RNA–Protein interactions for RNA: ENST00000493608.1

COL6A3-214, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 742 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-214ENST00000493608 BACE1P56817 501 aa12.86□□□□□ -0.35
COL6A3-214ENST00000493608 RAB3GAP1Q15042 981 aa12.86□□□□□ -0.35
COL6A3-214ENST00000493608 ZYXQ15942 572 aaKnown RBP12.86□□□□□ -0.35
COL6A3-214ENST00000493608 SH3D19Q5HYK7 790 aa12.86□□□□□ -0.35
COL6A3-214ENST00000493608 ARMC5Q96C12 935 aa12.86□□□□□ -0.35
COL6A3-214ENST00000493608 TBC1D2Q9BYX2 928 aa12.86□□□□□ -0.35
COL6A3-214ENST00000493608 PUS7LQ9H0K6 701 aaKnown RBP12.86□□□□□ -0.35
COL6A3-214ENST00000493608 ASCC2Q9H1I8 757 aaPredicted RBP12.86□□□□□ -0.35
COL6A3-214ENST00000493608 EHD4Q9H223 541 aa12.86□□□□□ -0.35
COL6A3-214ENST00000493608 SRRDQ9UH36 339 aa12.86□□□□□ -0.35
COL6A3-214ENST00000493608 GABRQQ9UN88 632 aa12.86□□□□□ -0.35
COL6A3-214ENST00000493608 CYP2D7A0A087X1C5 515 aa12.85□□□□□ -0.35
COL6A3-214ENST00000493608 USP17L10C9JJH3 530 aa12.85□□□□□ -0.35
COL6A3-214ENST00000493608 ABCB5Q2M3G0 1257 aa12.85□□□□□ -0.35
COL6A3-214ENST00000493608 NBPF11Q86T75 865 aa12.85□□□□□ -0.35
COL6A3-214ENST00000493608 SLC44A5Q8NCS7 719 aa12.85□□□□□ -0.35
COL6A3-214ENST00000493608 DYNLL2Q96FJ2 89 aa12.85□□□□□ -0.35
COL6A3-214ENST00000493608 GPATCH3Q96I76 525 aa12.85□□□□□ -0.35
COL6A3-214ENST00000493608 TMOD4Q9NZQ9 345 aa12.85□□□□□ -0.35
COL6A3-214ENST00000493608 PNMA3Q9UL41 463 aa12.85□□□□□ -0.35
COL6A3-214ENST00000493608 SLC4A4Q9Y6R1 1079 aa12.85□□□□□ -0.35
COL6A3-214ENST00000493608 TNRC18O15417 2968 aaPredicted RBP12.85□□□□□ -0.35
COL6A3-214ENST00000493608 DDX60LQ5H9U9 1706 aaKnown RBP12.85□□□□□ -0.35
COL6A3-214ENST00000493608 MYH8P13535 1937 aa12.84□□□□□ -0.35
COL6A3-214ENST00000493608 C19orf81C9J6K1 198 aa12.84□□□□□ -0.35
COL6A3-214ENST00000493608 MPHOSPH10O00566 681 aaKnown RBP12.84□□□□□ -0.35
COL6A3-214ENST00000493608 DPYSL4O14531 572 aa12.84□□□□□ -0.35
COL6A3-214ENST00000493608 GNRH1P01148 92 aa12.84□□□□□ -0.35
COL6A3-214ENST00000493608 EN2P19622 333 aaPredicted RBP12.84□□□□□ -0.35
COL6A3-214ENST00000493608 HOXD10P28358 340 aa12.84□□□□□ -0.35
COL6A3-214ENST00000493608 FCGRTP55899 365 aa12.84□□□□□ -0.35
COL6A3-214ENST00000493608 PRKCZQ05513 592 aa12.84□□□□□ -0.35
COL6A3-214ENST00000493608 GABPAQ06546 454 aa12.84□□□□□ -0.35
COL6A3-214ENST00000493608 PABPC4Q13310 644 aaKnown RBP eCLIP12.84□□□□□ -0.35
COL6A3-214ENST00000493608 UBE3CQ15386 1083 aa12.84□□□□□ -0.35
COL6A3-214ENST00000493608 ANKRD45Q5TZF3 282 aa12.84□□□□□ -0.35
COL6A3-214ENST00000493608 ZSCAN25Q6NSZ9 544 aa12.84□□□□□ -0.35
COL6A3-214ENST00000493608 RAET1EQ8TD07 263 aa12.84□□□□□ -0.35
COL6A3-214ENST00000493608 ACER1Q8TDN7 264 aa12.84□□□□□ -0.35
COL6A3-214ENST00000493608 ZNF333Q96JL9 665 aa12.84□□□□□ -0.35
COL6A3-214ENST00000493608 P2RX7Q99572 595 aaKnown RBP12.84□□□□□ -0.35
COL6A3-214ENST00000493608 ZBED2Q9BTP6 218 aa12.84□□□□□ -0.35
COL6A3-214ENST00000493608 CABP5Q9NP86 173 aa12.84□□□□□ -0.35
COL6A3-214ENST00000493608 GINM1Q9NU53 330 aa12.84□□□□□ -0.35
COL6A3-214ENST00000493608 MYPNQ86TC9 1320 aa12.84□□□□□ -0.35
COL6A3-214ENST00000493608 PDE4DIPQ5VU43 2346 aa12.83□□□□□ -0.36
COL6A3-214ENST00000493608 USP17L12C9JPN9 530 aa12.83□□□□□ -0.36
COL6A3-214ENST00000493608 USP17L21D6R901 530 aa12.83□□□□□ -0.36
COL6A3-214ENST00000493608 GUCY1A2P33402 732 aa12.83□□□□□ -0.36
COL6A3-214ENST00000493608 IRX3P78415 501 aaPredicted RBP12.83□□□□□ -0.36
COL6A3-214ENST00000493608 SEPT2Q15019 361 aa12.83□□□□□ -0.36
COL6A3-214ENST00000493608 KBTBD3Q8NAB2 608 aa12.83□□□□□ -0.36
COL6A3-214ENST00000493608 FEZ1Q99689 392 aa12.83□□□□□ -0.36
COL6A3-214ENST00000493608 ATP8A2Q9NTI2 1148 aa12.83□□□□□ -0.36
COL6A3-214ENST00000493608 BHMG1C9JSJ3 638 aaPredicted RBP12.82□□□□□ -0.36
COL6A3-214ENST00000493608 TNPO2O14787 897 aaKnown RBP12.82□□□□□ -0.36
COL6A3-214ENST00000493608 GRK4P32298 578 aa12.82□□□□□ -0.36
COL6A3-214ENST00000493608 PRMT2P55345 433 aa12.82□□□□□ -0.36
COL6A3-214ENST00000493608 MTFR1Q15390 333 aa12.82□□□□□ -0.36
COL6A3-214ENST00000493608 USP17L2Q6R6M4 530 aa12.82□□□□□ -0.36
COL6A3-214ENST00000493608 STK11IPQ8N1F8 1099 aa12.82□□□□□ -0.36
COL6A3-214ENST00000493608 PI4K2BQ8TCG2 481 aa12.82□□□□□ -0.36
COL6A3-214ENST00000493608 OSBP2Q969R2 916 aa12.82□□□□□ -0.36
COL6A3-214ENST00000493608 BIN2Q9UBW5 565 aaPredicted RBP12.82□□□□□ -0.36
COL6A3-214ENST00000493608 RNF113AO15541 343 aaKnown RBP12.81□□□□□ -0.36
COL6A3-214ENST00000493608 HOXA7P31268 230 aaPredicted RBP12.81□□□□□ -0.36
COL6A3-214ENST00000493608 GCLCP48506 637 aaPredicted RBP12.81□□□□□ -0.36
COL6A3-214ENST00000493608 FLT3LGP49771 235 aa12.81□□□□□ -0.36
COL6A3-214ENST00000493608 C12orf60Q5U649 245 aa12.81□□□□□ -0.36
COL6A3-214ENST00000493608 CTR9Q6PD62 1173 aa12.81□□□□□ -0.36
COL6A3-214ENST00000493608 EXOC6Q8TAG9 804 aa12.81□□□□□ -0.36
COL6A3-214ENST00000493608 STRBPQ96SI9 672 aaKnown RBP12.81□□□□□ -0.36
COL6A3-214ENST00000493608 TTC41PQ6P2S7 1318 aa12.81□□□□□ -0.36
COL6A3-214ENST00000493608 BRCA2P51587 3418 aa12.8□□□□□ -0.36
COL6A3-214ENST00000493608 A0A1W2PRG0 241 aa12.8□□□□□ -0.36
COL6A3-214ENST00000493608 GSG1L2A8MUP6 293 aa12.8□□□□□ -0.36
COL6A3-214ENST00000493608 M0R2C6 588 aa12.8□□□□□ -0.36
COL6A3-214ENST00000493608 ERC2O15083 957 aa12.8□□□□□ -0.36
COL6A3-214ENST00000493608 ADCY3O60266 1144 aa12.8□□□□□ -0.36
COL6A3-214ENST00000493608 AKR1B1P15121 316 aa12.8□□□□□ -0.36
COL6A3-214ENST00000493608 ELNP15502 786 aa12.8□□□□□ -0.36
COL6A3-214ENST00000493608 CDK8P49336 464 aa12.8□□□□□ -0.36
COL6A3-214ENST00000493608 HERVK_113P62684 666 aa12.8□□□□□ -0.36
COL6A3-214ENST00000493608 FAM110CQ1W6H9 321 aa12.8□□□□□ -0.36
COL6A3-214ENST00000493608 Q3C1V9 767 aa12.8□□□□□ -0.36
COL6A3-214ENST00000493608 CLEC10AQ8IUN9 316 aa12.8□□□□□ -0.36
COL6A3-214ENST00000493608 APPBP2Q92624 585 aa12.8□□□□□ -0.36
COL6A3-214ENST00000493608 COA7Q96BR5 231 aa12.8□□□□□ -0.36
COL6A3-214ENST00000493608 DDRGK1Q96HY6 314 aa12.8□□□□□ -0.36
COL6A3-214ENST00000493608 SEC62Q99442 399 aaKnown RBP12.8□□□□□ -0.36
COL6A3-214ENST00000493608 PAGR1Q9BTK6 254 aa12.8□□□□□ -0.36
COL6A3-214ENST00000493608 TXNRD2Q9NNW7 524 aa12.8□□□□□ -0.36
COL6A3-214ENST00000493608 MINDY4BA8MYZ0 360 aa12.79□□□□□ -0.36
COL6A3-214ENST00000493608 GLRX3O76003 335 aaKnown RBP12.79□□□□□ -0.36
COL6A3-214ENST00000493608 MX1P20591 662 aa12.79□□□□□ -0.36
COL6A3-214ENST00000493608 HDAC1Q13547 482 aaPredicted RBP12.79□□□□□ -0.36
COL6A3-214ENST00000493608 B4GALNT3Q6L9W6 998 aa12.79□□□□□ -0.36
COL6A3-214ENST00000493608 TYW1BQ6NUM6 668 aa12.79□□□□□ -0.36
COL6A3-214ENST00000493608 AMOTL1Q8IY63 956 aa12.79□□□□□ -0.36
COL6A3-214ENST00000493608 FSD1Q9BTV5 496 aa12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 95.6 ms