RNA–Protein interactions for RNA: ENST00000488896.1

PTPN4-212, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 575 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-212ENST00000488896 ZNF512BQ96KM6 892 aaPredicted RBP8.13□□□□□ -1.11
PTPN4-212ENST00000488896 FMNL2Q96PY5 1086 aa8.13□□□□□ -1.11
PTPN4-212ENST00000488896 ASPNQ9BXN1 380 aa8.13□□□□□ -1.11
PTPN4-212ENST00000488896 DDX41Q9UJV9 622 aaKnown RBP8.13□□□□□ -1.11
PTPN4-212ENST00000488896 CARMIL2Q6F5E8 1435 aa8.12□□□□□ -1.11
PTPN4-212ENST00000488896 DNAJC25-GNG10A0A024R161 153 aa8.12□□□□□ -1.11
PTPN4-212ENST00000488896 LTKP29376 864 aa8.12□□□□□ -1.11
PTPN4-212ENST00000488896 TXKP42681 527 aa8.12□□□□□ -1.11
PTPN4-212ENST00000488896 CLEC16AQ2KHT3 1053 aa8.12□□□□□ -1.11
PTPN4-212ENST00000488896 TMEM40Q8WWA1 233 aa8.12□□□□□ -1.11
PTPN4-212ENST00000488896 ALPK1Q96QP1 1244 aa8.12□□□□□ -1.11
PTPN4-212ENST00000488896 GPR62Q9BZJ7 368 aa8.12□□□□□ -1.11
PTPN4-212ENST00000488896 CNNM2Q9H8M5 875 aa8.12□□□□□ -1.11
PTPN4-212ENST00000488896 SHISA3A0PJX4 238 aa8.11□□□□□ -1.11
PTPN4-212ENST00000488896 VAMP1P23763 118 aa8.11□□□□□ -1.11
PTPN4-212ENST00000488896 HK2P52789 917 aa8.11□□□□□ -1.11
PTPN4-212ENST00000488896 EGR3Q06889 387 aa8.11□□□□□ -1.11
PTPN4-212ENST00000488896 RALGPS1Q5JS13 557 aa8.11□□□□□ -1.11
PTPN4-212ENST00000488896 FYB2Q5VWT5 728 aa8.11□□□□□ -1.11
PTPN4-212ENST00000488896 CDCP2Q5VXM1 449 aa8.11□□□□□ -1.11
PTPN4-212ENST00000488896 TTC6Q86TZ1 520 aa8.11□□□□□ -1.11
PTPN4-212ENST00000488896 TSPYL5Q86VY4 417 aaPredicted RBP8.11□□□□□ -1.11
PTPN4-212ENST00000488896 FLAD1Q8NFF5 587 aa8.11□□□□□ -1.11
PTPN4-212ENST00000488896 FERD3LQ96RJ6 166 aa8.11□□□□□ -1.11
PTPN4-212ENST00000488896 KIAA1522Q9P206 1035 aaPredicted RBP8.11□□□□□ -1.11
PTPN4-212ENST00000488896 SRFP11831 508 aa8.1□□□□□ -1.11
PTPN4-212ENST00000488896 NME1P15531 152 aaKnown RBP8.1□□□□□ -1.11
PTPN4-212ENST00000488896 RNF4P78317 190 aa8.1□□□□□ -1.11
PTPN4-212ENST00000488896 GAB4Q2WGN9 574 aa8.1□□□□□ -1.11
PTPN4-212ENST00000488896 LRRFIP1Q32MZ4 808 aaKnown RBP8.1□□□□□ -1.11
PTPN4-212ENST00000488896 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP8.1□□□□□ -1.11
PTPN4-212ENST00000488896 ASCC2Q9H1I8 757 aaPredicted RBP8.1□□□□□ -1.11
PTPN4-212ENST00000488896 ADAMTS10Q9H324 1103 aa8.1□□□□□ -1.11
PTPN4-212ENST00000488896 C19orf73Q9NVV2 129 aa8.1□□□□□ -1.11
PTPN4-212ENST00000488896 PCDHA11Q9Y5I1 949 aa8.1□□□□□ -1.11
PTPN4-212ENST00000488896 CLEC3AO75596 197 aa8.09□□□□□ -1.11
PTPN4-212ENST00000488896 AFMP43652 599 aa8.09□□□□□ -1.11
PTPN4-212ENST00000488896 HDLBPQ00341 1268 aaKnown RBP8.09□□□□□ -1.11
PTPN4-212ENST00000488896 KCNMB1Q16558 191 aa8.09□□□□□ -1.11
PTPN4-212ENST00000488896 OGFOD2Q6N063 350 aa8.09□□□□□ -1.11
PTPN4-212ENST00000488896 METTL16Q86W50 562 aaKnown RBP8.09□□□□□ -1.11
PTPN4-212ENST00000488896 ZSWIM9Q86XI8 627 aa8.09□□□□□ -1.11
PTPN4-212ENST00000488896 ZNF654Q8IZM8 581 aa8.09□□□□□ -1.11
PTPN4-212ENST00000488896 VWCEQ96DN2 955 aa8.09□□□□□ -1.11
PTPN4-212ENST00000488896 KRTAP9-2Q9BYQ4 174 aa8.09□□□□□ -1.11
PTPN4-212ENST00000488896 PPT2Q9UMR5 302 aa8.09□□□□□ -1.11
PTPN4-212ENST00000488896 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.09□□□□□ -1.11
PTPN4-212ENST00000488896 GDNFP39905 211 aa8.08□□□□□ -1.12
PTPN4-212ENST00000488896 ERVFC1P60507 584 aa8.08□□□□□ -1.12
PTPN4-212ENST00000488896 PAK2Q13177 524 aa8.08□□□□□ -1.12
PTPN4-212ENST00000488896 NMIQ13287 307 aaPredicted RBP8.08□□□□□ -1.12
PTPN4-212ENST00000488896 NBPF12Q5TAG4 269 aaPredicted RBP8.08□□□□□ -1.12
PTPN4-212ENST00000488896 NT5DC4Q86YG4 428 aa8.08□□□□□ -1.12
PTPN4-212ENST00000488896 TMEM192Q8IY95 271 aa8.08□□□□□ -1.12
PTPN4-212ENST00000488896 KIRREL1Q96J84 757 aa8.08□□□□□ -1.12
PTPN4-212ENST00000488896 SLC6A18Q96N87 628 aa8.08□□□□□ -1.12
PTPN4-212ENST00000488896 SLC9A7Q96T83 725 aa8.08□□□□□ -1.12
PTPN4-212ENST00000488896 CCDC9Q9Y3X0 531 aaKnown RBP8.08□□□□□ -1.12
PTPN4-212ENST00000488896 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.07□□□□□ -1.12
PTPN4-212ENST00000488896 SNW1Q13573 536 aaKnown RBP8.07□□□□□ -1.12
PTPN4-212ENST00000488896 CCDC81Q6ZN84 652 aa8.07□□□□□ -1.12
PTPN4-212ENST00000488896 TMC3Q7Z5M5 1100 aa8.07□□□□□ -1.12
PTPN4-212ENST00000488896 CCDC120Q96HB5 630 aa8.07□□□□□ -1.12
PTPN4-212ENST00000488896 MKRN2Q9H000 416 aaKnown RBP8.07□□□□□ -1.12
PTPN4-212ENST00000488896 TMEM59LQ9UK28 342 aa8.07□□□□□ -1.12
PTPN4-212ENST00000488896 ZNRF3Q9ULT6 936 aa8.07□□□□□ -1.12
PTPN4-212ENST00000488896 MEIS3P2A8K0S8 358 aa8.06□□□□□ -1.12
PTPN4-212ENST00000488896 RAD51AP2Q09MP3 1159 aa8.06□□□□□ -1.12
PTPN4-212ENST00000488896 NBPF9Q3BBW0 867 aa8.06□□□□□ -1.12
PTPN4-212ENST00000488896 GINM1Q9NU53 330 aa8.06□□□□□ -1.12
PTPN4-212ENST00000488896 EPB41L3Q9Y2J2 1087 aaPredicted RBP8.06□□□□□ -1.12
PTPN4-212ENST00000488896 KRTAP9-6A0A140TA67 174 aa8.05□□□□□ -1.12
PTPN4-212ENST00000488896 RAC2P15153 192 aa8.05□□□□□ -1.12
PTPN4-212ENST00000488896 TMEM67Q5HYA8 995 aa8.05□□□□□ -1.12
PTPN4-212ENST00000488896 RUFY4Q6ZNE9 571 aa8.05□□□□□ -1.12
PTPN4-212ENST00000488896 SYTL4Q96C24 671 aaPredicted RBP8.05□□□□□ -1.12
PTPN4-212ENST00000488896 LIN37Q96GY3 246 aaPredicted RBP8.05□□□□□ -1.12
PTPN4-212ENST00000488896 MINPP1Q9UNW1 487 aa8.05□□□□□ -1.12
PTPN4-212ENST00000488896 EFR3BQ9Y2G0 817 aa8.05□□□□□ -1.12
PTPN4-212ENST00000488896 MEIS1O00470 390 aa8.04□□□□□ -1.12
PTPN4-212ENST00000488896 TNFRSF10CO14798 259 aa8.04□□□□□ -1.12
PTPN4-212ENST00000488896 ACRP10323 421 aa8.04□□□□□ -1.12
PTPN4-212ENST00000488896 IMPDH2P12268 514 aa8.04□□□□□ -1.12
PTPN4-212ENST00000488896 TRHRP34981 398 aaPredicted RBP8.04□□□□□ -1.12
PTPN4-212ENST00000488896 CCNFP41002 786 aa8.04□□□□□ -1.12
PTPN4-212ENST00000488896 ZNF648Q5T619 568 aaPredicted RBP8.04□□□□□ -1.12
PTPN4-212ENST00000488896 MPZL3Q6UWV2 235 aa8.04□□□□□ -1.12
PTPN4-212ENST00000488896 PRDM14Q9GZV8 571 aa8.04□□□□□ -1.12
PTPN4-212ENST00000488896 FAM86C1Q9NVL1 165 aa8.04□□□□□ -1.12
PTPN4-212ENST00000488896 FBXL21Q9UKT6 434 aa8.04□□□□□ -1.12
PTPN4-212ENST00000488896 SSU72P8A0A1W2PR75 194 aa8.03□□□□□ -1.12
PTPN4-212ENST00000488896 ZNF503-AS2A6NEH8 195 aa8.03□□□□□ -1.12
PTPN4-212ENST00000488896 LRRC10BA6NIK2 292 aa8.03□□□□□ -1.12
PTPN4-212ENST00000488896 PRAMEF1O95521 474 aa8.03□□□□□ -1.12
PTPN4-212ENST00000488896 MLANAQ16655 118 aa8.03□□□□□ -1.12
PTPN4-212ENST00000488896 TDRD10Q5VZ19 366 aaKnown RBP8.03□□□□□ -1.12
PTPN4-212ENST00000488896 ABHD4Q8TB40 342 aa8.03□□□□□ -1.12
PTPN4-212ENST00000488896 MYLIPQ8WY64 445 aa8.03□□□□□ -1.12
PTPN4-212ENST00000488896 TCTN2Q96GX1 697 aa8.03□□□□□ -1.12
PTPN4-212ENST00000488896 HDAC8Q9BY41 377 aa8.03□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms