RNA–Protein interactions for RNA: ENST00000503215.5

SCLT1-204, Transcript of sodium channel and clathrin linker 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCLT1, Length 1,364 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCLT1-204ENST00000503215 CCDC17Q96LX7 622 aa19.52■□□□□ 0.72
SCLT1-204ENST00000503215 SEC62Q99442 399 aaKnown RBP19.52■□□□□ 0.72
SCLT1-204ENST00000503215 TANGO6Q9C0B7 1094 aa19.52■□□□□ 0.72
SCLT1-204ENST00000503215 EPB41L4AQ9HCS5 686 aaPredicted RBP19.52■□□□□ 0.72
SCLT1-204ENST00000503215 HMX1Q9NP08 348 aaPredicted RBP19.52■□□□□ 0.72
SCLT1-204ENST00000503215 COLQQ9Y215 455 aaPredicted RBP19.52■□□□□ 0.72
SCLT1-204ENST00000503215 TMX2Q9Y320 296 aa19.52■□□□□ 0.72
SCLT1-204ENST00000503215 RPTORQ8N122 1335 aa19.51■□□□□ 0.71
SCLT1-204ENST00000503215 GPAA1O43292 621 aa19.51■□□□□ 0.71
SCLT1-204ENST00000503215 EEF2P13639 858 aaKnown RBP19.51■□□□□ 0.71
SCLT1-204ENST00000503215 MNX1P50219 401 aaPredicted RBP19.51■□□□□ 0.71
SCLT1-204ENST00000503215 CACNB2Q08289 660 aaPredicted RBP19.51■□□□□ 0.71
SCLT1-204ENST00000503215 COG2Q14746 738 aa19.51■□□□□ 0.71
SCLT1-204ENST00000503215 DDRGK1Q96HY6 314 aa19.51■□□□□ 0.71
SCLT1-204ENST00000503215 PAWRQ96IZ0 340 aaKnown RBP19.51■□□□□ 0.71
SCLT1-204ENST00000503215 FLRT1Q9NZU1 646 aa19.51■□□□□ 0.71
SCLT1-204ENST00000503215 MINDY4BA8MYZ0 360 aa19.5■□□□□ 0.71
SCLT1-204ENST00000503215 RGS2P41220 211 aa19.5■□□□□ 0.71
SCLT1-204ENST00000503215 ATP2B2Q01814 1243 aa19.5■□□□□ 0.71
SCLT1-204ENST00000503215 MAP2K5Q13163 448 aa19.5■□□□□ 0.71
SCLT1-204ENST00000503215 SBK1Q52WX2 424 aa19.5■□□□□ 0.71
SCLT1-204ENST00000503215 AMOTL1Q8IY63 956 aa19.5■□□□□ 0.71
SCLT1-204ENST00000503215 VCPKMTQ9H867 229 aa19.5■□□□□ 0.71
SCLT1-204ENST00000503215 TTC41PQ6P2S7 1318 aa19.5■□□□□ 0.71
SCLT1-204ENST00000503215 ZKSCAN1P17029 563 aaPredicted RBP19.49■□□□□ 0.71
SCLT1-204ENST00000503215 RASA1P20936 1047 aa19.49■□□□□ 0.71
SCLT1-204ENST00000503215 PTPREP23469 700 aa19.49■□□□□ 0.71
SCLT1-204ENST00000503215 CCND3P30281 292 aaPredicted RBP19.49■□□□□ 0.71
SCLT1-204ENST00000503215 CCNA1P78396 465 aa19.49■□□□□ 0.71
SCLT1-204ENST00000503215 SAMD1Q6SPF0 538 aaPredicted RBP19.49■□□□□ 0.71
SCLT1-204ENST00000503215 GCC1Q96CN9 775 aa19.49■□□□□ 0.71
SCLT1-204ENST00000503215 MOV10L1Q9BXT6 1211 aaKnown RBP19.49■□□□□ 0.71
SCLT1-204ENST00000503215 ARHGEF10LQ9HCE6 1279 aa19.49■□□□□ 0.71
SCLT1-204ENST00000503215 CWC22Q9HCG8 908 aaKnown RBP19.49■□□□□ 0.71
SCLT1-204ENST00000503215 HOXC10Q9NYD6 342 aa19.49■□□□□ 0.71
SCLT1-204ENST00000503215 ARPP21Q9UBL0 812 aaPredicted RBP19.49■□□□□ 0.71
SCLT1-204ENST00000503215 RLFQ13129 1914 aa19.49■□□□□ 0.71
SCLT1-204ENST00000503215 SALL3Q9BXA9 1300 aa19.49■□□□□ 0.71
SCLT1-204ENST00000503215 DSG3P32926 999 aa19.48■□□□□ 0.71
SCLT1-204ENST00000503215 ANKRD45Q5TZF3 282 aa19.48■□□□□ 0.71
SCLT1-204ENST00000503215 NPLOC4Q8TAT6 608 aa19.48■□□□□ 0.71
SCLT1-204ENST00000503215 ATG4CQ96DT6 458 aa19.48■□□□□ 0.71
SCLT1-204ENST00000503215 APBA2Q99767 749 aa19.48■□□□□ 0.71
SCLT1-204ENST00000503215 FBXO28Q9NVF7 368 aa19.48■□□□□ 0.71
SCLT1-204ENST00000503215 SLC15A5A6NIM6 579 aa19.47■□□□□ 0.71
SCLT1-204ENST00000503215 FLOT1O75955 427 aa19.47■□□□□ 0.71
SCLT1-204ENST00000503215 GLRX3O76003 335 aaKnown RBP19.47■□□□□ 0.71
SCLT1-204ENST00000503215 ZFYP08048 801 aaPredicted RBP19.47■□□□□ 0.71
SCLT1-204ENST00000503215 MX1P20591 662 aa19.47■□□□□ 0.71
SCLT1-204ENST00000503215 GIMAP6Q6P9H5 292 aa19.47■□□□□ 0.71
SCLT1-204ENST00000503215 LPAR1Q92633 364 aa19.47■□□□□ 0.71
SCLT1-204ENST00000503215 HTATIP2Q9BUP3 242 aa19.47■□□□□ 0.71
SCLT1-204ENST00000503215 KANSL2Q9H9L4 492 aa19.47■□□□□ 0.71
SCLT1-204ENST00000503215 MYH8P13535 1937 aa19.47■□□□□ 0.71
SCLT1-204ENST00000503215 TRIOBPQ9H2D6 2365 aa19.46■□□□□ 0.71
SCLT1-204ENST00000503215 ERC2O15083 957 aa19.46■□□□□ 0.71
SCLT1-204ENST00000503215 APPP05067 770 aa19.46■□□□□ 0.71
SCLT1-204ENST00000503215 GRB14Q14449 540 aa19.46■□□□□ 0.71
SCLT1-204ENST00000503215 FSD1Q9BTV5 496 aa19.46■□□□□ 0.71
SCLT1-204ENST00000503215 SPATC1LQ9H0A9 340 aa19.46■□□□□ 0.71
SCLT1-204ENST00000503215 PRDM1O75626 825 aa19.45■□□□□ 0.7
SCLT1-204ENST00000503215 ERCC3P19447 782 aa19.45■□□□□ 0.7
SCLT1-204ENST00000503215 ZMYM1Q5SVZ6 1142 aa19.45■□□□□ 0.7
SCLT1-204ENST00000503215 LHX8Q68G74 356 aa19.45■□□□□ 0.7
SCLT1-204ENST00000503215 CHRDL2Q6WN34 429 aa19.45■□□□□ 0.7
SCLT1-204ENST00000503215 TRMT44Q8IYL2 757 aaKnown RBP19.45■□□□□ 0.7
SCLT1-204ENST00000503215 IFNL3Q8IZI9 196 aa19.45■□□□□ 0.7
SCLT1-204ENST00000503215 NUP88Q99567 741 aaPredicted RBP19.45■□□□□ 0.7
SCLT1-204ENST00000503215 OGDHLQ9ULD0 1010 aa19.45■□□□□ 0.7
SCLT1-204ENST00000503215 PATL2C9JE40 543 aaKnown RBP19.44■□□□□ 0.7
SCLT1-204ENST00000503215 WDR46O15213 610 aaKnown RBP19.44■□□□□ 0.7
SCLT1-204ENST00000503215 RAD21O60216 631 aa19.44■□□□□ 0.7
SCLT1-204ENST00000503215 TDO2P48775 406 aa19.44■□□□□ 0.7
SCLT1-204ENST00000503215 PLS1Q14651 629 aa19.44■□□□□ 0.7
SCLT1-204ENST00000503215 TMEM132BQ14DG7 1078 aa19.44■□□□□ 0.7
SCLT1-204ENST00000503215 CCDC129Q6ZRS4 1044 aa19.44■□□□□ 0.7
SCLT1-204ENST00000503215 NECAB2Q7Z6G3 386 aa19.44■□□□□ 0.7
SCLT1-204ENST00000503215 SH2D4AQ9H788 454 aa19.44■□□□□ 0.7
SCLT1-204ENST00000503215 MKNK2Q9HBH9 465 aa19.44■□□□□ 0.7
SCLT1-204ENST00000503215 IVNS1ABPQ9Y6Y0 642 aa19.44■□□□□ 0.7
SCLT1-204ENST00000503215 FOXP2O15409 715 aa19.44■□□□□ 0.7
SCLT1-204ENST00000503215 COBLO75128 1261 aa19.44■□□□□ 0.7
SCLT1-204ENST00000503215 IGHA2P01877 340 aa19.44■□□□□ 0.7
SCLT1-204ENST00000503215 HOXC6P09630 235 aa19.44■□□□□ 0.7
SCLT1-204ENST00000503215 CYP2C19P33261 490 aa19.44■□□□□ 0.7
SCLT1-204ENST00000503215 HDAC1Q13547 482 aaPredicted RBP19.44■□□□□ 0.7
SCLT1-204ENST00000503215 FAM83BQ5T0W9 1011 aa19.44■□□□□ 0.7
SCLT1-204ENST00000503215 TRPV1Q8NER1 839 aa19.44■□□□□ 0.7
SCLT1-204ENST00000503215 PCDH10Q9P2E7 1040 aa19.44■□□□□ 0.7
SCLT1-204ENST00000503215 ADAMTS5Q9UNA0 930 aa19.44■□□□□ 0.7
SCLT1-204ENST00000503215 ROBO3Q96MS0 1386 aa19.43■□□□□ 0.7
SCLT1-204ENST00000503215 EVI5O60447 810 aa19.43■□□□□ 0.7
SCLT1-204ENST00000503215 GNAT2P19087 354 aa19.43■□□□□ 0.7
SCLT1-204ENST00000503215 ADORA2AP29274 412 aa19.43■□□□□ 0.7
SCLT1-204ENST00000503215 ANKLE1Q8NAG6 615 aa19.43■□□□□ 0.7
SCLT1-204ENST00000503215 RBM27Q9P2N5 1060 aaKnown RBP19.43■□□□□ 0.7
SCLT1-204ENST00000503215 RANBP2P49792 3224 aaKnown RBP19.43■□□□□ 0.7
SCLT1-204ENST00000503215 IGKV6D-41A0A0C4DH26 115 aa19.42■□□□□ 0.7
SCLT1-204ENST00000503215 CAPN2P17655 700 aa19.42■□□□□ 0.7
SCLT1-204ENST00000503215 FXR1P51114 621 aaKnown RBP eCLIP19.42■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms