RNA–Protein interactions for RNA: ENST00000493815.5

PDLIM7-208, Transcript of PDZ and LIM domain 7, humanhuman

TSL 1 (best)

Gene PDLIM7, Length 1,686 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM7-208ENST00000493815 TMEM47Q9BQJ4 181 aa21.05■□□□□ 0.96
PDLIM7-208ENST00000493815 LRRC2Q9BYS8 371 aa21.05■□□□□ 0.96
PDLIM7-208ENST00000493815 GPHNQ9NQX3 736 aaPredicted RBP21.05■□□□□ 0.96
PDLIM7-208ENST00000493815 PDHXO00330 501 aa21.04■□□□□ 0.96
PDLIM7-208ENST00000493815 VCAM1P19320 739 aa21.04■□□□□ 0.96
PDLIM7-208ENST00000493815 NOVP48745 357 aa21.04■□□□□ 0.96
PDLIM7-208ENST00000493815 RASGRP2Q7LDG7 609 aa21.04■□□□□ 0.96
PDLIM7-208ENST00000493815 PROCA1Q8NCQ7 364 aaPredicted RBP21.04■□□□□ 0.96
PDLIM7-208ENST00000493815 MKL1Q969V6 931 aa21.04■□□□□ 0.96
PDLIM7-208ENST00000493815 SH2D4AQ9H788 454 aa21.04■□□□□ 0.96
PDLIM7-208ENST00000493815 VCPKMTQ9H867 229 aa21.04■□□□□ 0.96
PDLIM7-208ENST00000493815 SENP2Q9HC62 589 aa21.04■□□□□ 0.96
PDLIM7-208ENST00000493815 AGTPBP1Q9UPW5 1226 aa21.04■□□□□ 0.96
PDLIM7-208ENST00000493815 F5H6K3 240 aa21.03■□□□□ 0.96
PDLIM7-208ENST00000493815 PRC1O43663 620 aa21.03■□□□□ 0.96
PDLIM7-208ENST00000493815 TRPA1O75762 1119 aa21.03■□□□□ 0.96
PDLIM7-208ENST00000493815 KLRC3Q07444 240 aa21.03■□□□□ 0.96
PDLIM7-208ENST00000493815 KRT32Q14532 448 aa21.03■□□□□ 0.96
PDLIM7-208ENST00000493815 JMYQ8N9B5 988 aa21.03■□□□□ 0.96
PDLIM7-208ENST00000493815 NUP88Q99567 741 aaPredicted RBP21.03■□□□□ 0.96
PDLIM7-208ENST00000493815 IFIT3O14879 490 aaKnown RBP21.02■□□□□ 0.96
PDLIM7-208ENST00000493815 NDUFB10O96000 172 aa21.02■□□□□ 0.96
PDLIM7-208ENST00000493815 MCM5P33992 734 aa21.02■□□□□ 0.96
PDLIM7-208ENST00000493815 MAP2K1Q02750 393 aaPredicted RBP21.02■□□□□ 0.96
PDLIM7-208ENST00000493815 ANKRD23Q86SG2 305 aa21.02■□□□□ 0.96
PDLIM7-208ENST00000493815 REM2Q8IYK8 340 aaPredicted RBP21.02■□□□□ 0.96
PDLIM7-208ENST00000493815 GOPCQ9HD26 462 aa21.02■□□□□ 0.96
PDLIM7-208ENST00000493815 RNF186Q9NXI6 227 aa21.02■□□□□ 0.96
PDLIM7-208ENST00000493815 EIF5BO60841 1220 aaKnown RBP21.02■□□□□ 0.95
PDLIM7-208ENST00000493815 CYP2C8P10632 490 aa21.02■□□□□ 0.95
PDLIM7-208ENST00000493815 NT5C2P49902 561 aa21.02■□□□□ 0.95
PDLIM7-208ENST00000493815 SEC23AQ15436 765 aa21.02■□□□□ 0.95
PDLIM7-208ENST00000493815 DGKHQ86XP1 1220 aa21.02■□□□□ 0.95
PDLIM7-208ENST00000493815 C12orf42Q96LP6 360 aa21.02■□□□□ 0.95
PDLIM7-208ENST00000493815 RPAP3Q9H6T3 665 aaPredicted RBP21.02■□□□□ 0.95
PDLIM7-208ENST00000493815 TSKSQ9UJT2 592 aa21.02■□□□□ 0.95
PDLIM7-208ENST00000493815 TOP1P11387 765 aaKnown RBP21.01■□□□□ 0.95
PDLIM7-208ENST00000493815 CASTP20810 708 aaKnown RBP21.01■□□□□ 0.95
PDLIM7-208ENST00000493815 TMEM67Q5HYA8 995 aa21.01■□□□□ 0.95
PDLIM7-208ENST00000493815 PPP4R3BQ5MIZ7 849 aa21.01■□□□□ 0.95
PDLIM7-208ENST00000493815 OTUD7BQ6GQQ9 843 aa21.01■□□□□ 0.95
PDLIM7-208ENST00000493815 TTC14Q96N46 770 aa21.01■□□□□ 0.95
PDLIM7-208ENST00000493815 R3HDMLQ9H3Y0 253 aa21.01■□□□□ 0.95
PDLIM7-208ENST00000493815 WBP1LQ9NX94 342 aa21.01■□□□□ 0.95
PDLIM7-208ENST00000493815 MYH4Q9Y623 1939 aa21■□□□□ 0.95
PDLIM7-208ENST00000493815 LOC285556D6RIA3 1793 aa21■□□□□ 0.95
PDLIM7-208ENST00000493815 TBC1D8O95759 1140 aa21■□□□□ 0.95
PDLIM7-208ENST00000493815 FAM83BQ5T0W9 1011 aa21■□□□□ 0.95
PDLIM7-208ENST00000493815 IFIT1BQ5T764 474 aaKnown RBP21■□□□□ 0.95
PDLIM7-208ENST00000493815 SLFN13Q68D06 897 aa21■□□□□ 0.95
PDLIM7-208ENST00000493815 IGDCC4Q8TDY8 1250 aa21■□□□□ 0.95
PDLIM7-208ENST00000493815 BACH2Q9BYV9 841 aa21■□□□□ 0.95
PDLIM7-208ENST00000493815 TANGO6Q9C0B7 1094 aa21■□□□□ 0.95
PDLIM7-208ENST00000493815 ERICH2A1L162 156 aa20.99■□□□□ 0.95
PDLIM7-208ENST00000493815 TAF1CQ15572 869 aaPredicted RBP20.99■□□□□ 0.95
PDLIM7-208ENST00000493815 SAMD1Q6SPF0 538 aaPredicted RBP20.99■□□□□ 0.95
PDLIM7-208ENST00000493815 DHX32Q7L7V1 743 aaKnown RBP20.99■□□□□ 0.95
PDLIM7-208ENST00000493815 GMCL1P1Q8NEA9 526 aa20.99■□□□□ 0.95
PDLIM7-208ENST00000493815 LPAR1Q92633 364 aa20.99■□□□□ 0.95
PDLIM7-208ENST00000493815 BEGAINQ9BUH8 593 aa20.99■□□□□ 0.95
PDLIM7-208ENST00000493815 KAT14Q9H8E8 782 aa20.99■□□□□ 0.95
PDLIM7-208ENST00000493815 EXOSC10Q01780 885 aaKnown RBP20.99■□□□□ 0.95
PDLIM7-208ENST00000493815 CRHR2Q13324 411 aa20.99■□□□□ 0.95
PDLIM7-208ENST00000493815 WTAPQ15007 396 aa20.99■□□□□ 0.95
PDLIM7-208ENST00000493815 SART3Q15020 963 aaKnown RBP20.99■□□□□ 0.95
PDLIM7-208ENST00000493815 CCDC178Q5BJE1 867 aa20.99■□□□□ 0.95
PDLIM7-208ENST00000493815 BLOC1S2Q6QNY1 142 aa20.99■□□□□ 0.95
PDLIM7-208ENST00000493815 ANKS1AQ92625 1134 aa20.99■□□□□ 0.95
PDLIM7-208ENST00000493815 UPF3BQ9BZI7 483 aaKnown RBP20.99■□□□□ 0.95
PDLIM7-208ENST00000493815 ASCC2Q9H1I8 757 aaPredicted RBP20.99■□□□□ 0.95
PDLIM7-208ENST00000493815 ISY1Q9ULR0 285 aaKnown RBP20.99■□□□□ 0.95
PDLIM7-208ENST00000493815 PNMA1Q8ND90 353 aa20.98■□□□□ 0.95
PDLIM7-208ENST00000493815 LY9Q9HBG7 655 aa20.98■□□□□ 0.95
PDLIM7-208ENST00000493815 SH2B2O14492 632 aaPredicted RBP20.97■□□□□ 0.95
PDLIM7-208ENST00000493815 WDR46O15213 610 aaKnown RBP20.97■□□□□ 0.95
PDLIM7-208ENST00000493815 ALDH1A1P00352 501 aa20.97■□□□□ 0.95
PDLIM7-208ENST00000493815 HMGB1P09429 215 aaKnown RBP20.97■□□□□ 0.95
PDLIM7-208ENST00000493815 PSMA5P28066 241 aa20.97■□□□□ 0.95
PDLIM7-208ENST00000493815 HOXA7P31268 230 aaPredicted RBP20.97■□□□□ 0.95
PDLIM7-208ENST00000493815 IRX3P78415 501 aaPredicted RBP20.97■□□□□ 0.95
PDLIM7-208ENST00000493815 CATSPERGQ6ZRH7 1159 aa20.97■□□□□ 0.95
PDLIM7-208ENST00000493815 P2RX7Q99572 595 aaKnown RBP20.97■□□□□ 0.95
PDLIM7-208ENST00000493815 C22orf23Q9BZE7 217 aa20.97■□□□□ 0.95
PDLIM7-208ENST00000493815 FBXO28Q9NVF7 368 aa20.97■□□□□ 0.95
PDLIM7-208ENST00000493815 SYNPO2Q9UMS6 1093 aa20.97■□□□□ 0.95
PDLIM7-208ENST00000493815 USP17L15C9J2P7 530 aa20.96■□□□□ 0.95
PDLIM7-208ENST00000493815 USP17L13C9JLJ4 530 aa20.96■□□□□ 0.95
PDLIM7-208ENST00000493815 USP17L11C9JVI0 530 aa20.96■□□□□ 0.95
PDLIM7-208ENST00000493815 USP17L18D6R9N7 530 aa20.96■□□□□ 0.95
PDLIM7-208ENST00000493815 USP17L22D6RA61 530 aa20.96■□□□□ 0.95
PDLIM7-208ENST00000493815 USP17L17D6RBQ6 530 aa20.96■□□□□ 0.95
PDLIM7-208ENST00000493815 USP17L19D6RCP7 530 aa20.96■□□□□ 0.95
PDLIM7-208ENST00000493815 USP17L20D6RJB6 530 aa20.96■□□□□ 0.95
PDLIM7-208ENST00000493815 CA12O43570 354 aa20.96■□□□□ 0.95
PDLIM7-208ENST00000493815 PEX10O60683 326 aa20.96■□□□□ 0.95
PDLIM7-208ENST00000493815 RPS6KB1P23443 525 aa20.96■□□□□ 0.95
PDLIM7-208ENST00000493815 SLC1A4P43007 532 aa20.96■□□□□ 0.95
PDLIM7-208ENST00000493815 USP17L24Q0WX57 530 aa20.96■□□□□ 0.95
PDLIM7-208ENST00000493815 KCTD1Q719H9 257 aa20.96■□□□□ 0.95
PDLIM7-208ENST00000493815 SLC45A1Q9Y2W3 748 aa20.96■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms