RNA–Protein interactions for RNA: ENST00000490135.6

SYNE1-228, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 5,707 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-228ENST00000490135 KCNH5Q8NCM2 988 aa7.98□□□□□ -1.13
SYNE1-228ENST00000490135 DHX58Q96C10 678 aa7.98□□□□□ -1.13
SYNE1-228ENST00000490135 MRRFQ96E11 262 aaKnown RBP7.98□□□□□ -1.13
SYNE1-228ENST00000490135 FAM8A1Q9UBU6 413 aa7.98□□□□□ -1.13
SYNE1-228ENST00000490135 RTL1A6NKG5 1358 aa7.98□□□□□ -1.13
SYNE1-228ENST00000490135 FYCO1Q9BQS8 1478 aa7.98□□□□□ -1.13
SYNE1-228ENST00000490135 SPOPO43791 374 aa7.98□□□□□ -1.13
SYNE1-228ENST00000490135 MAN1A1P33908 653 aa7.98□□□□□ -1.13
SYNE1-228ENST00000490135 IQCB1Q15051 598 aa7.98□□□□□ -1.13
SYNE1-228ENST00000490135 HSP90AA5PQ58FG0 334 aa7.98□□□□□ -1.13
SYNE1-228ENST00000490135 PLA2G4DQ86XP0 818 aa7.98□□□□□ -1.13
SYNE1-228ENST00000490135 CHMP6Q96FZ7 201 aa7.98□□□□□ -1.13
SYNE1-228ENST00000490135 ZFATQ9P243 1243 aa7.98□□□□□ -1.13
SYNE1-228ENST00000490135 ITM2BQ9Y287 266 aa7.98□□□□□ -1.13
SYNE1-228ENST00000490135 FGD6Q6ZV73 1430 aa7.98□□□□□ -1.13
SYNE1-228ENST00000490135 SKIP12755 728 aa7.98□□□□□ -1.13
SYNE1-228ENST00000490135 RPL13P26373 211 aaKnown RBP7.98□□□□□ -1.13
SYNE1-228ENST00000490135 TMED10P49755 219 aaKnown RBP7.98□□□□□ -1.13
SYNE1-228ENST00000490135 PAK2Q13177 524 aa7.98□□□□□ -1.13
SYNE1-228ENST00000490135 MPRIPQ6WCQ1 1025 aa7.98□□□□□ -1.13
SYNE1-228ENST00000490135 FCHSD1Q86WN1 690 aa7.98□□□□□ -1.13
SYNE1-228ENST00000490135 ZNF280CQ8ND82 737 aa7.98□□□□□ -1.13
SYNE1-228ENST00000490135 RIOK1Q9BRS2 568 aaKnown RBP7.98□□□□□ -1.13
SYNE1-228ENST00000490135 XPO4Q9C0E2 1151 aaKnown RBP7.98□□□□□ -1.13
SYNE1-228ENST00000490135 UQCRFS1P1P0C7P4 283 aa7.98□□□□□ -1.13
SYNE1-228ENST00000490135 CALML3P27482 149 aa7.98□□□□□ -1.13
SYNE1-228ENST00000490135 NEK2P51955 445 aa7.98□□□□□ -1.13
SYNE1-228ENST00000490135 IRX4P78413 519 aa7.98□□□□□ -1.13
SYNE1-228ENST00000490135 NFE2L2Q16236 605 aa7.98□□□□□ -1.13
SYNE1-228ENST00000490135 CWF19L1Q69YN2 538 aaKnown RBP7.98□□□□□ -1.13
SYNE1-228ENST00000490135 SDCCAG3Q96C92 435 aa7.98□□□□□ -1.13
SYNE1-228ENST00000490135 MIS12Q9H081 205 aa7.98□□□□□ -1.13
SYNE1-228ENST00000490135 VCPKMTQ9H867 229 aa7.98□□□□□ -1.13
SYNE1-228ENST00000490135 HNRNPCL2B2RXH8 293 aa7.97□□□□□ -1.13
SYNE1-228ENST00000490135 HNRNPCL1O60812 293 aaKnown RBP7.97□□□□□ -1.13
SYNE1-228ENST00000490135 KIF11P52732 1056 aa7.97□□□□□ -1.13
SYNE1-228ENST00000490135 PHEXP78562 749 aa7.97□□□□□ -1.13
SYNE1-228ENST00000490135 RAPGEF1Q13905 1077 aa7.97□□□□□ -1.13
SYNE1-228ENST00000490135 HSP90AA4PQ58FG1 418 aa7.97□□□□□ -1.13
SYNE1-228ENST00000490135 RUFY4Q6ZNE9 571 aa7.97□□□□□ -1.13
SYNE1-228ENST00000490135 ST13P4Q8IZP2 240 aaPredicted RBP7.97□□□□□ -1.13
SYNE1-228ENST00000490135 PPP1R14BQ96C90 147 aa7.97□□□□□ -1.13
SYNE1-228ENST00000490135 NR1H4Q96RI1 486 aaPredicted RBP7.97□□□□□ -1.13
SYNE1-228ENST00000490135 KIF21AQ7Z4S6 1674 aa7.97□□□□□ -1.13
SYNE1-228ENST00000490135 PTPRGP23470 1445 aa7.97□□□□□ -1.13
SYNE1-228ENST00000490135 P4HA2O15460 535 aa7.97□□□□□ -1.13
SYNE1-228ENST00000490135 ACTN4O43707 911 aaKnown RBP7.97□□□□□ -1.13
SYNE1-228ENST00000490135 HARSP12081 509 aaKnown RBP7.97□□□□□ -1.13
SYNE1-228ENST00000490135 TRIM27P14373 513 aa7.97□□□□□ -1.13
SYNE1-228ENST00000490135 YY1P25490 414 aa7.97□□□□□ -1.13
SYNE1-228ENST00000490135 PDCLQ13371 301 aa7.97□□□□□ -1.13
SYNE1-228ENST00000490135 THEMIS2Q5TEJ8 643 aa7.97□□□□□ -1.13
SYNE1-228ENST00000490135 ANKLE2Q86XL3 938 aa7.97□□□□□ -1.13
SYNE1-228ENST00000490135 CDC23Q9UJX2 597 aa7.97□□□□□ -1.13
SYNE1-228ENST00000490135 EIF3HO15372 352 aaKnown RBP eCLIP7.97□□□□□ -1.13
SYNE1-228ENST00000490135 TBC1D8O95759 1140 aa7.97□□□□□ -1.13
SYNE1-228ENST00000490135 PDE6AP16499 860 aa7.97□□□□□ -1.13
SYNE1-228ENST00000490135 SDSP20132 328 aa7.97□□□□□ -1.13
SYNE1-228ENST00000490135 NNTQ13423 1086 aa7.97□□□□□ -1.13
SYNE1-228ENST00000490135 PICALMQ13492 652 aa7.97□□□□□ -1.13
SYNE1-228ENST00000490135 CYB5D1Q6P9G0 228 aa7.97□□□□□ -1.13
SYNE1-228ENST00000490135 GPR101Q96P66 508 aaPredicted RBP7.97□□□□□ -1.13
SYNE1-228ENST00000490135 NEK1Q96PY6 1258 aa7.97□□□□□ -1.13
SYNE1-228ENST00000490135 ITGB1BP2Q9UKP3 347 aa7.97□□□□□ -1.13
SYNE1-228ENST00000490135 SYF2O95926 243 aaKnown RBP7.97□□□□□ -1.13
SYNE1-228ENST00000490135 S100BP04271 92 aaPredicted RBP7.97□□□□□ -1.13
SYNE1-228ENST00000490135 PYGLP06737 847 aa7.97□□□□□ -1.13
SYNE1-228ENST00000490135 SMTNP53814 917 aa7.97□□□□□ -1.13
SYNE1-228ENST00000490135 APBA1Q02410 837 aa7.97□□□□□ -1.13
SYNE1-228ENST00000490135 SP4Q02446 784 aa7.97□□□□□ -1.13
SYNE1-228ENST00000490135 SNX1Q13596 522 aa7.97□□□□□ -1.13
SYNE1-228ENST00000490135 C8orf74Q6P047 294 aa7.97□□□□□ -1.13
SYNE1-228ENST00000490135 NLRP14Q86W24 1093 aa7.97□□□□□ -1.13
SYNE1-228ENST00000490135 ESR2Q92731 530 aa7.97□□□□□ -1.13
SYNE1-228ENST00000490135 RRP36Q96EU6 259 aaKnown RBP7.97□□□□□ -1.13
SYNE1-228ENST00000490135 EIF2AQ9BY44 585 aaKnown RBP7.97□□□□□ -1.13
SYNE1-228ENST00000490135 RABL2BQ9UNT1 228 aa7.97□□□□□ -1.13
SYNE1-228ENST00000490135 FHOD3Q2V2M9 1422 aa7.96□□□□□ -1.13
SYNE1-228ENST00000490135 HGSO14964 777 aaPredicted RBP7.96□□□□□ -1.13
SYNE1-228ENST00000490135 EVI5O60447 810 aa7.96□□□□□ -1.13
SYNE1-228ENST00000490135 UBXN1Q04323 297 aa7.96□□□□□ -1.13
SYNE1-228ENST00000490135 ARID5BQ14865 1188 aa7.96□□□□□ -1.13
SYNE1-228ENST00000490135 PHLDB3Q6NSJ2 640 aa7.96□□□□□ -1.13
SYNE1-228ENST00000490135 CASC4Q6P4E1 433 aa7.96□□□□□ -1.13
SYNE1-228ENST00000490135 C16orf87Q6PH81 154 aa7.96□□□□□ -1.13
SYNE1-228ENST00000490135 VSIG1Q86XK7 387 aa7.96□□□□□ -1.13
SYNE1-228ENST00000490135 CNNM2Q9H8M5 875 aa7.96□□□□□ -1.13
SYNE1-228ENST00000490135 TMA7Q9Y2S6 64 aaKnown RBP7.96□□□□□ -1.13
SYNE1-228ENST00000490135 ZNF644Q9H582 1327 aaPredicted RBP7.96□□□□□ -1.13
SYNE1-228ENST00000490135 KIAA1107Q9UPP5 1409 aa7.96□□□□□ -1.13
SYNE1-228ENST00000490135 MAP3K7O43318 606 aa7.96□□□□□ -1.13
SYNE1-228ENST00000490135 C21orf2O43822 256 aa7.96□□□□□ -1.13
SYNE1-228ENST00000490135 TADA3O75528 432 aa7.96□□□□□ -1.13
SYNE1-228ENST00000490135 EPB41P11171 864 aaKnown RBP7.96□□□□□ -1.13
SYNE1-228ENST00000490135 MAP3K7CLP57077 242 aa7.96□□□□□ -1.13
SYNE1-228ENST00000490135 RTN1Q16799 776 aa7.96□□□□□ -1.13
SYNE1-228ENST00000490135 DCAF17Q5H9S7 520 aaPredicted RBP7.96□□□□□ -1.13
SYNE1-228ENST00000490135 SERBP1Q8NC51 408 aaKnown RBP eCLIP7.96□□□□□ -1.13
SYNE1-228ENST00000490135 KCNG4Q8TDN1 519 aa7.96□□□□□ -1.13
SYNE1-228ENST00000490135 TRIM56Q9BRZ2 755 aaKnown RBP7.96□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms