RNA–Protein interactions for RNA: ENST00000491791.1

USP4-214, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 821 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-214ENST00000491791 SRGNP10124 158 aa12.34□□□□□ -0.43
USP4-214ENST00000491791 CYP2D6P10635 497 aa12.34□□□□□ -0.43
USP4-214ENST00000491791 KRT2P35908 639 aa12.34□□□□□ -0.43
USP4-214ENST00000491791 SYKP43405 635 aa12.34□□□□□ -0.43
USP4-214ENST00000491791 GRM4Q14833 912 aa12.34□□□□□ -0.43
USP4-214ENST00000491791 GRIK5Q16478 980 aa12.34□□□□□ -0.43
USP4-214ENST00000491791 PFKFB3Q16875 520 aaPredicted RBP12.34□□□□□ -0.43
USP4-214ENST00000491791 GALNT17Q6IS24 598 aa12.34□□□□□ -0.43
USP4-214ENST00000491791 C16orf86Q6ZW13 317 aa12.34□□□□□ -0.43
USP4-214ENST00000491791 DHX40Q8IX18 779 aaKnown RBP12.34□□□□□ -0.43
USP4-214ENST00000491791 SRBD1Q8N5C6 995 aaKnown RBP12.34□□□□□ -0.43
USP4-214ENST00000491791 SPTLC3Q9NUV7 552 aa12.34□□□□□ -0.43
USP4-214ENST00000491791 MYO3BQ8WXR4 1341 aa12.34□□□□□ -0.43
USP4-214ENST00000491791 TSPY2A6NKD2 308 aa12.33□□□□□ -0.44
USP4-214ENST00000491791 IKBKBO14920 756 aa12.33□□□□□ -0.44
USP4-214ENST00000491791 PRDM1O75626 825 aa12.33□□□□□ -0.44
USP4-214ENST00000491791 PTMAP06454 111 aaKnown RBP12.33□□□□□ -0.44
USP4-214ENST00000491791 SCG2P13521 617 aa12.33□□□□□ -0.44
USP4-214ENST00000491791 USP5P45974 858 aa12.33□□□□□ -0.44
USP4-214ENST00000491791 FKBP1AP62942 108 aaKnown RBP12.33□□□□□ -0.44
USP4-214ENST00000491791 MDM2Q00987 491 aaPredicted RBP12.33□□□□□ -0.44
USP4-214ENST00000491791 TPRNQ4KMQ1 711 aa12.33□□□□□ -0.44
USP4-214ENST00000491791 CT47A1Q5JQC4 288 aaPredicted RBP12.33□□□□□ -0.44
USP4-214ENST00000491791 NT5DC1Q5TFE4 455 aa12.33□□□□□ -0.44
USP4-214ENST00000491791 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.33□□□□□ -0.44
USP4-214ENST00000491791 C11orf57Q6ZUT1 292 aaPredicted RBP12.33□□□□□ -0.44
USP4-214ENST00000491791 DAGLBQ8NCG7 672 aa12.33□□□□□ -0.44
USP4-214ENST00000491791 NEDD1Q8NHV4 660 aa12.33□□□□□ -0.44
USP4-214ENST00000491791 PIBF1Q8WXW3 757 aa12.33□□□□□ -0.44
USP4-214ENST00000491791 FERMT2Q96AC1 680 aa12.33□□□□□ -0.44
USP4-214ENST00000491791 BRMS1Q9HCU9 246 aa12.33□□□□□ -0.44
USP4-214ENST00000491791 KCNJ14Q9UNX9 436 aa12.33□□□□□ -0.44
USP4-214ENST00000491791 V9GY48 417 aaPredicted RBP12.33□□□□□ -0.44
USP4-214ENST00000491791 PALM3A6NDB9 673 aaPredicted RBP12.32□□□□□ -0.44
USP4-214ENST00000491791 PLEKHA8P1O95397 391 aa12.32□□□□□ -0.44
USP4-214ENST00000491791 RASA1P20936 1047 aa12.32□□□□□ -0.44
USP4-214ENST00000491791 CALML3P27482 149 aa12.32□□□□□ -0.44
USP4-214ENST00000491791 MARCKSP29966 332 aaPredicted RBP12.32□□□□□ -0.44
USP4-214ENST00000491791 BTDP43251 543 aa12.32□□□□□ -0.44
USP4-214ENST00000491791 TFAP4Q01664 338 aa12.32□□□□□ -0.44
USP4-214ENST00000491791 KIAA2012Q0VF49 1180 aa12.32□□□□□ -0.44
USP4-214ENST00000491791 DHX8Q14562 1220 aaKnown RBP12.32□□□□□ -0.44
USP4-214ENST00000491791 DIXDC1Q155Q3 683 aa12.32□□□□□ -0.44
USP4-214ENST00000491791 MFSD14BQ5SR56 506 aa12.32□□□□□ -0.44
USP4-214ENST00000491791 SOGA3Q5TF21 947 aa12.32□□□□□ -0.44
USP4-214ENST00000491791 KANK3Q6NY19 840 aa12.32□□□□□ -0.44
USP4-214ENST00000491791 KRBA2Q6ZNG9 492 aa12.32□□□□□ -0.44
USP4-214ENST00000491791 CNKSR1Q969H4 720 aa12.32□□□□□ -0.44
USP4-214ENST00000491791 FAM13BQ9NYF5 915 aa12.32□□□□□ -0.44
USP4-214ENST00000491791 HOOK1Q9UJC3 728 aaKnown RBP12.32□□□□□ -0.44
USP4-214ENST00000491791 KCNH3Q9ULD8 1083 aa12.32□□□□□ -0.44
USP4-214ENST00000491791 SNED1Q8TER0 1413 aa12.31□□□□□ -0.44
USP4-214ENST00000491791 TRIM75PA6NK02 468 aa12.31□□□□□ -0.44
USP4-214ENST00000491791 GOLGA6L19H0YKK7 550 aa12.31□□□□□ -0.44
USP4-214ENST00000491791 NFKBIEO00221 500 aa12.31□□□□□ -0.44
USP4-214ENST00000491791 C21orf2O43822 256 aa12.31□□□□□ -0.44
USP4-214ENST00000491791 NEMFO60524 1076 aa12.31□□□□□ -0.44
USP4-214ENST00000491791 SARSP49591 514 aaKnown RBP12.31□□□□□ -0.44
USP4-214ENST00000491791 EVX2Q03828 476 aa12.31□□□□□ -0.44
USP4-214ENST00000491791 GABPAQ06546 454 aa12.31□□□□□ -0.44
USP4-214ENST00000491791 NR5A1Q13285 461 aa12.31□□□□□ -0.44
USP4-214ENST00000491791 FAM47AQ5JRC9 791 aa12.31□□□□□ -0.44
USP4-214ENST00000491791 HHIPL2Q6UWX4 724 aa12.31□□□□□ -0.44
USP4-214ENST00000491791 ZNF444Q8N0Y2 327 aaPredicted RBP12.31□□□□□ -0.44
USP4-214ENST00000491791 TRIML1Q8N9V2 468 aa12.31□□□□□ -0.44
USP4-214ENST00000491791 SPATA20Q8TB22 786 aa12.31□□□□□ -0.44
USP4-214ENST00000491791 OXER1Q8TDS5 423 aa12.31□□□□□ -0.44
USP4-214ENST00000491791 TGFBRAP1Q8WUH2 860 aa12.31□□□□□ -0.44
USP4-214ENST00000491791 MASTLQ96GX5 879 aa12.31□□□□□ -0.44
USP4-214ENST00000491791 TAOK3Q9H2K8 898 aa12.31□□□□□ -0.44
USP4-214ENST00000491791 KAT14Q9H8E8 782 aa12.31□□□□□ -0.44
USP4-214ENST00000491791 FLT1P17948 1338 aa12.31□□□□□ -0.44
USP4-214ENST00000491791 SMTNL1A8MU46 457 aa12.3□□□□□ -0.44
USP4-214ENST00000491791 M0R2N6 131 aa12.3□□□□□ -0.44
USP4-214ENST00000491791 NPM3O75607 178 aaKnown RBP12.3□□□□□ -0.44
USP4-214ENST00000491791 CDK8P49336 464 aa12.3□□□□□ -0.44
USP4-214ENST00000491791 PLCD1P51178 756 aa12.3□□□□□ -0.44
USP4-214ENST00000491791 HDLBPQ00341 1268 aaKnown RBP12.3□□□□□ -0.44
USP4-214ENST00000491791 STYK1Q6J9G0 422 aa12.3□□□□□ -0.44
USP4-214ENST00000491791 TEX11Q8IYF3 940 aa12.3□□□□□ -0.44
USP4-214ENST00000491791 CMTR1Q8N1G2 835 aaKnown RBP12.3□□□□□ -0.44
USP4-214ENST00000491791 PNMA1Q8ND90 353 aa12.3□□□□□ -0.44
USP4-214ENST00000491791 KIAA1524Q8TCG1 905 aa12.3□□□□□ -0.44
USP4-214ENST00000491791 PYM1Q9BRP8 204 aaKnown RBP12.3□□□□□ -0.44
USP4-214ENST00000491791 SPZ1Q9BXG8 430 aa12.3□□□□□ -0.44
USP4-214ENST00000491791 MKNK2Q9HBH9 465 aa12.3□□□□□ -0.44
USP4-214ENST00000491791 CABP5Q9NP86 173 aa12.3□□□□□ -0.44
USP4-214ENST00000491791 VPS54Q9P1Q0 977 aa12.3□□□□□ -0.44
USP4-214ENST00000491791 ZNF219Q9P2Y4 722 aaPredicted RBP12.3□□□□□ -0.44
USP4-214ENST00000491791 MAD2L2Q9UI95 211 aa12.3□□□□□ -0.44
USP4-214ENST00000491791 PCDHB6Q9Y5E3 794 aa12.3□□□□□ -0.44
USP4-214ENST00000491791 COL11A2P13942 1736 aaPredicted RBP12.3□□□□□ -0.44
USP4-214ENST00000491791 PCNTO95613 3336 aa12.29□□□□□ -0.44
USP4-214ENST00000491791 BECN2A8MW95 431 aa12.29□□□□□ -0.44
USP4-214ENST00000491791 NMT2O60551 498 aa12.29□□□□□ -0.44
USP4-214ENST00000491791 PRELPP51888 382 aa12.29□□□□□ -0.44
USP4-214ENST00000491791 ATP2C1P98194 919 aaPredicted RBP12.29□□□□□ -0.44
USP4-214ENST00000491791 NCAPHQ15003 741 aa12.29□□□□□ -0.44
USP4-214ENST00000491791 ZRSR1Q15695 479 aaKnown RBP12.29□□□□□ -0.44
USP4-214ENST00000491791 LONRF3Q496Y0 759 aa12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms