RNA–Protein interactions for RNA: ENST00000489045.5

COL9A3-213, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 838 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-213ENST00000489045 UBE2Q1Q7Z7E8 422 aa27.57■■■□□ 2
COL9A3-213ENST00000489045 XRN2Q9H0D6 950 aaKnown RBP eCLIP27.57■■■□□ 22e-9■■□□□ 14.1
COL9A3-213ENST00000489045 SH2D4AQ9H788 454 aa27.57■■■□□ 2
COL9A3-213ENST00000489045 CWC22Q9HCG8 908 aaKnown RBP27.57■■■□□ 2
COL9A3-213ENST00000489045 BTBD7Q9P203 1132 aa27.57■■■□□ 2
COL9A3-213ENST00000489045 ZBTB47Q9UFB7 747 aaPredicted RBP27.57■■■□□ 2
COL9A3-213ENST00000489045 TMX2Q9Y320 296 aa27.57■■■□□ 2
COL9A3-213ENST00000489045 SALL3Q9BXA9 1300 aa27.57■■■□□ 2
COL9A3-213ENST00000489045 HDAC1Q13547 482 aaPredicted RBP27.56■■■□□ 2
COL9A3-213ENST00000489045 USP6NLQ92738 828 aa27.56■■■□□ 2
COL9A3-213ENST00000489045 FSD1Q9BTV5 496 aa27.56■■■□□ 2
COL9A3-213ENST00000489045 EPB41L4AQ9HCS5 686 aaPredicted RBP27.56■■■□□ 2
COL9A3-213ENST00000489045 ROBO3Q96MS0 1386 aa27.56■■■□□ 2
COL9A3-213ENST00000489045 FARP2O94887 1054 aaPredicted RBP27.55■■■□□ 2
COL9A3-213ENST00000489045 XRCC5P13010 732 aaKnown RBP27.55■■■□□ 2
COL9A3-213ENST00000489045 GNAT2P19087 354 aa27.55■■■□□ 2
COL9A3-213ENST00000489045 COG2Q14746 738 aa27.55■■■□□ 2
COL9A3-213ENST00000489045 MORN1Q5T089 497 aa27.55■■■□□ 2
COL9A3-213ENST00000489045 LPAR1Q92633 364 aa27.55■■■□□ 2
COL9A3-213ENST00000489045 GCC1Q96CN9 775 aa27.55■■■□□ 2
COL9A3-213ENST00000489045 VCPKMTQ9H867 229 aa27.55■■■□□ 2
COL9A3-213ENST00000489045 MINDY4BA8MYZ0 360 aa27.54■■■□□ 2
COL9A3-213ENST00000489045 TFRCP02786 760 aaKnown RBP27.54■■■□□ 2
COL9A3-213ENST00000489045 RGS2P41220 211 aa27.54■■■□□ 2
COL9A3-213ENST00000489045 SPICE1Q8N0Z3 855 aa27.54■■■□□ 2
COL9A3-213ENST00000489045 STK11IPQ8N1F8 1099 aa27.54■■■□□ 2
COL9A3-213ENST00000489045 SEC62Q99442 399 aaKnown RBP27.54■■■□□ 2
COL9A3-213ENST00000489045 COL11A1P12107 1806 aaPredicted RBP27.53■■■□□ 2
COL9A3-213ENST00000489045 RPTORQ8N122 1335 aa27.53■■■□□ 2
COL9A3-213ENST00000489045 EEF2P13639 858 aaKnown RBP27.53■■■□□ 2
COL9A3-213ENST00000489045 TDO2P48775 406 aa27.53■■■□□ 2
COL9A3-213ENST00000489045 ATP2B2Q01814 1243 aa27.53■■■□□ 2
COL9A3-213ENST00000489045 WDR78Q5VTH9 848 aa27.53■■■□□ 2
COL9A3-213ENST00000489045 CRISPLD2Q9H0B8 497 aa27.53■■■□□ 2
COL9A3-213ENST00000489045 KANSL2Q9H9L4 492 aa27.53■■■□□ 2
COL9A3-213ENST00000489045 HOXC10Q9NYD6 342 aa27.53■■■□□ 2
COL9A3-213ENST00000489045 MYH4Q9Y623 1939 aa27.52■■■□□ 2
COL9A3-213ENST00000489045 APPP05067 770 aa27.52■■■□□ 2
COL9A3-213ENST00000489045 ZKSCAN1P17029 563 aaPredicted RBP27.52■■■□□ 2
COL9A3-213ENST00000489045 APBA2Q99767 749 aa27.52■■■□□ 2
COL9A3-213ENST00000489045 HMX1Q9NP08 348 aaPredicted RBP27.52■■■□□ 2
COL9A3-213ENST00000489045 RASA1P20936 1047 aa27.51■■□□□ 1.99
COL9A3-213ENST00000489045 CCL14Q16627 93 aa27.51■■□□□ 1.99
COL9A3-213ENST00000489045 TRMT44Q8IYL2 757 aaKnown RBP27.51■■□□□ 1.99
COL9A3-213ENST00000489045 GNL3Q9BVP2 549 aaKnown RBP eCLIP27.51■■□□□ 1.99
COL9A3-213ENST00000489045 ZNF236Q9UL36 1845 aa27.51■■□□□ 1.99
COL9A3-213ENST00000489045 PATL2C9JE40 543 aaKnown RBP27.5■■□□□ 1.99
COL9A3-213ENST00000489045 WDR46O15213 610 aaKnown RBP27.5■■□□□ 1.99
COL9A3-213ENST00000489045 FLOT1O75955 427 aa27.5■■□□□ 1.99
COL9A3-213ENST00000489045 SLC34A2O95436 690 aa27.5■■□□□ 1.99
COL9A3-213ENST00000489045 PRKAR2AP13861 404 aaKnown RBP27.5■■□□□ 1.99
COL9A3-213ENST00000489045 CAPN2P17655 700 aa27.5■■□□□ 1.99
COL9A3-213ENST00000489045 MAP2K5Q13163 448 aa27.5■■□□□ 1.99
COL9A3-213ENST00000489045 ZMYM1Q5SVZ6 1142 aa27.5■■□□□ 1.99
COL9A3-213ENST00000489045 MAP3K21Q5TCX8 1036 aa27.5■■□□□ 1.99
COL9A3-213ENST00000489045 IFNL3Q8IZI9 196 aa27.5■■□□□ 1.99
COL9A3-213ENST00000489045 MKNK2Q9HBH9 465 aa27.5■■□□□ 1.99
COL9A3-213ENST00000489045 SLC15A5A6NIM6 579 aa27.49■■□□□ 1.99
COL9A3-213ENST00000489045 PTPREP23469 700 aa27.49■■□□□ 1.99
COL9A3-213ENST00000489045 DSG3P32926 999 aa27.49■■□□□ 1.99
COL9A3-213ENST00000489045 AAMPQ13685 434 aa27.49■■□□□ 1.99
COL9A3-213ENST00000489045 DPF3Q92784 378 aa27.49■■□□□ 1.99
COL9A3-213ENST00000489045 HTATIP2Q9BUP3 242 aa27.49■■□□□ 1.99
COL9A3-213ENST00000489045 IVNS1ABPQ9Y6Y0 642 aa27.49■■□□□ 1.99
COL9A3-213ENST00000489045 FRMPD3Q5JV73 1810 aa27.48■■□□□ 1.99
COL9A3-213ENST00000489045 ALPK3Q96L96 1907 aa27.48■■□□□ 1.99
COL9A3-213ENST00000489045 ATG4CQ96DT6 458 aa27.48■■□□□ 1.99
COL9A3-213ENST00000489045 MOV10L1Q9BXT6 1211 aaKnown RBP27.48■■□□□ 1.99
COL9A3-213ENST00000489045 STAP2Q9UGK3 403 aa27.48■■□□□ 1.99
COL9A3-213ENST00000489045 PDE1AP54750 535 aa27.47■■□□□ 1.99
COL9A3-213ENST00000489045 CACNB2Q08289 660 aaPredicted RBP27.47■■□□□ 1.99
COL9A3-213ENST00000489045 GRB14Q14449 540 aa27.47■■□□□ 1.99
COL9A3-213ENST00000489045 SAMD1Q6SPF0 538 aaPredicted RBP27.47■■□□□ 1.99
COL9A3-213ENST00000489045 MB21D1Q8N884 522 aa27.47■■□□□ 1.99
COL9A3-213ENST00000489045 NACAP1Q9BZK3 213 aa27.47■■□□□ 1.99
COL9A3-213ENST00000489045 SPATC1LQ9H0A9 340 aa27.47■■□□□ 1.99
COL9A3-213ENST00000489045 GOPCQ9HD26 462 aa27.47■■□□□ 1.99
COL9A3-213ENST00000489045 H0YGN5 161 aa27.46■■□□□ 1.99
COL9A3-213ENST00000489045 RAD21O60216 631 aa27.46■■□□□ 1.99
COL9A3-213ENST00000489045 PRDM1O75626 825 aa27.45■■□□□ 1.98
COL9A3-213ENST00000489045 NAPBQ9H115 298 aa27.45■■□□□ 1.98
COL9A3-213ENST00000489045 ZNF287Q9HBT7 754 aa27.45■■□□□ 1.98
COL9A3-213ENST00000489045 PLS1Q14651 629 aa27.44■■□□□ 1.98
COL9A3-213ENST00000489045 CCDC129Q6ZRS4 1044 aa27.44■■□□□ 1.98
COL9A3-213ENST00000489045 ANKLE1Q8NAG6 615 aa27.44■■□□□ 1.98
COL9A3-213ENST00000489045 SHCBP1Q8NEM2 672 aa27.44■■□□□ 1.98
COL9A3-213ENST00000489045 DIS3LQ8TF46 1054 aaKnown RBP27.44■■□□□ 1.98
COL9A3-213ENST00000489045 EVI5LQ96CN4 794 aa27.44■■□□□ 1.98
COL9A3-213ENST00000489045 PAWRQ96IZ0 340 aaKnown RBP27.44■■□□□ 1.98
COL9A3-213ENST00000489045 LNPKQ9C0E8 428 aa27.44■■□□□ 1.98
COL9A3-213ENST00000489045 FBXO28Q9NVF7 368 aa27.44■■□□□ 1.98
COL9A3-213ENST00000489045 FLRT1Q9NZU1 646 aa27.44■■□□□ 1.98
COL9A3-213ENST00000489045 NYAP2Q9P242 653 aa27.44■■□□□ 1.98
COL9A3-213ENST00000489045 ZNFX1Q9P2E3 1918 aaKnown RBP27.43■■□□□ 1.98
COL9A3-213ENST00000489045 ERCC3P19447 782 aa27.43■■□□□ 1.98
COL9A3-213ENST00000489045 CCND3P30281 292 aaPredicted RBP27.43■■□□□ 1.98
COL9A3-213ENST00000489045 FAM83BQ5T0W9 1011 aa27.43■■□□□ 1.98
COL9A3-213ENST00000489045 ZNF444Q8N0Y2 327 aaPredicted RBP27.43■■□□□ 1.98
COL9A3-213ENST00000489045 EXOC6Q8TAG9 804 aa27.43■■□□□ 1.98
COL9A3-213ENST00000489045 NPLOC4Q8TAT6 608 aa27.43■■□□□ 1.98
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms