RNA–Protein interactions for RNA: ENST00000489961.1

VPS13D-210, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 5

Gene VPS13D, Length 443 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-210ENST00000489961 KRT32Q14532 448 aa12.81□□□□□ -0.36
VPS13D-210ENST00000489961 TREML2Q5T2D2 321 aa12.81□□□□□ -0.36
VPS13D-210ENST00000489961 STOX1Q6ZVD7 989 aa12.81□□□□□ -0.36
VPS13D-210ENST00000489961 MKL1Q969V6 931 aa12.81□□□□□ -0.36
VPS13D-210ENST00000489961 TTC14Q96N46 770 aa12.81□□□□□ -0.36
VPS13D-210ENST00000489961 PARK7Q99497 189 aaKnown RBP12.81□□□□□ -0.36
VPS13D-210ENST00000489961 UBAC1Q9BSL1 405 aa12.81□□□□□ -0.36
VPS13D-210ENST00000489961 ZFYVE28Q9HCC9 887 aa12.81□□□□□ -0.36
VPS13D-210ENST00000489961 ZSWIM5Q9P217 1185 aa12.81□□□□□ -0.36
VPS13D-210ENST00000489961 TAF6LQ9Y6J9 622 aa12.81□□□□□ -0.36
VPS13D-210ENST00000489961 VCAM1P19320 739 aa12.8□□□□□ -0.36
VPS13D-210ENST00000489961 NOVP48745 357 aa12.8□□□□□ -0.36
VPS13D-210ENST00000489961 IRX3P78415 501 aaPredicted RBP12.8□□□□□ -0.36
VPS13D-210ENST00000489961 SART3Q15020 963 aaKnown RBP12.8□□□□□ -0.36
VPS13D-210ENST00000489961 TSGA10IPQ3SY00 556 aa12.8□□□□□ -0.36
VPS13D-210ENST00000489961 DGKHQ86XP1 1220 aa12.8□□□□□ -0.36
VPS13D-210ENST00000489961 LRRC47Q8N1G4 583 aaKnown RBP12.8□□□□□ -0.36
VPS13D-210ENST00000489961 ZSCAN10Q96SZ4 725 aaPredicted RBP12.8□□□□□ -0.36
VPS13D-210ENST00000489961 ZKSCAN3Q9BRR0 538 aa12.8□□□□□ -0.36
VPS13D-210ENST00000489961 CFHR5Q9BXR6 569 aa12.8□□□□□ -0.36
VPS13D-210ENST00000489961 USP26Q9BXU7 913 aa12.8□□□□□ -0.36
VPS13D-210ENST00000489961 ERICH2A1L162 156 aa12.79□□□□□ -0.36
VPS13D-210ENST00000489961 USP17L15C9J2P7 530 aa12.79□□□□□ -0.36
VPS13D-210ENST00000489961 USP17L13C9JLJ4 530 aa12.79□□□□□ -0.36
VPS13D-210ENST00000489961 USP17L11C9JVI0 530 aa12.79□□□□□ -0.36
VPS13D-210ENST00000489961 USP17L18D6R9N7 530 aa12.79□□□□□ -0.36
VPS13D-210ENST00000489961 USP17L22D6RA61 530 aa12.79□□□□□ -0.36
VPS13D-210ENST00000489961 USP17L17D6RBQ6 530 aa12.79□□□□□ -0.36
VPS13D-210ENST00000489961 USP17L19D6RCP7 530 aa12.79□□□□□ -0.36
VPS13D-210ENST00000489961 USP17L20D6RJB6 530 aa12.79□□□□□ -0.36
VPS13D-210ENST00000489961 F5H6K3 240 aa12.79□□□□□ -0.36
VPS13D-210ENST00000489961 WDR46O15213 610 aaKnown RBP12.79□□□□□ -0.36
VPS13D-210ENST00000489961 TBC1D8O95759 1140 aa12.79□□□□□ -0.36
VPS13D-210ENST00000489961 TOP1P11387 765 aaKnown RBP12.79□□□□□ -0.36
VPS13D-210ENST00000489961 HOXA7P31268 230 aaPredicted RBP12.79□□□□□ -0.36
VPS13D-210ENST00000489961 KLRC3Q07444 240 aa12.79□□□□□ -0.36
VPS13D-210ENST00000489961 USP17L24Q0WX57 530 aa12.79□□□□□ -0.36
VPS13D-210ENST00000489961 CRHR2Q13324 411 aa12.79□□□□□ -0.36
VPS13D-210ENST00000489961 CYB5R4Q7L1T6 521 aa12.79□□□□□ -0.36
VPS13D-210ENST00000489961 SPICE1Q8N0Z3 855 aa12.79□□□□□ -0.36
VPS13D-210ENST00000489961 GMCL1P1Q8NEA9 526 aa12.79□□□□□ -0.36
VPS13D-210ENST00000489961 NKX2-3Q8TAU0 364 aa12.79□□□□□ -0.36
VPS13D-210ENST00000489961 KCNB2Q92953 911 aa12.79□□□□□ -0.36
VPS13D-210ENST00000489961 RPAP3Q9H6T3 665 aaPredicted RBP12.79□□□□□ -0.36
VPS13D-210ENST00000489961 TNKSO95271 1327 aa12.79□□□□□ -0.36
VPS13D-210ENST00000489961 IFIT3O14879 490 aaKnown RBP12.78□□□□□ -0.36
VPS13D-210ENST00000489961 FOXN1O15353 648 aa12.78□□□□□ -0.36
VPS13D-210ENST00000489961 NDUFB10O96000 172 aa12.78□□□□□ -0.36
VPS13D-210ENST00000489961 MCM5P33992 734 aa12.78□□□□□ -0.36
VPS13D-210ENST00000489961 CTCFP49711 727 aaPredicted RBP12.78□□□□□ -0.36
VPS13D-210ENST00000489961 C8orf34Q49A92 452 aa12.78□□□□□ -0.36
VPS13D-210ENST00000489961 SLFN13Q68D06 897 aa12.78□□□□□ -0.36
VPS13D-210ENST00000489961 MB21D2Q8IYB1 491 aaPredicted RBP12.78□□□□□ -0.36
VPS13D-210ENST00000489961 RASEFQ8IZ41 740 aa12.78□□□□□ -0.36
VPS13D-210ENST00000489961 SMCR8Q8TEV9 937 aaPredicted RBP12.78□□□□□ -0.36
VPS13D-210ENST00000489961 NEK1Q96PY6 1258 aa12.78□□□□□ -0.36
VPS13D-210ENST00000489961 TMEM47Q9BQJ4 181 aa12.78□□□□□ -0.36
VPS13D-210ENST00000489961 TANGO6Q9C0B7 1094 aa12.78□□□□□ -0.36
VPS13D-210ENST00000489961 ASCC2Q9H1I8 757 aaPredicted RBP12.78□□□□□ -0.36
VPS13D-210ENST00000489961 KAT14Q9H8E8 782 aa12.78□□□□□ -0.36
VPS13D-210ENST00000489961 CEP350Q5VT06 3117 aa12.77□□□□□ -0.36
VPS13D-210ENST00000489961 PRC1O43663 620 aa12.77□□□□□ -0.37
VPS13D-210ENST00000489961 TLR2O60603 784 aa12.77□□□□□ -0.37
VPS13D-210ENST00000489961 HMGB1P09429 215 aaKnown RBP12.77□□□□□ -0.37
VPS13D-210ENST00000489961 CYP2C8P10632 490 aa12.77□□□□□ -0.37
VPS13D-210ENST00000489961 KIAA1755Q5JYT7 1200 aa12.77□□□□□ -0.37
VPS13D-210ENST00000489961 IFIT1BQ5T764 474 aaKnown RBP12.77□□□□□ -0.37
VPS13D-210ENST00000489961 RCSD1Q6JBY9 416 aa12.77□□□□□ -0.37
VPS13D-210ENST00000489961 CATSPERGQ6ZRH7 1159 aa12.77□□□□□ -0.37
VPS13D-210ENST00000489961 ENAHQ8N8S7 591 aaPredicted RBP12.77□□□□□ -0.37
VPS13D-210ENST00000489961 GTF3C2Q8WUA4 911 aaPredicted RBP12.77□□□□□ -0.37
VPS13D-210ENST00000489961 ANKS1AQ92625 1134 aa12.77□□□□□ -0.37
VPS13D-210ENST00000489961 MTA3Q9BTC8 594 aa12.77□□□□□ -0.37
VPS13D-210ENST00000489961 TSKSQ9UJT2 592 aa12.77□□□□□ -0.37
VPS13D-210ENST00000489961 ISY1Q9ULR0 285 aaKnown RBP12.77□□□□□ -0.37
VPS13D-210ENST00000489961 SNX14Q9Y5W7 946 aa12.77□□□□□ -0.37
VPS13D-210ENST00000489961 HSPA8P11142 646 aaKnown RBP12.76□□□□□ -0.37
VPS13D-210ENST00000489961 BMP3P12645 472 aa12.76□□□□□ -0.37
VPS13D-210ENST00000489961 PSMA5P28066 241 aa12.76□□□□□ -0.37
VPS13D-210ENST00000489961 SLC1A4P43007 532 aa12.76□□□□□ -0.37
VPS13D-210ENST00000489961 GCLCP48506 637 aaPredicted RBP12.76□□□□□ -0.37
VPS13D-210ENST00000489961 COG2Q14746 738 aa12.76□□□□□ -0.37
VPS13D-210ENST00000489961 WTAPQ15007 396 aa12.76□□□□□ -0.37
VPS13D-210ENST00000489961 ADCK5Q3MIX3 580 aa12.76□□□□□ -0.37
VPS13D-210ENST00000489961 NOM1Q5C9Z4 860 aaKnown RBP12.76□□□□□ -0.37
VPS13D-210ENST00000489961 TMEM67Q5HYA8 995 aa12.76□□□□□ -0.37
VPS13D-210ENST00000489961 FAM83BQ5T0W9 1011 aa12.76□□□□□ -0.37
VPS13D-210ENST00000489961 CHST3Q7LGC8 479 aa12.76□□□□□ -0.37
VPS13D-210ENST00000489961 DCAF4Q8WV16 495 aa12.76□□□□□ -0.37
VPS13D-210ENST00000489961 GMCL1Q96IK5 515 aa12.76□□□□□ -0.37
VPS13D-210ENST00000489961 TMEM87BQ96K49 555 aa12.76□□□□□ -0.37
VPS13D-210ENST00000489961 JAKMIP1Q96N16 626 aaKnown RBP12.76□□□□□ -0.37
VPS13D-210ENST00000489961 MTMR7Q9Y216 660 aa12.76□□□□□ -0.37
VPS13D-210ENST00000489961 GPR25O00155 361 aa12.75□□□□□ -0.37
VPS13D-210ENST00000489961 FLOT1O75955 427 aa12.75□□□□□ -0.37
VPS13D-210ENST00000489961 SEC24BO95487 1268 aa12.75□□□□□ -0.37
VPS13D-210ENST00000489961 ANTXR2P58335 489 aa12.75□□□□□ -0.37
VPS13D-210ENST00000489961 HERVK_113P62684 666 aa12.75□□□□□ -0.37
VPS13D-210ENST00000489961 SEC23AQ15436 765 aa12.75□□□□□ -0.37
VPS13D-210ENST00000489961 CCDC96Q2M329 555 aa12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms