RNA–Protein interactions for RNA: ENST00000489443.2

LMX1A-204, Transcript of LIM homeobox transcription factor 1 alpha, humanhuman

TSL 1 (best)

Gene LMX1A, Length 1,255 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1A-204ENST00000489443 TOMM22Q9NS69 142 aa18.69■□□□□ 0.58
LMX1A-204ENST00000489443 DDX52Q9Y2R4 599 aaKnown RBP eCLIP18.69■□□□□ 0.58
LMX1A-204ENST00000489443 ZMYM6O95789 1325 aa18.69■□□□□ 0.58
LMX1A-204ENST00000489443 MGAMO43451 1857 aa18.69■□□□□ 0.58
LMX1A-204ENST00000489443 RANBP6O60518 1105 aaKnown RBP18.68■□□□□ 0.58
LMX1A-204ENST00000489443 PEX10O60683 326 aa18.68■□□□□ 0.58
LMX1A-204ENST00000489443 FCGRTP55899 365 aa18.68■□□□□ 0.58
LMX1A-204ENST00000489443 FAM110CQ1W6H9 321 aa18.68■□□□□ 0.58
LMX1A-204ENST00000489443 RRP12Q5JTH9 1297 aaKnown RBP18.68■□□□□ 0.58
LMX1A-204ENST00000489443 NEDD1Q8NHV4 660 aa18.68■□□□□ 0.58
LMX1A-204ENST00000489443 LPAR1Q92633 364 aa18.68■□□□□ 0.58
LMX1A-204ENST00000489443 CEP95Q96GE4 821 aa18.68■□□□□ 0.58
LMX1A-204ENST00000489443 PAGR1Q9BTK6 254 aa18.68■□□□□ 0.58
LMX1A-204ENST00000489443 IL25Q9H293 177 aa18.68■□□□□ 0.58
LMX1A-204ENST00000489443 GOPCQ9HD26 462 aa18.68■□□□□ 0.58
LMX1A-204ENST00000489443 NYAP2Q9P242 653 aa18.68■□□□□ 0.58
LMX1A-204ENST00000489443 CLIP2Q9UDT6 1046 aa18.68■□□□□ 0.58
LMX1A-204ENST00000489443 TACC3Q9Y6A5 838 aa18.68■□□□□ 0.58
LMX1A-204ENST00000489443 CENPFP49454 3210 aa18.68■□□□□ 0.58
LMX1A-204ENST00000489443 MYH4Q9Y623 1939 aa18.67■□□□□ 0.58
LMX1A-204ENST00000489443 IGKV6D-41A0A0C4DH26 115 aa18.67■□□□□ 0.58
LMX1A-204ENST00000489443 TSPY2A6NKD2 308 aa18.67■□□□□ 0.58
LMX1A-204ENST00000489443 GNRH1P01148 92 aa18.67■□□□□ 0.58
LMX1A-204ENST00000489443 HOXD10P28358 340 aa18.67■□□□□ 0.58
LMX1A-204ENST00000489443 MTMR4Q9NYA4 1195 aa18.67■□□□□ 0.58
LMX1A-204ENST00000489443 RBPJLQ9UBG7 517 aa18.67■□□□□ 0.58
LMX1A-204ENST00000489443 DOCK3Q8IZD9 2030 aa18.66■□□□□ 0.58
LMX1A-204ENST00000489443 ZNF213O14771 459 aa18.66■□□□□ 0.58
LMX1A-204ENST00000489443 TNPO2O14787 897 aaKnown RBP18.66■□□□□ 0.58
LMX1A-204ENST00000489443 ORC4O43929 436 aa18.66■□□□□ 0.58
LMX1A-204ENST00000489443 SAMD1Q6SPF0 538 aaPredicted RBP18.66■□□□□ 0.58
LMX1A-204ENST00000489443 GPRC5AQ8NFJ5 357 aa18.66■□□□□ 0.58
LMX1A-204ENST00000489443 DSCC1Q9BVC3 393 aa18.66■□□□□ 0.58
LMX1A-204ENST00000489443 TXNRD2Q9NNW7 524 aa18.66■□□□□ 0.58
LMX1A-204ENST00000489443 MORF4L1Q9UBU8 362 aa18.66■□□□□ 0.58
LMX1A-204ENST00000489443 PTCH2Q9Y6C5 1203 aa18.66■□□□□ 0.58
LMX1A-204ENST00000489443 TTLL1O95922 423 aa18.65■□□□□ 0.58
LMX1A-204ENST00000489443 COG2Q14746 738 aa18.65■□□□□ 0.58
LMX1A-204ENST00000489443 AKNAD1Q5T1N1 836 aa18.65■□□□□ 0.58
LMX1A-204ENST00000489443 POTEEQ6S8J3 1075 aa18.65■□□□□ 0.58
LMX1A-204ENST00000489443 MFSD6Q6ZSS7 791 aa18.65■□□□□ 0.58
LMX1A-204ENST00000489443 GTF3C2Q8WUA4 911 aaPredicted RBP18.65■□□□□ 0.58
LMX1A-204ENST00000489443 NBPF3Q9H094 633 aa18.65■□□□□ 0.58
LMX1A-204ENST00000489443 SRRDQ9UH36 339 aa18.65■□□□□ 0.58
LMX1A-204ENST00000489443 CTNNA3Q9UI47 895 aa18.65■□□□□ 0.58
LMX1A-204ENST00000489443 RAD50Q92878 1312 aa18.65■□□□□ 0.58
LMX1A-204ENST00000489443 PLIN4Q96Q06 1357 aa18.65■□□□□ 0.58
LMX1A-204ENST00000489443 WDR46O15213 610 aaKnown RBP18.64■□□□□ 0.57
LMX1A-204ENST00000489443 FLOT1O75955 427 aa18.64■□□□□ 0.57
LMX1A-204ENST00000489443 FGRP09769 529 aa18.64■□□□□ 0.57
LMX1A-204ENST00000489443 ERVK-9P63128 1117 aa18.64■□□□□ 0.57
LMX1A-204ENST00000489443 ERVK-24P63145 666 aa18.64■□□□□ 0.57
LMX1A-204ENST00000489443 TBC1D10CQ8IV04 446 aa18.64■□□□□ 0.57
LMX1A-204ENST00000489443 HOXC10Q9NYD6 342 aa18.64■□□□□ 0.57
LMX1A-204ENST00000489443 RABGAP1Q9Y3P9 1069 aa18.64■□□□□ 0.57
LMX1A-204ENST00000489443 MYPNQ86TC9 1320 aa18.64■□□□□ 0.57
LMX1A-204ENST00000489443 SPDYE16A6NNV3 312 aaPredicted RBP18.63■□□□□ 0.57
LMX1A-204ENST00000489443 F5H6K3 240 aa18.63■□□□□ 0.57
LMX1A-204ENST00000489443 NMT2O60551 498 aa18.63■□□□□ 0.57
LMX1A-204ENST00000489443 PRMT2P55345 433 aa18.63■□□□□ 0.57
LMX1A-204ENST00000489443 PRKCZQ05513 592 aa18.63■□□□□ 0.57
LMX1A-204ENST00000489443 KLRC3Q07444 240 aa18.63■□□□□ 0.57
LMX1A-204ENST00000489443 IMMTQ16891 758 aaKnown RBP18.63■□□□□ 0.57
LMX1A-204ENST00000489443 Q3C1V9 767 aa18.63■□□□□ 0.57
LMX1A-204ENST00000489443 FAM83BQ5T0W9 1011 aa18.63■□□□□ 0.57
LMX1A-204ENST00000489443 CCAR1Q8IX12 1150 aaKnown RBP18.63■□□□□ 0.57
LMX1A-204ENST00000489443 LRRC47Q8N1G4 583 aaKnown RBP18.63■□□□□ 0.57
LMX1A-204ENST00000489443 MKL1Q969V6 931 aa18.63■□□□□ 0.57
LMX1A-204ENST00000489443 COA7Q96BR5 231 aa18.63■□□□□ 0.57
LMX1A-204ENST00000489443 NUP88Q99567 741 aaPredicted RBP18.63■□□□□ 0.57
LMX1A-204ENST00000489443 RNF41Q9H4P4 317 aaPredicted RBP18.63■□□□□ 0.57
LMX1A-204ENST00000489443 PPP4R2Q9NY27 417 aa18.63■□□□□ 0.57
LMX1A-204ENST00000489443 GABRQQ9UN88 632 aa18.63■□□□□ 0.57
LMX1A-204ENST00000489443 STX8Q9UNK0 236 aa18.63■□□□□ 0.57
LMX1A-204ENST00000489443 SGSM2O43147 1006 aa18.62■□□□□ 0.57
LMX1A-204ENST00000489443 NDUFB10O96000 172 aa18.62■□□□□ 0.57
LMX1A-204ENST00000489443 PTH1RQ03431 593 aa18.62■□□□□ 0.57
LMX1A-204ENST00000489443 SLC9C1Q4G0N8 1177 aa18.62■□□□□ 0.57
LMX1A-204ENST00000489443 BMP2KLQ5H9B9 411 aa18.62■□□□□ 0.57
LMX1A-204ENST00000489443 ERICH6BQ5W0A0 696 aa18.62■□□□□ 0.57
LMX1A-204ENST00000489443 RAET1EQ8TD07 263 aa18.62■□□□□ 0.57
LMX1A-204ENST00000489443 STAG1Q8WVM7 1258 aa18.62■□□□□ 0.57
LMX1A-204ENST00000489443 IL17RBQ9NRM6 502 aa18.62■□□□□ 0.57
LMX1A-204ENST00000489443 LAMA4Q16363 1823 aa18.62■□□□□ 0.57
LMX1A-204ENST00000489443 RLFQ13129 1914 aa18.61■□□□□ 0.57
LMX1A-204ENST00000489443 CNMDO75829 334 aa18.61■□□□□ 0.57
LMX1A-204ENST00000489443 PCP11498 1178 aaKnown RBP18.61■□□□□ 0.57
LMX1A-204ENST00000489443 DSG3P32926 999 aa18.61■□□□□ 0.57
LMX1A-204ENST00000489443 PPP4R3BQ5MIZ7 849 aa18.61■□□□□ 0.57
LMX1A-204ENST00000489443 LBX2Q6XYB7 198 aa18.61■□□□□ 0.57
LMX1A-204ENST00000489443 CHMP4CQ96CF2 233 aa18.61■□□□□ 0.57
LMX1A-204ENST00000489443 FBXO28Q9NVF7 368 aa18.61■□□□□ 0.57
LMX1A-204ENST00000489443 BTBD7Q9P203 1132 aa18.61■□□□□ 0.57
LMX1A-204ENST00000489443 NEDD4P46934 1319 aa18.6■□□□□ 0.57
LMX1A-204ENST00000489443 FLT3LGP49771 235 aa18.6■□□□□ 0.57
LMX1A-204ENST00000489443 CCNA1P78396 465 aa18.6■□□□□ 0.57
LMX1A-204ENST00000489443 SLFN13Q68D06 897 aa18.6■□□□□ 0.57
LMX1A-204ENST00000489443 NBPF11Q86T75 865 aa18.6■□□□□ 0.57
LMX1A-204ENST00000489443 SH3TC2Q8TF17 1288 aa18.6■□□□□ 0.57
LMX1A-204ENST00000489443 ATG4CQ96DT6 458 aa18.6■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 68.7 ms