RNA–Protein interactions for RNA: ENST00000489892.1

TRIM40-208, Transcript of tripartite motif containing 40, humanhuman

TSL 3

Gene TRIM40, Length 941 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM40-208ENST00000489892 ZFPM1Q8IX07 1006 aa13.55□□□□□ -0.24
TRIM40-208ENST00000489892 ZC3H15Q8WU90 426 aaKnown RBP13.55□□□□□ -0.24
TRIM40-208ENST00000489892 CEP95Q96GE4 821 aa13.55□□□□□ -0.24
TRIM40-208ENST00000489892 SH2D4AQ9H788 454 aa13.55□□□□□ -0.24
TRIM40-208ENST00000489892 ABT1Q9ULW3 272 aaKnown RBP13.55□□□□□ -0.24
TRIM40-208ENST00000489892 PDE4DIPQ5VU43 2346 aa13.55□□□□□ -0.24
TRIM40-208ENST00000489892 IGKV6D-41A0A0C4DH26 115 aa13.54□□□□□ -0.24
TRIM40-208ENST00000489892 H3BQV1 296 aa13.54□□□□□ -0.24
TRIM40-208ENST00000489892 STX6O43752 255 aa13.54□□□□□ -0.24
TRIM40-208ENST00000489892 BAG4O95429 457 aaKnown RBP13.54□□□□□ -0.24
TRIM40-208ENST00000489892 AKR1B1P15121 316 aa13.54□□□□□ -0.24
TRIM40-208ENST00000489892 XBP1P17861 261 aa13.54□□□□□ -0.24
TRIM40-208ENST00000489892 MAP3K10Q02779 954 aa13.54□□□□□ -0.24
TRIM40-208ENST00000489892 EVX2Q03828 476 aa13.54□□□□□ -0.24
TRIM40-208ENST00000489892 SSRP1Q08945 709 aaKnown RBP13.54□□□□□ -0.24
TRIM40-208ENST00000489892 ST3GAL1Q11201 340 aa13.54□□□□□ -0.24
TRIM40-208ENST00000489892 TROAPQ12815 778 aa13.54□□□□□ -0.24
TRIM40-208ENST00000489892 TRIM29Q14134 588 aa13.54□□□□□ -0.24
TRIM40-208ENST00000489892 SUPT20HL1Q3ZLR7 823 aa13.54□□□□□ -0.24
TRIM40-208ENST00000489892 RCSD1Q6JBY9 416 aa13.54□□□□□ -0.24
TRIM40-208ENST00000489892 FAM177A1Q8N128 213 aaPredicted RBP13.54□□□□□ -0.24
TRIM40-208ENST00000489892 DCPSQ96C86 337 aaKnown RBP13.54□□□□□ -0.24
TRIM40-208ENST00000489892 TMEM47Q9BQJ4 181 aa13.54□□□□□ -0.24
TRIM40-208ENST00000489892 RNF26Q9BY78 433 aaPredicted RBP13.54□□□□□ -0.24
TRIM40-208ENST00000489892 TMEM39BQ9GZU3 492 aa13.54□□□□□ -0.24
TRIM40-208ENST00000489892 DEFB129Q9H1M3 183 aa13.54□□□□□ -0.24
TRIM40-208ENST00000489892 IL17RBQ9NRM6 502 aa13.54□□□□□ -0.24
TRIM40-208ENST00000489892 WBP1LQ9NX94 342 aa13.54□□□□□ -0.24
TRIM40-208ENST00000489892 NYAP2Q9P242 653 aa13.54□□□□□ -0.24
TRIM40-208ENST00000489892 MYH15Q9Y2K3 1946 aa13.54□□□□□ -0.24
TRIM40-208ENST00000489892 NMT2O60551 498 aa13.53□□□□□ -0.24
TRIM40-208ENST00000489892 ASNSP08243 561 aa13.53□□□□□ -0.24
TRIM40-208ENST00000489892 SYT1P21579 422 aa13.53□□□□□ -0.24
TRIM40-208ENST00000489892 SMARCA1P28370 1054 aa13.53□□□□□ -0.24
TRIM40-208ENST00000489892 EPS15P42566 896 aa13.53□□□□□ -0.24
TRIM40-208ENST00000489892 DEFB115Q30KQ5 88 aa13.53□□□□□ -0.24
TRIM40-208ENST00000489892 ASPRV1Q53RT3 343 aa13.53□□□□□ -0.24
TRIM40-208ENST00000489892 ANGEL2Q5VTE6 544 aaKnown RBP13.53□□□□□ -0.24
TRIM40-208ENST00000489892 SULF1Q8IWU6 871 aa13.53□□□□□ -0.24
TRIM40-208ENST00000489892 DNAJC18Q9H819 358 aa13.53□□□□□ -0.24
TRIM40-208ENST00000489892 GRPEL1Q9HAV7 217 aa13.53□□□□□ -0.24
TRIM40-208ENST00000489892 NCOA5Q9HCD5 579 aaKnown RBP13.53□□□□□ -0.24
TRIM40-208ENST00000489892 ARHGEF10LQ9HCE6 1279 aa13.53□□□□□ -0.24
TRIM40-208ENST00000489892 GGA3Q9NZ52 723 aa13.53□□□□□ -0.24
TRIM40-208ENST00000489892 ORC3Q9UBD5 711 aaPredicted RBP13.53□□□□□ -0.24
TRIM40-208ENST00000489892 SIPA1L1O43166 1804 aa13.53□□□□□ -0.24
TRIM40-208ENST00000489892 GREB1LQ9C091 1923 aaPredicted RBP13.52□□□□□ -0.24
TRIM40-208ENST00000489892 SHTN1A0MZ66 631 aa13.52□□□□□ -0.25
TRIM40-208ENST00000489892 DEXIO95424 95 aa13.52□□□□□ -0.25
TRIM40-208ENST00000489892 FMNL1O95466 1100 aaPredicted RBP13.52□□□□□ -0.25
TRIM40-208ENST00000489892 BRD1O95696 1058 aa13.52□□□□□ -0.25
TRIM40-208ENST00000489892 PARP1P09874 1014 aaKnown RBP13.52□□□□□ -0.25
TRIM40-208ENST00000489892 ZSCAN22P10073 491 aaPredicted RBP13.52□□□□□ -0.25
TRIM40-208ENST00000489892 ICA1Q05084 483 aa13.52□□□□□ -0.25
TRIM40-208ENST00000489892 GRM4Q14833 912 aa13.52□□□□□ -0.25
TRIM40-208ENST00000489892 GPATCH4Q5T3I0 446 aaKnown RBP13.52□□□□□ -0.25
TRIM40-208ENST00000489892 PAXIP1Q6ZW49 1069 aaPredicted RBP13.52□□□□□ -0.25
TRIM40-208ENST00000489892 TRPM4Q8TD43 1214 aa13.52□□□□□ -0.25
TRIM40-208ENST00000489892 ZNF341Q9BYN7 854 aa13.52□□□□□ -0.25
TRIM40-208ENST00000489892 SENP2Q9HC62 589 aa13.52□□□□□ -0.25
TRIM40-208ENST00000489892 TRPM7Q96QT4 1865 aa13.52□□□□□ -0.25
TRIM40-208ENST00000489892 VPS37CA5D8V6 355 aaPredicted RBP13.51□□□□□ -0.25
TRIM40-208ENST00000489892 RASSF10A6NK89 507 aa13.51□□□□□ -0.25
TRIM40-208ENST00000489892 JAK2O60674 1132 aa13.51□□□□□ -0.25
TRIM40-208ENST00000489892 CTDNEP1O95476 244 aa13.51□□□□□ -0.25
TRIM40-208ENST00000489892 MBD3O95983 291 aa13.51□□□□□ -0.25
TRIM40-208ENST00000489892 EGFRP00533 1210 aa13.51□□□□□ -0.25
TRIM40-208ENST00000489892 NF2P35240 595 aa13.51□□□□□ -0.25
TRIM40-208ENST00000489892 TMTC3Q6ZXV5 915 aa13.51□□□□□ -0.25
TRIM40-208ENST00000489892 NKX2-3Q8TAU0 364 aa13.51□□□□□ -0.25
TRIM40-208ENST00000489892 MKL1Q969V6 931 aa13.51□□□□□ -0.25
TRIM40-208ENST00000489892 DDX11Q96FC9 970 aa13.51□□□□□ -0.25
TRIM40-208ENST00000489892 C8orf76Q96K31 380 aa13.51□□□□□ -0.25
TRIM40-208ENST00000489892 MYL10Q9BUA6 226 aa13.51□□□□□ -0.25
TRIM40-208ENST00000489892 ZSCAN16Q9H4T2 348 aaPredicted RBP13.51□□□□□ -0.25
TRIM40-208ENST00000489892 CLIP2Q9UDT6 1046 aa13.51□□□□□ -0.25
TRIM40-208ENST00000489892 CTNND1O60716 968 aaKnown RBP13.5□□□□□ -0.25
TRIM40-208ENST00000489892 GH2P01242 217 aa13.5□□□□□ -0.25
TRIM40-208ENST00000489892 RXRAP19793 462 aa13.5□□□□□ -0.25
TRIM40-208ENST00000489892 CDC27P30260 824 aa13.5□□□□□ -0.25
TRIM40-208ENST00000489892 ADD1P35611 737 aaKnown RBP13.5□□□□□ -0.25
TRIM40-208ENST00000489892 CAP2P40123 477 aa13.5□□□□□ -0.25
TRIM40-208ENST00000489892 MAP2K1Q02750 393 aaPredicted RBP13.5□□□□□ -0.25
TRIM40-208ENST00000489892 SAFBQ15424 915 aaKnown RBP eCLIP13.5□□□□□ -0.25
TRIM40-208ENST00000489892 NTRK3Q16288 839 aa13.5□□□□□ -0.25
TRIM40-208ENST00000489892 CSPP1Q1MSJ5 1256 aa13.5□□□□□ -0.25
TRIM40-208ENST00000489892 PRPF38BQ5VTL8 546 aaKnown RBP13.5□□□□□ -0.25
TRIM40-208ENST00000489892 USP48Q86UV5 1035 aa13.5□□□□□ -0.25
TRIM40-208ENST00000489892 CCDC144CPQ8IYA2 1237 aa13.5□□□□□ -0.25
TRIM40-208ENST00000489892 GMCL1P1Q8NEA9 526 aa13.5□□□□□ -0.25
TRIM40-208ENST00000489892 DCAF4Q8WV16 495 aa13.5□□□□□ -0.25
TRIM40-208ENST00000489892 TEPSINQ96N21 525 aa13.5□□□□□ -0.25
TRIM40-208ENST00000489892 GNL3Q9BVP2 549 aaKnown RBP eCLIP13.5□□□□□ -0.25
TRIM40-208ENST00000489892 SLC26A6Q9BXS9 759 aa13.5□□□□□ -0.25
TRIM40-208ENST00000489892 GOPCQ9HD26 462 aa13.5□□□□□ -0.25
TRIM40-208ENST00000489892 FAM217BQ9NTX9 383 aaPredicted RBP13.5□□□□□ -0.25
TRIM40-208ENST00000489892 PGAP2Q9UHJ9 254 aa13.5□□□□□ -0.25
TRIM40-208ENST00000489892 ZBTB21Q9ULJ3 1066 aa13.5□□□□□ -0.25
TRIM40-208ENST00000489892 PRPF3O43395 683 aaKnown RBP13.49□□□□□ -0.25
TRIM40-208ENST00000489892 XRCC6P12956 609 aaKnown RBP eCLIP13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms