RNA–Protein interactions for RNA: ENST00000492357.1

USP54-214, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 3

Gene USP54, Length 353 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-214ENST00000492357 ATP6V1DQ9Y5K8 247 aa11.23□□□□□ -0.61
USP54-214ENST00000492357 PAPPA2Q9BXP8 1791 aa11.23□□□□□ -0.61
USP54-214ENST00000492357 PTPDC1A2A3K4 754 aa11.22□□□□□ -0.61
USP54-214ENST00000492357 PALM3A6NDB9 673 aaPredicted RBP11.22□□□□□ -0.61
USP54-214ENST00000492357 POTECB2RU33 542 aa11.22□□□□□ -0.61
USP54-214ENST00000492357 MPHOSPH10O00566 681 aaKnown RBP11.22□□□□□ -0.61
USP54-214ENST00000492357 PRPF3O43395 683 aaKnown RBP11.22□□□□□ -0.61
USP54-214ENST00000492357 PLA2G6O60733 806 aa11.22□□□□□ -0.61
USP54-214ENST00000492357 FMNL1O95466 1100 aaPredicted RBP11.22□□□□□ -0.61
USP54-214ENST00000492357 XBP1P17861 261 aa11.22□□□□□ -0.61
USP54-214ENST00000492357 USP14P54578 494 aa11.22□□□□□ -0.61
USP54-214ENST00000492357 STK3Q13188 491 aa11.22□□□□□ -0.61
USP54-214ENST00000492357 CLEC17AQ6ZS10 378 aa11.22□□□□□ -0.61
USP54-214ENST00000492357 KRT26Q7Z3Y9 468 aa11.22□□□□□ -0.61
USP54-214ENST00000492357 STK11IPQ8N1F8 1099 aa11.22□□□□□ -0.61
USP54-214ENST00000492357 NECAB1Q8N987 351 aa11.22□□□□□ -0.61
USP54-214ENST00000492357 LPAR1Q92633 364 aa11.22□□□□□ -0.61
USP54-214ENST00000492357 WDR18Q9BV38 432 aa11.22□□□□□ -0.61
USP54-214ENST00000492357 GOPCQ9HD26 462 aa11.22□□□□□ -0.61
USP54-214ENST00000492357 FAM217BQ9NTX9 383 aaPredicted RBP11.22□□□□□ -0.61
USP54-214ENST00000492357 TMX2Q9Y320 296 aa11.22□□□□□ -0.61
USP54-214ENST00000492357 STX6O43752 255 aa11.21□□□□□ -0.61
USP54-214ENST00000492357 NMT2O60551 498 aa11.21□□□□□ -0.61
USP54-214ENST00000492357 CTDNEP1O95476 244 aa11.21□□□□□ -0.61
USP54-214ENST00000492357 BRD1O95696 1058 aa11.21□□□□□ -0.61
USP54-214ENST00000492357 GH2P01242 217 aa11.21□□□□□ -0.61
USP54-214ENST00000492357 PARP1P09874 1014 aaKnown RBP11.21□□□□□ -0.61
USP54-214ENST00000492357 IREB2P48200 963 aaKnown RBP11.21□□□□□ -0.61
USP54-214ENST00000492357 SLC4A3P48751 1232 aa11.21□□□□□ -0.61
USP54-214ENST00000492357 CCT2P78371 535 aaKnown RBP11.21□□□□□ -0.61
USP54-214ENST00000492357 AKAP17AQ02040 695 aaKnown RBP11.21□□□□□ -0.61
USP54-214ENST00000492357 SSRP1Q08945 709 aaKnown RBP11.21□□□□□ -0.61
USP54-214ENST00000492357 RAB3GAP1Q15042 981 aa11.21□□□□□ -0.61
USP54-214ENST00000492357 SLC4A8Q2Y0W8 1093 aa11.21□□□□□ -0.61
USP54-214ENST00000492357 NBPF12Q5TAG4 269 aaPredicted RBP11.21□□□□□ -0.61
USP54-214ENST00000492357 LDHDQ86WU2 507 aa11.21□□□□□ -0.61
USP54-214ENST00000492357 SCYL3Q8IZE3 742 aa11.21□□□□□ -0.61
USP54-214ENST00000492357 KLRG1Q96E93 195 aa11.21□□□□□ -0.61
USP54-214ENST00000492357 ZSCAN16Q9H4T2 348 aaPredicted RBP11.21□□□□□ -0.61
USP54-214ENST00000492357 SENP2Q9HC62 589 aa11.21□□□□□ -0.61
USP54-214ENST00000492357 SH3GLB2Q9NR46 395 aa11.21□□□□□ -0.61
USP54-214ENST00000492357 CLIP2Q9UDT6 1046 aa11.21□□□□□ -0.61
USP54-214ENST00000492357 PNMA2Q9UL42 364 aa11.21□□□□□ -0.61
USP54-214ENST00000492357 NAP1L2Q9ULW6 460 aaPredicted RBP11.21□□□□□ -0.61
USP54-214ENST00000492357 SSC5DA1L4H1 1573 aa11.2□□□□□ -0.62
USP54-214ENST00000492357 ASTN2O75129 1339 aaPredicted RBP11.2□□□□□ -0.62
USP54-214ENST00000492357 USP17L5A8MUK1 530 aa11.2□□□□□ -0.62
USP54-214ENST00000492357 C19orf81C9J6K1 198 aa11.2□□□□□ -0.62
USP54-214ENST00000492357 FDX1P10109 184 aa11.2□□□□□ -0.62
USP54-214ENST00000492357 PDHBP11177 359 aa11.2□□□□□ -0.62
USP54-214ENST00000492357 EEF2P13639 858 aaKnown RBP11.2□□□□□ -0.62
USP54-214ENST00000492357 PTMSP20962 102 aa11.2□□□□□ -0.62
USP54-214ENST00000492357 SYT1P21579 422 aa11.2□□□□□ -0.62
USP54-214ENST00000492357 CDC27P30260 824 aa11.2□□□□□ -0.62
USP54-214ENST00000492357 GUCY1A2P33402 732 aa11.2□□□□□ -0.62
USP54-214ENST00000492357 ADD1P35611 737 aaKnown RBP11.2□□□□□ -0.62
USP54-214ENST00000492357 ZNF543Q08ER8 600 aa11.2□□□□□ -0.62
USP54-214ENST00000492357 FUT2Q10981 343 aa11.2□□□□□ -0.62
USP54-214ENST00000492357 SEPT2Q15019 361 aa11.2□□□□□ -0.62
USP54-214ENST00000492357 LARP1BQ659C4 914 aaKnown RBP11.2□□□□□ -0.62
USP54-214ENST00000492357 DDX55Q8NHQ9 600 aaKnown RBP eCLIP11.2□□□□□ -0.62
USP54-214ENST00000492357 RBM46Q8TBY0 533 aaKnown RBP11.2□□□□□ -0.62
USP54-214ENST00000492357 CCDC12Q8WUD4 166 aaPredicted RBP11.2□□□□□ -0.62
USP54-214ENST00000492357 NUP133Q8WUM0 1156 aa11.2□□□□□ -0.62
USP54-214ENST00000492357 KIAA1683Q9H0B3 1180 aa11.2□□□□□ -0.62
USP54-214ENST00000492357 ORC3Q9UBD5 711 aaPredicted RBP11.2□□□□□ -0.62
USP54-214ENST00000492357 MAD2L2Q9UI95 211 aa11.2□□□□□ -0.62
USP54-214ENST00000492357 POLR2AP24928 1970 aaKnown RBP11.19□□□□□ -0.62
USP54-214ENST00000492357 KLRF2D3W0D1 207 aa11.19□□□□□ -0.62
USP54-214ENST00000492357 GDF11O95390 407 aa11.19□□□□□ -0.62
USP54-214ENST00000492357 TRIM29Q14134 588 aa11.19□□□□□ -0.62
USP54-214ENST00000492357 ATL3Q6DD88 541 aa11.19□□□□□ -0.62
USP54-214ENST00000492357 GALNT17Q6IS24 598 aa11.19□□□□□ -0.62
USP54-214ENST00000492357 BTNL9Q6UXG8 535 aa11.19□□□□□ -0.62
USP54-214ENST00000492357 NBPF11Q86T75 865 aa11.19□□□□□ -0.62
USP54-214ENST00000492357 ANKRD13AQ8IZ07 590 aa11.19□□□□□ -0.62
USP54-214ENST00000492357 FBXO18Q8NFZ0 1043 aa11.19□□□□□ -0.62
USP54-214ENST00000492357 C12orf42Q96LP6 360 aa11.19□□□□□ -0.62
USP54-214ENST00000492357 LARP6Q9BRS8 491 aaKnown RBP11.19□□□□□ -0.62
USP54-214ENST00000492357 MAF1Q9H063 256 aa11.19□□□□□ -0.62
USP54-214ENST00000492357 RIOX1Q9H6W3 641 aa11.19□□□□□ -0.62
USP54-214ENST00000492357 VCPKMTQ9H867 229 aa11.19□□□□□ -0.62
USP54-214ENST00000492357 NCOA5Q9HCD5 579 aaKnown RBP11.19□□□□□ -0.62
USP54-214ENST00000492357 PICK1Q9NRD5 415 aa11.19□□□□□ -0.62
USP54-214ENST00000492357 MYH6P13533 1939 aa11.19□□□□□ -0.62
USP54-214ENST00000492357 CNTNAP5Q8WYK1 1306 aa11.18□□□□□ -0.62
USP54-214ENST00000492357 FAM196BA6NMK8 535 aa11.18□□□□□ -0.62
USP54-214ENST00000492357 F5H6K3 240 aa11.18□□□□□ -0.62
USP54-214ENST00000492357 WDR46O15213 610 aaKnown RBP11.18□□□□□ -0.62
USP54-214ENST00000492357 ZSCAN22P10073 491 aaPredicted RBP11.18□□□□□ -0.62
USP54-214ENST00000492357 FDPSP14324 419 aaKnown RBP11.18□□□□□ -0.62
USP54-214ENST00000492357 MAP3K9P80192 1104 aa11.18□□□□□ -0.62
USP54-214ENST00000492357 KLRC3Q07444 240 aa11.18□□□□□ -0.62
USP54-214ENST00000492357 SLFN13Q68D06 897 aa11.18□□□□□ -0.62
USP54-214ENST00000492357 PPP1R18Q6NYC8 613 aa11.18□□□□□ -0.62
USP54-214ENST00000492357 MIGA2Q7L4E1 593 aa11.18□□□□□ -0.62
USP54-214ENST00000492357 ARMC9Q7Z3E5 817 aa11.18□□□□□ -0.62
USP54-214ENST00000492357 FAM160B2Q86V87 743 aa11.18□□□□□ -0.62
USP54-214ENST00000492357 SIAH1Q8IUQ4 282 aa11.18□□□□□ -0.62
USP54-214ENST00000492357 CCDC148Q8NFR7 591 aa11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms