RNA–Protein interactions for RNA: ENST00000495485.1

HDAC3-214, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 797 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-214ENST00000495485 INCENPQ9NQS7 918 aa11.88□□□□□ -0.51
HDAC3-214ENST00000495485 GPHNQ9NQX3 736 aaPredicted RBP11.88□□□□□ -0.51
HDAC3-214ENST00000495485 GINM1Q9NU53 330 aa11.88□□□□□ -0.51
HDAC3-214ENST00000495485 FAM198AQ9UFP1 575 aa11.88□□□□□ -0.51
HDAC3-214ENST00000495485 HERC5Q9UII4 1024 aaKnown RBP11.88□□□□□ -0.51
HDAC3-214ENST00000495485 CNPY2Q9Y2B0 182 aa11.88□□□□□ -0.51
HDAC3-214ENST00000495485 ASTN2O75129 1339 aaPredicted RBP11.87□□□□□ -0.51
HDAC3-214ENST00000495485 FLT1P17948 1338 aa11.87□□□□□ -0.51
HDAC3-214ENST00000495485 FIBPO43427 364 aa11.87□□□□□ -0.51
HDAC3-214ENST00000495485 ADD1P35611 737 aaKnown RBP11.87□□□□□ -0.51
HDAC3-214ENST00000495485 TFAP4Q01664 338 aa11.87□□□□□ -0.51
HDAC3-214ENST00000495485 MAP3K10Q02779 954 aa11.87□□□□□ -0.51
HDAC3-214ENST00000495485 RESTQ13127 1097 aa11.87□□□□□ -0.51
HDAC3-214ENST00000495485 FOXD4L6Q3SYB3 417 aaPredicted RBP11.87□□□□□ -0.51
HDAC3-214ENST00000495485 CST9Q5W186 159 aa11.87□□□□□ -0.51
HDAC3-214ENST00000495485 FOXD4L3Q6VB84 417 aaPredicted RBP11.87□□□□□ -0.51
HDAC3-214ENST00000495485 C16orf86Q6ZW13 317 aa11.87□□□□□ -0.51
HDAC3-214ENST00000495485 FERMT3Q86UX7 667 aa11.87□□□□□ -0.51
HDAC3-214ENST00000495485 FOXP4Q8IVH2 680 aaPredicted RBP11.87□□□□□ -0.51
HDAC3-214ENST00000495485 ENAHQ8N8S7 591 aaPredicted RBP11.87□□□□□ -0.51
HDAC3-214ENST00000495485 ANKS1AQ92625 1134 aa11.87□□□□□ -0.51
HDAC3-214ENST00000495485 CCDC102AQ96A19 550 aa11.87□□□□□ -0.51
HDAC3-214ENST00000495485 TEPSINQ96N21 525 aa11.87□□□□□ -0.51
HDAC3-214ENST00000495485 SLC26A6Q9BXS9 759 aa11.87□□□□□ -0.51
HDAC3-214ENST00000495485 RNF26Q9BY78 433 aaPredicted RBP11.87□□□□□ -0.51
HDAC3-214ENST00000495485 OSBPL5Q9H0X9 879 aaPredicted RBP11.87□□□□□ -0.51
HDAC3-214ENST00000495485 PI4KBQ9UBF8 816 aa11.87□□□□□ -0.51
HDAC3-214ENST00000495485 PCDHAC2Q9Y5I4 1007 aa11.87□□□□□ -0.51
HDAC3-214ENST00000495485 MYH8P13535 1937 aa11.87□□□□□ -0.51
HDAC3-214ENST00000495485 CNTNAP1P78357 1384 aa11.87□□□□□ -0.51
HDAC3-214ENST00000495485 MYH15Q9Y2K3 1946 aa11.86□□□□□ -0.51
HDAC3-214ENST00000495485 CYP2D7A0A087X1C5 515 aa11.86□□□□□ -0.51
HDAC3-214ENST00000495485 TRAF5O00463 557 aa11.86□□□□□ -0.51
HDAC3-214ENST00000495485 PRDM1O75626 825 aa11.86□□□□□ -0.51
HDAC3-214ENST00000495485 NFIAQ12857 509 aa11.86□□□□□ -0.51
HDAC3-214ENST00000495485 CAVIN1Q6NZI2 390 aaKnown RBP11.86□□□□□ -0.51
HDAC3-214ENST00000495485 METTL16Q86W50 562 aaKnown RBP11.86□□□□□ -0.51
HDAC3-214ENST00000495485 ANKRD13AQ8IZ07 590 aa11.86□□□□□ -0.51
HDAC3-214ENST00000495485 CSRNP1Q96S65 589 aa11.86□□□□□ -0.51
HDAC3-214ENST00000495485 LZTS2Q9BRK4 669 aa11.86□□□□□ -0.51
HDAC3-214ENST00000495485 TRIM34Q9BYJ4 488 aa11.86□□□□□ -0.51
HDAC3-214ENST00000495485 ZNF341Q9BYN7 854 aa11.86□□□□□ -0.51
HDAC3-214ENST00000495485 TMEM39BQ9GZU3 492 aa11.86□□□□□ -0.51
HDAC3-214ENST00000495485 EHD4Q9H223 541 aa11.86□□□□□ -0.51
HDAC3-214ENST00000495485 BRMS1Q9HCU9 246 aa11.86□□□□□ -0.51
HDAC3-214ENST00000495485 ABT1Q9ULW3 272 aaKnown RBP11.86□□□□□ -0.51
HDAC3-214ENST00000495485 MYH6P13533 1939 aa11.86□□□□□ -0.51
HDAC3-214ENST00000495485 PRPF3O43395 683 aaKnown RBP11.85□□□□□ -0.51
HDAC3-214ENST00000495485 FDPSP14324 419 aaKnown RBP11.85□□□□□ -0.51
HDAC3-214ENST00000495485 CDC27P30260 824 aa11.85□□□□□ -0.51
HDAC3-214ENST00000495485 CDK8P49336 464 aa11.85□□□□□ -0.51
HDAC3-214ENST00000495485 MRE11P49959 708 aa11.85□□□□□ -0.51
HDAC3-214ENST00000495485 HUNKP57058 714 aa11.85□□□□□ -0.51
HDAC3-214ENST00000495485 TTLL12Q14166 644 aaPredicted RBP11.85□□□□□ -0.51
HDAC3-214ENST00000495485 NTRK3Q16288 839 aa11.85□□□□□ -0.51
HDAC3-214ENST00000495485 DEFB115Q30KQ5 88 aa11.85□□□□□ -0.51
HDAC3-214ENST00000495485 LDLRAD1Q5T700 205 aa11.85□□□□□ -0.51
HDAC3-214ENST00000495485 NBPF12Q5TAG4 269 aaPredicted RBP11.85□□□□□ -0.51
HDAC3-214ENST00000495485 ZSCAN29Q8IWY8 852 aaPredicted RBP11.85□□□□□ -0.51
HDAC3-214ENST00000495485 FAM177A1Q8N128 213 aaPredicted RBP11.85□□□□□ -0.51
HDAC3-214ENST00000495485 CRACR2BQ8N4Y2 399 aaPredicted RBP11.85□□□□□ -0.51
HDAC3-214ENST00000495485 NEDD1Q8NHV4 660 aa11.85□□□□□ -0.51
HDAC3-214ENST00000495485 ANP32BQ92688 251 aaKnown RBP11.85□□□□□ -0.51
HDAC3-214ENST00000495485 CCDC17Q96LX7 622 aa11.85□□□□□ -0.51
HDAC3-214ENST00000495485 ZNF408Q9H9D4 720 aa11.85□□□□□ -0.51
HDAC3-214ENST00000495485 SAP30BPQ9UHR5 308 aaKnown RBP11.85□□□□□ -0.51
HDAC3-214ENST00000495485 TACC3Q9Y6A5 838 aa11.85□□□□□ -0.51
HDAC3-214ENST00000495485 DDX60LQ5H9U9 1706 aaKnown RBP11.84□□□□□ -0.51
HDAC3-214ENST00000495485 CYP2D6P10635 497 aa11.84□□□□□ -0.51
HDAC3-214ENST00000495485 ZNF445P59923 1031 aa11.84□□□□□ -0.51
HDAC3-214ENST00000495485 PICALMQ13492 652 aa11.84□□□□□ -0.51
HDAC3-214ENST00000495485 FAM47AQ5JRC9 791 aa11.84□□□□□ -0.51
HDAC3-214ENST00000495485 CCDC183Q5T5S1 534 aa11.84□□□□□ -0.51
HDAC3-214ENST00000495485 KRT40Q6A162 431 aa11.84□□□□□ -0.51
HDAC3-214ENST00000495485 RGMBQ6NW40 437 aa11.84□□□□□ -0.51
HDAC3-214ENST00000495485 CCDC144CPQ8IYA2 1237 aa11.84□□□□□ -0.51
HDAC3-214ENST00000495485 JMYQ8N9B5 988 aa11.84□□□□□ -0.51
HDAC3-214ENST00000495485 KLRG1Q96E93 195 aa11.84□□□□□ -0.51
HDAC3-214ENST00000495485 SERPINB13Q9UIV8 391 aa11.84□□□□□ -0.51
HDAC3-214ENST00000495485 ZNF112Q9UJU3 913 aa11.84□□□□□ -0.51
HDAC3-214ENST00000495485 CSADQ9Y600 493 aa11.84□□□□□ -0.51
HDAC3-214ENST00000495485 YEATS4O95619 227 aa11.83□□□□□ -0.52
HDAC3-214ENST00000495485 ZBTB48P10074 688 aaPredicted RBP11.83□□□□□ -0.52
HDAC3-214ENST00000495485 RXRAP19793 462 aa11.83□□□□□ -0.52
HDAC3-214ENST00000495485 RASA1P20936 1047 aa11.83□□□□□ -0.52
HDAC3-214ENST00000495485 MAP2K2P36507 400 aa11.83□□□□□ -0.52
HDAC3-214ENST00000495485 FOSBP53539 338 aa11.83□□□□□ -0.52
HDAC3-214ENST00000495485 CACNB3P54284 484 aa11.83□□□□□ -0.52
HDAC3-214ENST00000495485 MAP3K9P80192 1104 aa11.83□□□□□ -0.52
HDAC3-214ENST00000495485 TCP10Q12799 353 aa11.83□□□□□ -0.52
HDAC3-214ENST00000495485 NOGQ13253 232 aa11.83□□□□□ -0.52
HDAC3-214ENST00000495485 SF3A1Q15459 793 aaKnown RBP11.83□□□□□ -0.52
HDAC3-214ENST00000495485 NOL9Q5SY16 702 aaKnown RBP11.83□□□□□ -0.52
HDAC3-214ENST00000495485 RAB11FIP4Q86YS3 637 aa11.83□□□□□ -0.52
HDAC3-214ENST00000495485 PNMA1Q8ND90 353 aa11.83□□□□□ -0.52
HDAC3-214ENST00000495485 GPT2Q8TD30 523 aa11.83□□□□□ -0.52
HDAC3-214ENST00000495485 KCNG4Q8TDN1 519 aa11.83□□□□□ -0.52
HDAC3-214ENST00000495485 PHKBQ93100 1093 aa11.83□□□□□ -0.52
HDAC3-214ENST00000495485 MYL10Q9BUA6 226 aa11.83□□□□□ -0.52
HDAC3-214ENST00000495485 FOXP1Q9H334 677 aaPredicted RBP11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms