RNA–Protein interactions for RNA: ENST00000488454.5

SKA1-204, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 3 BASIC

Gene SKA1, Length 669 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-204ENST00000488454 CLMNQ96JQ2 1002 aa12.15□□□□□ -0.46
SKA1-204ENST00000488454 TBC1D2Q9BYX2 928 aa12.15□□□□□ -0.46
SKA1-204ENST00000488454 AS3MTQ9HBK9 375 aa12.15□□□□□ -0.46
SKA1-204ENST00000488454 ZBTB21Q9ULJ3 1066 aa12.15□□□□□ -0.46
SKA1-204ENST00000488454 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12.15□□□□□ -0.46
SKA1-204ENST00000488454 MYH1P12882 1939 aa12.14□□□□□ -0.47
SKA1-204ENST00000488454 SPDYE16A6NNV3 312 aaPredicted RBP12.14□□□□□ -0.47
SKA1-204ENST00000488454 B4E1Z4 1266 aa12.14□□□□□ -0.47
SKA1-204ENST00000488454 HSPA6P17066 643 aa12.14□□□□□ -0.47
SKA1-204ENST00000488454 PTPRAP18433 802 aa12.14□□□□□ -0.47
SKA1-204ENST00000488454 ECE1P42892 770 aa12.14□□□□□ -0.47
SKA1-204ENST00000488454 PPATQ06203 517 aa12.14□□□□□ -0.47
SKA1-204ENST00000488454 TSGA10IPQ3SY00 556 aa12.14□□□□□ -0.47
SKA1-204ENST00000488454 CCDC178Q5BJE1 867 aa12.14□□□□□ -0.47
SKA1-204ENST00000488454 IQCA1Q86XH1 822 aa12.14□□□□□ -0.47
SKA1-204ENST00000488454 NEDD1Q8NHV4 660 aa12.14□□□□□ -0.47
SKA1-204ENST00000488454 OPTNQ96CV9 577 aa12.14□□□□□ -0.47
SKA1-204ENST00000488454 NBPF3Q9H094 633 aa12.14□□□□□ -0.47
SKA1-204ENST00000488454 KANSL2Q9H9L4 492 aa12.14□□□□□ -0.47
SKA1-204ENST00000488454 SNCAIPQ9Y6H5 919 aa12.14□□□□□ -0.47
SKA1-204ENST00000488454 ZHX2Q9Y6X8 837 aa12.14□□□□□ -0.47
SKA1-204ENST00000488454 NAV1Q8NEY1 1877 aa12.14□□□□□ -0.47
SKA1-204ENST00000488454 FOCADQ5VW36 1801 aa12.14□□□□□ -0.47
SKA1-204ENST00000488454 KDM4AO75164 1064 aa12.13□□□□□ -0.47
SKA1-204ENST00000488454 HMGB1P09429 215 aaKnown RBP12.13□□□□□ -0.47
SKA1-204ENST00000488454 PSMA5P28066 241 aa12.13□□□□□ -0.47
SKA1-204ENST00000488454 ATP2B2Q01814 1243 aa12.13□□□□□ -0.47
SKA1-204ENST00000488454 GRM1Q13255 1194 aa12.13□□□□□ -0.47
SKA1-204ENST00000488454 SEPT2Q15019 361 aa12.13□□□□□ -0.47
SKA1-204ENST00000488454 NEK1Q96PY6 1258 aa12.13□□□□□ -0.47
SKA1-204ENST00000488454 BACH2Q9BYV9 841 aa12.13□□□□□ -0.47
SKA1-204ENST00000488454 ARHGEF10LQ9HCE6 1279 aa12.13□□□□□ -0.47
SKA1-204ENST00000488454 ZSWIM5Q9P217 1185 aa12.13□□□□□ -0.47
SKA1-204ENST00000488454 BAZ2AQ9UIF9 1905 aaKnown RBP12.13□□□□□ -0.47
SKA1-204ENST00000488454 PAPPA2Q9BXP8 1791 aa12.13□□□□□ -0.47
SKA1-204ENST00000488454 NEDD4P46934 1319 aa12.12□□□□□ -0.47
SKA1-204ENST00000488454 ERICH2A1L162 156 aa12.12□□□□□ -0.47
SKA1-204ENST00000488454 SPDYE5A6NIY4 337 aa12.12□□□□□ -0.47
SKA1-204ENST00000488454 RASSF10A6NK89 507 aa12.12□□□□□ -0.47
SKA1-204ENST00000488454 JAG1P78504 1218 aa12.12□□□□□ -0.47
SKA1-204ENST00000488454 ICA1Q05084 483 aa12.12□□□□□ -0.47
SKA1-204ENST00000488454 SART3Q15020 963 aaKnown RBP12.12□□□□□ -0.47
SKA1-204ENST00000488454 ZNF280CQ8ND82 737 aa12.12□□□□□ -0.47
SKA1-204ENST00000488454 KCNB2Q92953 911 aa12.12□□□□□ -0.47
SKA1-204ENST00000488454 FEZ1Q99689 392 aa12.12□□□□□ -0.47
SKA1-204ENST00000488454 UBAC1Q9BSL1 405 aa12.12□□□□□ -0.47
SKA1-204ENST00000488454 WDR18Q9BV38 432 aa12.12□□□□□ -0.47
SKA1-204ENST00000488454 C22orf23Q9BZE7 217 aa12.12□□□□□ -0.47
SKA1-204ENST00000488454 SH2D4AQ9H788 454 aa12.12□□□□□ -0.47
SKA1-204ENST00000488454 TCP11L1Q9NUJ3 509 aa12.12□□□□□ -0.47
SKA1-204ENST00000488454 SNX14Q9Y5W7 946 aa12.12□□□□□ -0.47
SKA1-204ENST00000488454 TACC3Q9Y6A5 838 aa12.12□□□□□ -0.47
SKA1-204ENST00000488454 CDK5RAP2Q96SN8 1893 aa12.12□□□□□ -0.47
SKA1-204ENST00000488454 TRIM75PA6NK02 468 aa12.11□□□□□ -0.47
SKA1-204ENST00000488454 USP17L10C9JJH3 530 aa12.11□□□□□ -0.47
SKA1-204ENST00000488454 CXCL11O14625 94 aa12.11□□□□□ -0.47
SKA1-204ENST00000488454 TTLL1O95922 423 aa12.11□□□□□ -0.47
SKA1-204ENST00000488454 ZBTB48P10074 688 aaPredicted RBP12.11□□□□□ -0.47
SKA1-204ENST00000488454 MCM5P33992 734 aa12.11□□□□□ -0.47
SKA1-204ENST00000488454 ANAPC15P60006 121 aa12.11□□□□□ -0.47
SKA1-204ENST00000488454 SPP2Q13103 211 aa12.11□□□□□ -0.47
SKA1-204ENST00000488454 PPIL2Q13356 520 aa12.11□□□□□ -0.47
SKA1-204ENST00000488454 SPRYD7Q5W111 196 aa12.11□□□□□ -0.47
SKA1-204ENST00000488454 CYP4F22Q6NT55 531 aa12.11□□□□□ -0.47
SKA1-204ENST00000488454 STOX1Q6ZVD7 989 aa12.11□□□□□ -0.47
SKA1-204ENST00000488454 WNK4Q96J92 1243 aa12.11□□□□□ -0.47
SKA1-204ENST00000488454 JAKMIP1Q96N16 626 aaKnown RBP12.11□□□□□ -0.47
SKA1-204ENST00000488454 TTC14Q96N46 770 aa12.11□□□□□ -0.47
SKA1-204ENST00000488454 MTMR4Q9NYA4 1195 aa12.11□□□□□ -0.47
SKA1-204ENST00000488454 CLIP2Q9UDT6 1046 aa12.11□□□□□ -0.47
SKA1-204ENST00000488454 STX8Q9UNK0 236 aa12.11□□□□□ -0.47
SKA1-204ENST00000488454 AFG3L2Q9Y4W6 797 aa12.11□□□□□ -0.47
SKA1-204ENST00000488454 PCDHGA10Q9Y5H3 936 aa12.11□□□□□ -0.47
SKA1-204ENST00000488454 TAF6LQ9Y6J9 622 aa12.11□□□□□ -0.47
SKA1-204ENST00000488454 C19orf81C9J6K1 198 aa12.1□□□□□ -0.47
SKA1-204ENST00000488454 IFIT3O14879 490 aaKnown RBP12.1□□□□□ -0.47
SKA1-204ENST00000488454 IRF6O14896 467 aa12.1□□□□□ -0.47
SKA1-204ENST00000488454 SLC10A3P09131 477 aa12.1□□□□□ -0.47
SKA1-204ENST00000488454 EEF2P13639 858 aaKnown RBP12.1□□□□□ -0.47
SKA1-204ENST00000488454 GUCY1A2P33402 732 aa12.1□□□□□ -0.47
SKA1-204ENST00000488454 GTF2A2P52657 109 aa12.1□□□□□ -0.47
SKA1-204ENST00000488454 HTRA3P83110 453 aa12.1□□□□□ -0.47
SKA1-204ENST00000488454 FGD1P98174 961 aa12.1□□□□□ -0.47
SKA1-204ENST00000488454 SNAPC2Q13487 334 aa12.1□□□□□ -0.47
SKA1-204ENST00000488454 SHROOM1Q2M3G4 852 aaPredicted RBP12.1□□□□□ -0.47
SKA1-204ENST00000488454 BLOC1S2Q6QNY1 142 aa12.1□□□□□ -0.47
SKA1-204ENST00000488454 DHX32Q7L7V1 743 aaKnown RBP12.1□□□□□ -0.47
SKA1-204ENST00000488454 CCDC84Q86UT8 332 aaPredicted RBP12.1□□□□□ -0.47
SKA1-204ENST00000488454 RASAL3Q86YV0 1011 aa12.1□□□□□ -0.47
SKA1-204ENST00000488454 CEP95Q96GE4 821 aa12.1□□□□□ -0.47
SKA1-204ENST00000488454 CAPNS2Q96L46 248 aa12.1□□□□□ -0.47
SKA1-204ENST00000488454 ZSCAN10Q96SZ4 725 aaPredicted RBP12.1□□□□□ -0.47
SKA1-204ENST00000488454 ZKSCAN3Q9BRR0 538 aa12.1□□□□□ -0.47
SKA1-204ENST00000488454 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.1□□□□□ -0.47
SKA1-204ENST00000488454 TMOD4Q9NZQ9 345 aa12.1□□□□□ -0.47
SKA1-204ENST00000488454 NYAP2Q9P242 653 aa12.1□□□□□ -0.47
SKA1-204ENST00000488454 FRMD4AQ9P2Q2 1039 aaPredicted RBP12.1□□□□□ -0.47
SKA1-204ENST00000488454 DDX60LQ5H9U9 1706 aaKnown RBP12.1□□□□□ -0.47
SKA1-204ENST00000488454 TRPM7Q96QT4 1865 aa12.1□□□□□ -0.47
SKA1-204ENST00000488454 IGKV6D-41A0A0C4DH26 115 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms