RNA–Protein interactions for RNA: ENST00000506941.1

NPHP4-210, Transcript of nephrocystin 4, humanhuman

TSL 4

Gene NPHP4, Length 570 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-210ENST00000506941 PABPC4Q13310 644 aaKnown RBP eCLIP21.51■■□□□ 1.03
NPHP4-210ENST00000506941 COL13A1Q5TAT6 717 aaPredicted RBP21.51■■□□□ 1.03
NPHP4-210ENST00000506941 CASC1Q6TDU7 716 aa21.51■■□□□ 1.03
NPHP4-210ENST00000506941 C17orf99Q6UX52 265 aa21.51■■□□□ 1.03
NPHP4-210ENST00000506941 SH2D4AQ9H788 454 aa21.51■■□□□ 1.03
NPHP4-210ENST00000506941 ANO2Q9NQ90 1003 aa21.51■■□□□ 1.03
NPHP4-210ENST00000506941 CLIP2Q9UDT6 1046 aa21.51■■□□□ 1.03
NPHP4-210ENST00000506941 KIAA1211Q6ZU35 1233 aa21.5■■□□□ 1.03
NPHP4-210ENST00000506941 SPICE1Q8N0Z3 855 aa21.5■■□□□ 1.03
NPHP4-210ENST00000506941 RPAP3Q9H6T3 665 aaPredicted RBP21.5■■□□□ 1.03
NPHP4-210ENST00000506941 PNMA3Q9UL41 463 aa21.5■■□□□ 1.03
NPHP4-210ENST00000506941 TTLL1O95922 423 aa21.49■■□□□ 1.03
NPHP4-210ENST00000506941 BCRP11274 1271 aa21.49■■□□□ 1.03
NPHP4-210ENST00000506941 OSBPP22059 807 aa21.49■■□□□ 1.03
NPHP4-210ENST00000506941 SMCR8Q8TEV9 937 aaPredicted RBP21.49■■□□□ 1.03
NPHP4-210ENST00000506941 MKL1Q969V6 931 aa21.49■■□□□ 1.03
NPHP4-210ENST00000506941 B4E1Z4 1266 aa21.48■■□□□ 1.03
NPHP4-210ENST00000506941 USP17L15C9J2P7 530 aa21.48■■□□□ 1.03
NPHP4-210ENST00000506941 USP17L13C9JLJ4 530 aa21.48■■□□□ 1.03
NPHP4-210ENST00000506941 USP17L11C9JVI0 530 aa21.48■■□□□ 1.03
NPHP4-210ENST00000506941 USP17L18D6R9N7 530 aa21.48■■□□□ 1.03
NPHP4-210ENST00000506941 USP17L22D6RA61 530 aa21.48■■□□□ 1.03
NPHP4-210ENST00000506941 USP17L17D6RBQ6 530 aa21.48■■□□□ 1.03
NPHP4-210ENST00000506941 USP17L19D6RCP7 530 aa21.48■■□□□ 1.03
NPHP4-210ENST00000506941 USP17L20D6RJB6 530 aa21.48■■□□□ 1.03
NPHP4-210ENST00000506941 NOVP48745 357 aa21.48■■□□□ 1.03
NPHP4-210ENST00000506941 IRX3P78415 501 aaPredicted RBP21.48■■□□□ 1.03
NPHP4-210ENST00000506941 SP3Q02447 781 aa21.48■■□□□ 1.03
NPHP4-210ENST00000506941 USP17L24Q0WX57 530 aa21.48■■□□□ 1.03
NPHP4-210ENST00000506941 POTEEQ6S8J3 1075 aa21.48■■□□□ 1.03
NPHP4-210ENST00000506941 CATSPERGQ6ZRH7 1159 aa21.48■■□□□ 1.03
NPHP4-210ENST00000506941 LRRC47Q8N1G4 583 aaKnown RBP21.48■■□□□ 1.03
NPHP4-210ENST00000506941 LPAR1Q92633 364 aa21.48■■□□□ 1.03
NPHP4-210ENST00000506941 P2RX7Q99572 595 aaKnown RBP21.48■■□□□ 1.03
NPHP4-210ENST00000506941 GOPCQ9HD26 462 aa21.48■■□□□ 1.03
NPHP4-210ENST00000506941 KDM4AO75164 1064 aa21.47■■□□□ 1.03
NPHP4-210ENST00000506941 HERVK_113P62684 666 aa21.47■■□□□ 1.03
NPHP4-210ENST00000506941 STOX1Q6ZVD7 989 aa21.47■■□□□ 1.03
NPHP4-210ENST00000506941 CD99L2Q8TCZ2 262 aa21.47■■□□□ 1.03
NPHP4-210ENST00000506941 ESR2Q92731 530 aa21.47■■□□□ 1.03
NPHP4-210ENST00000506941 TCP11L1Q9NUJ3 509 aa21.47■■□□□ 1.03
NPHP4-210ENST00000506941 PLXNB2O15031 1838 aa21.47■■□□□ 1.03
NPHP4-210ENST00000506941 CENPFP49454 3210 aa21.46■■□□□ 1.03
NPHP4-210ENST00000506941 WDR46O15213 610 aaKnown RBP21.46■■□□□ 1.03
NPHP4-210ENST00000506941 PEX10O60683 326 aa21.46■■□□□ 1.03
NPHP4-210ENST00000506941 TANGO6Q9C0B7 1094 aa21.46■■□□□ 1.03
NPHP4-210ENST00000506941 STX8Q9UNK0 236 aa21.46■■□□□ 1.03
NPHP4-210ENST00000506941 E7EWF7 191 aa21.45■■□□□ 1.02
NPHP4-210ENST00000506941 F5H6K3 240 aa21.45■■□□□ 1.02
NPHP4-210ENST00000506941 RAD21O60216 631 aa21.45■■□□□ 1.02
NPHP4-210ENST00000506941 NDUFB10O96000 172 aa21.45■■□□□ 1.02
NPHP4-210ENST00000506941 CTGFP29279 349 aa21.45■■□□□ 1.02
NPHP4-210ENST00000506941 KLRC3Q07444 240 aa21.45■■□□□ 1.02
NPHP4-210ENST00000506941 NECTIN1Q15223 517 aa21.45■■□□□ 1.02
NPHP4-210ENST00000506941 RCSD1Q6JBY9 416 aa21.45■■□□□ 1.02
NPHP4-210ENST00000506941 ANKRD13CQ8N6S4 541 aa21.45■■□□□ 1.02
NPHP4-210ENST00000506941 NUP88Q99567 741 aaPredicted RBP21.45■■□□□ 1.02
NPHP4-210ENST00000506941 ZKSCAN3Q9BRR0 538 aa21.45■■□□□ 1.02
NPHP4-210ENST00000506941 KRT23Q9C075 422 aa21.45■■□□□ 1.02
NPHP4-210ENST00000506941 ARHGAP39Q9C0H5 1083 aa21.45■■□□□ 1.02
NPHP4-210ENST00000506941 CNNM2Q9H8M5 875 aa21.45■■□□□ 1.02
NPHP4-210ENST00000506941 ZSWIM5Q9P217 1185 aa21.45■■□□□ 1.02
NPHP4-210ENST00000506941 SYNPO2Q9UMS6 1093 aa21.45■■□□□ 1.02
NPHP4-210ENST00000506941 SLC27A2O14975 620 aa21.44■■□□□ 1.02
NPHP4-210ENST00000506941 GCLCP48506 637 aaPredicted RBP21.44■■□□□ 1.02
NPHP4-210ENST00000506941 LACTBP83111 547 aaPredicted RBP21.44■■□□□ 1.02
NPHP4-210ENST00000506941 FAM83BQ5T0W9 1011 aa21.44■■□□□ 1.02
NPHP4-210ENST00000506941 CREB3L3Q68CJ9 461 aa21.44■■□□□ 1.02
NPHP4-210ENST00000506941 GMCL1P1Q8NEA9 526 aa21.44■■□□□ 1.02
NPHP4-210ENST00000506941 TXNRD2Q9NNW7 524 aa21.44■■□□□ 1.02
NPHP4-210ENST00000506941 SPDYE16A6NNV3 312 aaPredicted RBP21.43■■□□□ 1.02
NPHP4-210ENST00000506941 NT5C2P49902 561 aa21.43■■□□□ 1.02
NPHP4-210ENST00000506941 FAM110CQ1W6H9 321 aa21.43■■□□□ 1.02
NPHP4-210ENST00000506941 PPP4R3BQ5MIZ7 849 aa21.43■■□□□ 1.02
NPHP4-210ENST00000506941 CYB5R4Q7L1T6 521 aa21.43■■□□□ 1.02
NPHP4-210ENST00000506941 RASGRP2Q7LDG7 609 aa21.43■■□□□ 1.02
NPHP4-210ENST00000506941 ERO1AQ96HE7 468 aa21.43■■□□□ 1.02
NPHP4-210ENST00000506941 RBPJLQ9UBG7 517 aa21.43■■□□□ 1.02
NPHP4-210ENST00000506941 ZNFX1Q9P2E3 1918 aaKnown RBP21.43■■□□□ 1.02
NPHP4-210ENST00000506941 CNMDO75829 334 aa21.42■■□□□ 1.02
NPHP4-210ENST00000506941 ECM2O94769 699 aaPredicted RBP21.42■■□□□ 1.02
NPHP4-210ENST00000506941 LBX2Q6XYB7 198 aa21.42■■□□□ 1.02
NPHP4-210ENST00000506941 CTU1Q7Z7A3 348 aaKnown RBP21.42■■□□□ 1.02
NPHP4-210ENST00000506941 TMEM47Q9BQJ4 181 aa21.42■■□□□ 1.02
NPHP4-210ENST00000506941 FBXO28Q9NVF7 368 aa21.42■■□□□ 1.02
NPHP4-210ENST00000506941 MORF4L1Q9UBU8 362 aa21.42■■□□□ 1.02
NPHP4-210ENST00000506941 MYH6P13533 1939 aa21.41■■□□□ 1.02
NPHP4-210ENST00000506941 FLOT1O75955 427 aa21.41■■□□□ 1.02
NPHP4-210ENST00000506941 COL9A3Q14050 684 aaPredicted RBP21.41■■□□□ 1.02
NPHP4-210ENST00000506941 COG2Q14746 738 aa21.41■■□□□ 1.02
NPHP4-210ENST00000506941 SLFN13Q68D06 897 aa21.41■■□□□ 1.02
NPHP4-210ENST00000506941 OTOP1Q7RTM1 612 aa21.41■■□□□ 1.02
NPHP4-210ENST00000506941 CHMP4CQ96CF2 233 aa21.41■■□□□ 1.02
NPHP4-210ENST00000506941 ZSCAN10Q96SZ4 725 aaPredicted RBP21.41■■□□□ 1.02
NPHP4-210ENST00000506941 SMCHD1A6NHR9 2005 aa21.41■■□□□ 1.02
NPHP4-210ENST00000506941 TOP1P11387 765 aaKnown RBP21.4■■□□□ 1.02
NPHP4-210ENST00000506941 IQCA1Q86XH1 822 aa21.4■■□□□ 1.02
NPHP4-210ENST00000506941 MB21D2Q8IYB1 491 aaPredicted RBP21.4■■□□□ 1.02
NPHP4-210ENST00000506941 ENAHQ8N8S7 591 aaPredicted RBP21.4■■□□□ 1.02
NPHP4-210ENST00000506941 TRIM47Q96LD4 638 aa21.4■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms