RNA–Protein interactions for RNA: ENST00000498143.5

USP54-216, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 4,313 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-216ENST00000498143 CREB3O43889 395 aa5.86□□□□□ -1.47
USP54-216ENST00000498143 AKNAD1Q5T1N1 836 aa5.86□□□□□ -1.47
USP54-216ENST00000498143 COPS6Q7L5N1 327 aa5.86□□□□□ -1.47
USP54-216ENST00000498143 SCLT1Q96NL6 688 aa5.86□□□□□ -1.47
USP54-216ENST00000498143 SLTMQ9NWH9 1034 aaKnown RBP eCLIP5.86□□□□□ -1.47
USP54-216ENST00000498143 ZNF609O15014 1411 aa5.86□□□□□ -1.47
USP54-216ENST00000498143 CAPN9O14815 690 aa5.86□□□□□ -1.47
USP54-216ENST00000498143 UPP2O95045 317 aa5.86□□□□□ -1.47
USP54-216ENST00000498143 KCNA3P22001 575 aa5.86□□□□□ -1.47
USP54-216ENST00000498143 COPB2P35606 906 aa5.86□□□□□ -1.47
USP54-216ENST00000498143 TNFAIP2Q03169 654 aa5.86□□□□□ -1.47
USP54-216ENST00000498143 IFIT5Q13325 482 aaKnown RBP5.86□□□□□ -1.47
USP54-216ENST00000498143 PLEKHH3Q7Z736 793 aa5.86□□□□□ -1.47
USP54-216ENST00000498143 SPATA18Q8TC71 538 aa5.86□□□□□ -1.47
USP54-216ENST00000498143 GTF3C2Q8WUA4 911 aaPredicted RBP5.86□□□□□ -1.47
USP54-216ENST00000498143 UBA5Q9GZZ9 404 aa5.86□□□□□ -1.47
USP54-216ENST00000498143 LIMCH1Q9UPQ0 1083 aa5.86□□□□□ -1.47
USP54-216ENST00000498143 UBR1Q8IWV7 1749 aa5.85□□□□□ -1.47
USP54-216ENST00000498143 RAB11FIP3O75154 756 aa5.85□□□□□ -1.47
USP54-216ENST00000498143 TIGD5Q53EQ6 642 aa5.85□□□□□ -1.47
USP54-216ENST00000498143 SASS6Q6UVJ0 657 aa5.85□□□□□ -1.47
USP54-216ENST00000498143 MYOCDQ8IZQ8 938 aa5.85□□□□□ -1.47
USP54-216ENST00000498143 CMTR1Q8N1G2 835 aaKnown RBP5.85□□□□□ -1.47
USP54-216ENST00000498143 CHCHD4Q8N4Q1 142 aa5.85□□□□□ -1.47
USP54-216ENST00000498143 ZNF280CQ8ND82 737 aa5.85□□□□□ -1.47
USP54-216ENST00000498143 TBC1D22AQ8WUA7 517 aa5.85□□□□□ -1.47
USP54-216ENST00000498143 NCAPGQ9BPX3 1015 aa5.85□□□□□ -1.47
USP54-216ENST00000498143 SATB2Q9UPW6 733 aa5.85□□□□□ -1.47
USP54-216ENST00000498143 COMMD10Q9Y6G5 202 aa5.85□□□□□ -1.47
USP54-216ENST00000498143 TOPAZ1Q8N9V7 1692 aa5.85□□□□□ -1.47
USP54-216ENST00000498143 SPATA31E1Q6ZUB1 1445 aa5.85□□□□□ -1.47
USP54-216ENST00000498143 MYO18BQ8IUG5 2567 aa5.85□□□□□ -1.47
USP54-216ENST00000498143 A0A1B0GUA9 196 aa5.85□□□□□ -1.47
USP54-216ENST00000498143 NCK2O43639 380 aa5.85□□□□□ -1.47
USP54-216ENST00000498143 TRIM21P19474 475 aaKnown RBP5.85□□□□□ -1.47
USP54-216ENST00000498143 BMP8BP34820 402 aa5.85□□□□□ -1.47
USP54-216ENST00000498143 NHLH1Q02575 133 aa5.85□□□□□ -1.47
USP54-216ENST00000498143 SLC20A2Q08357 652 aa5.85□□□□□ -1.47
USP54-216ENST00000498143 GRIN2CQ14957 1233 aa5.85□□□□□ -1.47
USP54-216ENST00000498143 CCDC96Q2M329 555 aa5.85□□□□□ -1.47
USP54-216ENST00000498143 GNASQ5JWF2 1037 aa5.85□□□□□ -1.47
USP54-216ENST00000498143 NBPF12Q5TAG4 269 aaPredicted RBP5.85□□□□□ -1.47
USP54-216ENST00000498143 CCDC65Q8IXS2 484 aa5.85□□□□□ -1.47
USP54-216ENST00000498143 RMI1Q9H9A7 625 aa5.85□□□□□ -1.47
USP54-216ENST00000498143 TMA7Q9Y2S6 64 aaKnown RBP5.85□□□□□ -1.47
USP54-216ENST00000498143 CD163L1Q9NR16 1453 aa5.85□□□□□ -1.47
USP54-216ENST00000498143 CYP2C8P10632 490 aa5.85□□□□□ -1.47
USP54-216ENST00000498143 USP5P45974 858 aa5.85□□□□□ -1.47
USP54-216ENST00000498143 PPM1FP49593 454 aaPredicted RBP5.85□□□□□ -1.47
USP54-216ENST00000498143 RABEP1Q15276 862 aa5.85□□□□□ -1.47
USP54-216ENST00000498143 WWC2Q6AWC2 1192 aa5.85□□□□□ -1.47
USP54-216ENST00000498143 MICALCLQ6ZW33 695 aa5.85□□□□□ -1.47
USP54-216ENST00000498143 CENPQQ7L2Z9 268 aaPredicted RBP5.85□□□□□ -1.47
USP54-216ENST00000498143 DRC7Q8IY82 874 aa5.85□□□□□ -1.47
USP54-216ENST00000498143 ACSF2Q96CM8 615 aaPredicted RBP5.85□□□□□ -1.47
USP54-216ENST00000498143 TDRD3Q9H7E2 651 aaKnown RBP5.85□□□□□ -1.47
USP54-216ENST00000498143 H3BQ06 376 aaPredicted RBP5.85□□□□□ -1.47
USP54-216ENST00000498143 NCAM2O15394 837 aa5.85□□□□□ -1.47
USP54-216ENST00000498143 ACRP10323 421 aa5.85□□□□□ -1.47
USP54-216ENST00000498143 TFF2Q03403 129 aa5.85□□□□□ -1.47
USP54-216ENST00000498143 DMTNQ08495 405 aa5.85□□□□□ -1.47
USP54-216ENST00000498143 AASDHQ4L235 1098 aaPredicted RBP5.85□□□□□ -1.47
USP54-216ENST00000498143 GPR161Q8N6U8 529 aaKnown RBP5.85□□□□□ -1.47
USP54-216ENST00000498143 WHAMMQ8TF30 809 aa5.85□□□□□ -1.47
USP54-216ENST00000498143 RNF25Q96BH1 459 aaPredicted RBP5.85□□□□□ -1.47
USP54-216ENST00000498143 XPNPEP3Q9NQH7 507 aa5.85□□□□□ -1.47
USP54-216ENST00000498143 EXOC1Q9NV70 894 aa5.85□□□□□ -1.47
USP54-216ENST00000498143 IFT57Q9NWB7 429 aa5.85□□□□□ -1.47
USP54-216ENST00000498143 MKL2Q9ULH7 1088 aa5.85□□□□□ -1.47
USP54-216ENST00000498143 VPS8Q8N3P4 1428 aa5.85□□□□□ -1.47
USP54-216ENST00000498143 IRF6O14896 467 aa5.84□□□□□ -1.47
USP54-216ENST00000498143 DCTN1Q14203 1278 aa5.84□□□□□ -1.47
USP54-216ENST00000498143 MYBPC2Q14324 1141 aa5.84□□□□□ -1.47
USP54-216ENST00000498143 JAKMIP3Q5VZ66 844 aa5.84□□□□□ -1.47
USP54-216ENST00000498143 MTA3Q9BTC8 594 aa5.84□□□□□ -1.47
USP54-216ENST00000498143 PCDHB9Q9Y5E1 797 aa5.84□□□□□ -1.47
USP54-216ENST00000498143 WDR90Q96KV7 1748 aa5.84□□□□□ -1.47
USP54-216ENST00000498143 PAX3P23760 479 aa5.84□□□□□ -1.47
USP54-216ENST00000498143 PROCA1Q8NCQ7 364 aaPredicted RBP5.84□□□□□ -1.47
USP54-216ENST00000498143 SEPT3Q9UH03 358 aa5.84□□□□□ -1.47
USP54-216ENST00000498143 IQSEC3Q9UPP2 1182 aaPredicted RBP5.84□□□□□ -1.47
USP54-216ENST00000498143 BTBD19C9JJ37 291 aa5.84□□□□□ -1.48
USP54-216ENST00000498143 CCL23P55773 120 aa5.84□□□□□ -1.48
USP54-216ENST00000498143 EXOC6Q8TAG9 804 aa5.84□□□□□ -1.48
USP54-216ENST00000498143 SREK1Q8WXA9 508 aaKnown RBP5.84□□□□□ -1.48
USP54-216ENST00000498143 ARGLU1Q9NWB6 273 aaPredicted RBP5.84□□□□□ -1.48
USP54-216ENST00000498143 GABBR1Q9UBS5 961 aa5.84□□□□□ -1.48
USP54-216ENST00000498143 XIRP1Q702N8 1843 aaKnown RBP5.83□□□□□ -1.48
USP54-216ENST00000498143 IGF2BP3O00425 579 aaKnown RBP eCLIP5.83□□□□□ -1.48
USP54-216ENST00000498143 DSG3P32926 999 aa5.83□□□□□ -1.48
USP54-216ENST00000498143 ABCD1P33897 745 aa5.83□□□□□ -1.48
USP54-216ENST00000498143 TPM4P67936 248 aa5.83□□□□□ -1.48
USP54-216ENST00000498143 BFSP2Q13515 415 aa5.83□□□□□ -1.48
USP54-216ENST00000498143 POTEEQ6S8J3 1075 aa5.83□□□□□ -1.48
USP54-216ENST00000498143 FBXL6Q8N531 539 aa5.83□□□□□ -1.48
USP54-216ENST00000498143 TRIML1Q8N9V2 468 aa5.83□□□□□ -1.48
USP54-216ENST00000498143 MTMR14Q8NCE2 650 aa5.83□□□□□ -1.48
USP54-216ENST00000498143 PXYLP1Q8TE99 480 aa5.83□□□□□ -1.48
USP54-216ENST00000498143 INO80Q9ULG1 1556 aaPredicted RBP5.83□□□□□ -1.48
USP54-216ENST00000498143 STXBP3O00186 592 aa5.83□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms