RNA–Protein interactions for RNA: ENST00000487984.1

SDC3-204, Transcript of syndecan 3, humanhuman

TSL 3

Gene SDC3, Length 355 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-204ENST00000487984 RNF113AO15541 343 aaKnown RBP14.76□□□□□ -0.05
SDC3-204ENST00000487984 WDR78Q5VTH9 848 aa14.76□□□□□ -0.05
SDC3-204ENST00000487984 TRMT44Q8IYL2 757 aaKnown RBP14.76□□□□□ -0.05
SDC3-204ENST00000487984 OTUD7AQ8TE49 926 aaPredicted RBP14.76□□□□□ -0.05
SDC3-204ENST00000487984 DIS3LQ8TF46 1054 aaKnown RBP14.76□□□□□ -0.05
SDC3-204ENST00000487984 APPBP2Q92624 585 aa14.76□□□□□ -0.05
SDC3-204ENST00000487984 ARHGEF10LQ9HCE6 1279 aa14.76□□□□□ -0.05
SDC3-204ENST00000487984 ARPP21Q9UBL0 812 aaPredicted RBP14.76□□□□□ -0.05
SDC3-204ENST00000487984 COLQQ9Y215 455 aaPredicted RBP14.76□□□□□ -0.05
SDC3-204ENST00000487984 TMX2Q9Y320 296 aa14.76□□□□□ -0.05
SDC3-204ENST00000487984 TTC41PQ6P2S7 1318 aa14.75□□□□□ -0.05
SDC3-204ENST00000487984 GSG1L2A8MUP6 293 aa14.75□□□□□ -0.05
SDC3-204ENST00000487984 CACNB2Q08289 660 aaPredicted RBP14.75□□□□□ -0.05
SDC3-204ENST00000487984 MAP2K5Q13163 448 aa14.75□□□□□ -0.05
SDC3-204ENST00000487984 COG2Q14746 738 aa14.75□□□□□ -0.05
SDC3-204ENST00000487984 SPICE1Q8N0Z3 855 aa14.75□□□□□ -0.05
SDC3-204ENST00000487984 PI4K2BQ8TCG2 481 aa14.75□□□□□ -0.05
SDC3-204ENST00000487984 LPAR1Q92633 364 aa14.75□□□□□ -0.05
SDC3-204ENST00000487984 PAWRQ96IZ0 340 aaKnown RBP14.75□□□□□ -0.05
SDC3-204ENST00000487984 SH2D4AQ9H788 454 aa14.75□□□□□ -0.05
SDC3-204ENST00000487984 VCPKMTQ9H867 229 aa14.75□□□□□ -0.05
SDC3-204ENST00000487984 HOXC10Q9NYD6 342 aa14.75□□□□□ -0.05
SDC3-204ENST00000487984 PCDH10Q9P2E7 1040 aa14.75□□□□□ -0.05
SDC3-204ENST00000487984 BAZ2AQ9UIF9 1905 aaKnown RBP14.74□□□□□ -0.05
SDC3-204ENST00000487984 SLC15A5A6NIM6 579 aa14.74□□□□□ -0.05
SDC3-204ENST00000487984 M0R2C6 588 aa14.74□□□□□ -0.05
SDC3-204ENST00000487984 GPAA1O43292 621 aa14.74□□□□□ -0.05
SDC3-204ENST00000487984 GLRX3O76003 335 aaKnown RBP14.74□□□□□ -0.05
SDC3-204ENST00000487984 ZFYP08048 801 aaPredicted RBP14.74□□□□□ -0.05
SDC3-204ENST00000487984 PTPREP23469 700 aa14.74□□□□□ -0.05
SDC3-204ENST00000487984 GRB14Q14449 540 aa14.74□□□□□ -0.05
SDC3-204ENST00000487984 SBK1Q52WX2 424 aa14.74□□□□□ -0.05
SDC3-204ENST00000487984 GIMAP6Q6P9H5 292 aa14.74□□□□□ -0.05
SDC3-204ENST00000487984 ANKLE1Q8NAG6 615 aa14.74□□□□□ -0.05
SDC3-204ENST00000487984 CRBNQ96SW2 442 aa14.74□□□□□ -0.05
SDC3-204ENST00000487984 EPB41L4AQ9HCS5 686 aaPredicted RBP14.74□□□□□ -0.05
SDC3-204ENST00000487984 MYH7P12883 1935 aa14.74□□□□□ -0.05
SDC3-204ENST00000487984 ERC2O15083 957 aa14.73□□□□□ -0.05
SDC3-204ENST00000487984 FLOT1O75955 427 aa14.73□□□□□ -0.05
SDC3-204ENST00000487984 EEF2P13639 858 aaKnown RBP14.73□□□□□ -0.05
SDC3-204ENST00000487984 DSG3P32926 999 aa14.73□□□□□ -0.05
SDC3-204ENST00000487984 MNX1P50219 401 aaPredicted RBP14.73□□□□□ -0.05
SDC3-204ENST00000487984 ATP2B2Q01814 1243 aa14.73□□□□□ -0.05
SDC3-204ENST00000487984 CHRDL2Q6WN34 429 aa14.73□□□□□ -0.05
SDC3-204ENST00000487984 NECAB2Q7Z6G3 386 aa14.73□□□□□ -0.05
SDC3-204ENST00000487984 GNL3Q9BVP2 549 aaKnown RBP eCLIP14.73□□□□□ -0.05
SDC3-204ENST00000487984 MOV10L1Q9BXT6 1211 aaKnown RBP14.73□□□□□ -0.05
SDC3-204ENST00000487984 SPATC1LQ9H0A9 340 aa14.73□□□□□ -0.05
SDC3-204ENST00000487984 KANSL2Q9H9L4 492 aa14.73□□□□□ -0.05
SDC3-204ENST00000487984 FLRT1Q9NZU1 646 aa14.73□□□□□ -0.05
SDC3-204ENST00000487984 OGDHLQ9ULD0 1010 aa14.73□□□□□ -0.05
SDC3-204ENST00000487984 IVNS1ABPQ9Y6Y0 642 aa14.73□□□□□ -0.05
SDC3-204ENST00000487984 ROBO3Q96MS0 1386 aa14.73□□□□□ -0.05
SDC3-204ENST00000487984 MINDY4BA8MYZ0 360 aa14.72□□□□□ -0.05
SDC3-204ENST00000487984 WDR46O15213 610 aaKnown RBP14.72□□□□□ -0.05
SDC3-204ENST00000487984 EVI5O60447 810 aa14.72□□□□□ -0.05
SDC3-204ENST00000487984 HOXC6P09630 235 aa14.72□□□□□ -0.05
SDC3-204ENST00000487984 MX1P20591 662 aa14.72□□□□□ -0.05
SDC3-204ENST00000487984 RASA1P20936 1047 aa14.72□□□□□ -0.05
SDC3-204ENST00000487984 CCND3P30281 292 aaPredicted RBP14.72□□□□□ -0.05
SDC3-204ENST00000487984 STK11IPQ8N1F8 1099 aa14.72□□□□□ -0.05
SDC3-204ENST00000487984 MB21D1Q8N884 522 aa14.72□□□□□ -0.05
SDC3-204ENST00000487984 ATG4CQ96DT6 458 aa14.72□□□□□ -0.05
SDC3-204ENST00000487984 NR2E3Q9Y5X4 410 aa14.72□□□□□ -0.05
SDC3-204ENST00000487984 SALL3Q9BXA9 1300 aa14.71□□□□□ -0.05
SDC3-204ENST00000487984 RANBP2P49792 3224 aaKnown RBP14.71□□□□□ -0.05
SDC3-204ENST00000487984 GNAT2P19087 354 aa14.71□□□□□ -0.05
SDC3-204ENST00000487984 ERCC3P19447 782 aa14.71□□□□□ -0.05
SDC3-204ENST00000487984 TDO2P48775 406 aa14.71□□□□□ -0.05
SDC3-204ENST00000487984 LRRFIP1Q32MZ4 808 aaKnown RBP14.71□□□□□ -0.05
SDC3-204ENST00000487984 MFSD14CQ5VZR4 134 aa14.71□□□□□ -0.05
SDC3-204ENST00000487984 SAMD1Q6SPF0 538 aaPredicted RBP14.71□□□□□ -0.05
SDC3-204ENST00000487984 SHCBP1Q8NEM2 672 aa14.71□□□□□ -0.05
SDC3-204ENST00000487984 NPLOC4Q8TAT6 608 aa14.71□□□□□ -0.05
SDC3-204ENST00000487984 SEC62Q99442 399 aaKnown RBP14.71□□□□□ -0.05
SDC3-204ENST00000487984 FSD1Q9BTV5 496 aa14.71□□□□□ -0.05
SDC3-204ENST00000487984 NBPF3Q9H094 633 aa14.71□□□□□ -0.05
SDC3-204ENST00000487984 TRIOBPQ9H2D6 2365 aa14.7□□□□□ -0.06
SDC3-204ENST00000487984 APPP05067 770 aa14.7□□□□□ -0.06
SDC3-204ENST00000487984 ADORA2AP29274 412 aa14.7□□□□□ -0.06
SDC3-204ENST00000487984 FXR1P51114 621 aaKnown RBP eCLIP14.7□□□□□ -0.06
SDC3-204ENST00000487984 PLS1Q14651 629 aa14.7□□□□□ -0.06
SDC3-204ENST00000487984 LHX8Q68G74 356 aa14.7□□□□□ -0.06
SDC3-204ENST00000487984 C11orf49Q9H6J7 331 aa14.7□□□□□ -0.06
SDC3-204ENST00000487984 MKNK2Q9HBH9 465 aa14.7□□□□□ -0.06
SDC3-204ENST00000487984 GOPCQ9HD26 462 aa14.7□□□□□ -0.06
SDC3-204ENST00000487984 FBXO28Q9NVF7 368 aa14.7□□□□□ -0.06
SDC3-204ENST00000487984 A0A0G2JMZ2 1700 aa14.69□□□□□ -0.06
SDC3-204ENST00000487984 RLFQ13129 1914 aa14.69□□□□□ -0.06
SDC3-204ENST00000487984 PATL2C9JE40 543 aaKnown RBP14.69□□□□□ -0.06
SDC3-204ENST00000487984 STRNO43815 780 aa14.69□□□□□ -0.06
SDC3-204ENST00000487984 RAD21O60216 631 aa14.69□□□□□ -0.06
SDC3-204ENST00000487984 IGHA2P01877 340 aa14.69□□□□□ -0.06
SDC3-204ENST00000487984 TMEM132BQ14DG7 1078 aa14.69□□□□□ -0.06
SDC3-204ENST00000487984 ZMYM1Q5SVZ6 1142 aa14.69□□□□□ -0.06
SDC3-204ENST00000487984 FAM83BQ5T0W9 1011 aa14.69□□□□□ -0.06
SDC3-204ENST00000487984 ANKRD45Q5TZF3 282 aa14.69□□□□□ -0.06
SDC3-204ENST00000487984 IFNL3Q8IZI9 196 aa14.69□□□□□ -0.06
SDC3-204ENST00000487984 RBM27Q9P2N5 1060 aaKnown RBP14.69□□□□□ -0.06
SDC3-204ENST00000487984 MYH8P13535 1937 aa14.68□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms