -1.87
NEDD4-208ENST00000508342 FAM160B1Q5W0V3 765 aa3.36□□□□□ -1.87
NEDD4-208ENST00000508342 KLHL10Q6JEL2 608 aa3.36□□□□□ -1.87
NEDD4-208ENST00000508342 EEPD1Q7L9B9 569 aa3.36□□□□□ -1.87
NEDD4-208ENST00000508342 PLEKHH3Q7Z736 793 aa3.36□□□□□ -1.87
NEDD4-208ENST00000508342 SOCS4Q8WXH5 440 aa3.36□□□□□ -1.87
NEDD4-208ENST00000508342 RAB34Q9BZG1 259 aa3.36□□□□□ -1.87
NEDD4-208ENST00000508342 PIDD1Q9HB75 910 aa3.36□□□□□ -1.87
NEDD4-208ENST00000508342 LOC102724159A0A0B4J2E5 919 aa3.36□□□□□ -1.87
NEDD4-208ENST00000508342 POTEB2H3BUK9 544 aa3.36□□□□□ -1.87
NEDD4-208ENST00000508342 ZFYP08048 801 aaPredicted RBP3.36□□□□□ -1.87
NEDD4-208ENST00000508342 CPT1AP50416 773 aa3.36□□□□□ -1.87
NEDD4-208ENST00000508342 NAPAP54920 295 aa3.36□□□□□ -1.87
NEDD4-208ENST00000508342 PWP2Q15269 919 aaKnown RBP3.36□□□□□ -1.87
NEDD4-208ENST00000508342 TMEM266Q2M3C6 531 aa3.36□□□□□ -1.87
NEDD4-208ENST00000508342 RPUSD2Q8IZ73 545 aaKnown RBP3.36□□□□□ -1.87
NEDD4-208ENST00000508342 LRRC47Q8N1G4 583 aaKnown RBP3.36□□□□□ -1.87
NEDD4-208ENST00000508342 LRRC45Q96CN5 670 aa3.36□□□□□ -1.87
NEDD4-208ENST00000508342 TRERF1Q96PN7 1200 aa3.36□□□□□ -1.87
NEDD4-208ENST00000508342 TMEM39BQ9GZU3 492 aa3.36□□□□□ -1.87
NEDD4-208ENST00000508342 FEM1BQ9UK73 627 aa3.36□□□□□ -1.87
NEDD4-208ENST00000508342 UBR3Q6ZT12 1888 aa3.36□□□□□ -1.87
NEDD4-208ENST00000508342 EIF4E1BA6NMX2 242 aaKnown RBP3.36□□□□□ -1.87
NEDD4-208ENST00000508342 NBPF26B4DH59 902 aa3.36□□□□□ -1.87
NEDD4-208ENST00000508342 MAPK4P31152 587 aa3.36□□□□□ -1.87
NEDD4-208ENST00000508342 DDR1Q08345 913 aa3.36□□□□□ -1.87
NEDD4-208ENST00000508342 WTAPQ15007 396 aa3.36□□□□□ -1.87
NEDD4-208ENST00000508342 CCDC85BQ15834 202 aaPredicted RBP3.36□□□□□ -1.87
NEDD4-208ENST00000508342 SLAIN1Q8ND83 568 aa3.36□□□□□ -1.87
NEDD4-208ENST00000508342 ALG1Q9BT22 464 aa3.36□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms