RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 PARP3Q9Y6F1 533 aa20.43■□□□□ 0.86
VIM-206ENST00000487938 A0A1B0GTH6 734 aa20.42■□□□□ 0.86
VIM-206ENST00000487938 H2AFXP16104 143 aaPredicted RBP20.42■□□□□ 0.86
VIM-206ENST00000487938 DPYDQ12882 1025 aa20.42■□□□□ 0.86
VIM-206ENST00000487938 MTF1Q14872 753 aa20.42■□□□□ 0.86
VIM-206ENST00000487938 SPATA1Q5VX52 437 aa20.42■□□□□ 0.86
VIM-206ENST00000487938 CLEC4GQ6UXB4 293 aa20.42■□□□□ 0.86
VIM-206ENST00000487938 LINC00116Q8NCU8 138 aa20.42■□□□□ 0.86
VIM-206ENST00000487938 MNS1Q8NEH6 495 aa20.42■□□□□ 0.86
VIM-206ENST00000487938 FERMT2Q96AC1 680 aa20.42■□□□□ 0.86
VIM-206ENST00000487938 CCDC34Q96HJ3 373 aa20.42■□□□□ 0.86
VIM-206ENST00000487938 PIK3AP1Q6ZUJ8 805 aa20.42■□□□□ 0.86
VIM-206ENST00000487938 APTXQ7Z2E3 356 aaKnown RBP20.42■□□□□ 0.86
VIM-206ENST00000487938 FBXO33Q7Z6M2 555 aa20.42■□□□□ 0.86
VIM-206ENST00000487938 KRT222Q8N1A0 295 aa20.42■□□□□ 0.86
VIM-206ENST00000487938 CTCFLQ8NI51 663 aaPredicted RBP20.42■□□□□ 0.86
VIM-206ENST00000487938 UBXN4Q92575 508 aa20.42■□□□□ 0.86
VIM-206ENST00000487938 BLZF1Q9H2G9 400 aa20.42■□□□□ 0.86
VIM-206ENST00000487938 CNTNAP5Q8WYK1 1306 aa20.41■□□□□ 0.86
VIM-206ENST00000487938 CASQ1P31415 396 aa20.41■□□□□ 0.86
VIM-206ENST00000487938 CLCN6P51797 869 aa20.41■□□□□ 0.86
VIM-206ENST00000487938 NLRP5P59047 1200 aa20.41■□□□□ 0.86
VIM-206ENST00000487938 CUL4BQ13620 913 aa20.41■□□□□ 0.86
VIM-206ENST00000487938 TBC1D9BQ66K14 1250 aa20.41■□□□□ 0.86
VIM-206ENST00000487938 DCP1AQ9NPI6 582 aaPredicted RBP20.41■□□□□ 0.86
VIM-206ENST00000487938 PPP1R3GB7ZBB8 358 aa20.41■□□□□ 0.86
VIM-206ENST00000487938 DDAH1O94760 285 aa20.41■□□□□ 0.86
VIM-206ENST00000487938 PRDX5P30044 214 aa20.41■□□□□ 0.86
VIM-206ENST00000487938 KARSQ15046 597 aaKnown RBP20.41■□□□□ 0.86
VIM-206ENST00000487938 DDX52Q9Y2R4 599 aaKnown RBP eCLIP20.41■□□□□ 0.86
VIM-206ENST00000487938 SYNRGQ9UMZ2 1314 aa20.4■□□□□ 0.86
VIM-206ENST00000487938 AKR1B15C9JRZ8 316 aaPredicted RBP20.4■□□□□ 0.86
VIM-206ENST00000487938 MCM7P33993 719 aa20.4■□□□□ 0.86
VIM-206ENST00000487938 RBL2Q08999 1139 aa20.4■□□□□ 0.86
VIM-206ENST00000487938 SMARCC1Q92922 1105 aaPredicted RBP20.4■□□□□ 0.86
VIM-206ENST00000487938 SOWAHDA6NJG2 315 aa20.39■□□□□ 0.86
VIM-206ENST00000487938 ATP2C1P98194 919 aaPredicted RBP20.39■□□□□ 0.86
VIM-206ENST00000487938 EPC1Q9H2F5 836 aa20.39■□□□□ 0.86
VIM-206ENST00000487938 FAM53CQ9NYF3 392 aa20.39■□□□□ 0.86
VIM-206ENST00000487938 LAMB2P55268 1798 aa20.39■□□□□ 0.86
VIM-206ENST00000487938 RPS8P62241 208 aaKnown RBP20.39■□□□□ 0.85
VIM-206ENST00000487938 IL17AQ16552 155 aa20.39■□□□□ 0.85
VIM-206ENST00000487938 IGSF22Q8N9C0 903 aa20.39■□□□□ 0.85
VIM-206ENST00000487938 GSDMAQ96QA5 445 aa20.39■□□□□ 0.85
VIM-206ENST00000487938 CRNKL1Q9BZJ0 848 aaKnown RBP20.39■□□□□ 0.85
VIM-206ENST00000487938 MYH13Q9UKX3 1938 aa20.39■□□□□ 0.85
VIM-206ENST00000487938 BMP15O95972 392 aa20.38■□□□□ 0.85
VIM-206ENST00000487938 PCP11498 1178 aaKnown RBP20.38■□□□□ 0.85
VIM-206ENST00000487938 SCG2P13521 617 aa20.38■□□□□ 0.85
VIM-206ENST00000487938 HIBADHP31937 336 aaKnown RBP20.38■□□□□ 0.85
VIM-206ENST00000487938 IRX2Q9BZI1 471 aaPredicted RBP20.38■□□□□ 0.85
VIM-206ENST00000487938 ST7Q9NRC1 585 aa20.38■□□□□ 0.85
VIM-206ENST00000487938 CTNND2Q9UQB3 1225 aa20.38■□□□□ 0.85
VIM-206ENST00000487938 TADA3O75528 432 aa20.38■□□□□ 0.85
VIM-206ENST00000487938 PPFIBP1Q86W92 1011 aa20.38■□□□□ 0.85
VIM-206ENST00000487938 MRPL44Q9H9J2 332 aaKnown RBP20.38■□□□□ 0.85
VIM-206ENST00000487938 ADD3Q9UEY8 706 aaKnown RBP20.38■□□□□ 0.85
VIM-206ENST00000487938 XDHP47989 1333 aa20.37■□□□□ 0.85
VIM-206ENST00000487938 GOLGA6L9A6NEM1 432 aa20.37■□□□□ 0.85
VIM-206ENST00000487938 TSPY2A6NKD2 308 aa20.37■□□□□ 0.85
VIM-206ENST00000487938 ORC4O43929 436 aa20.37■□□□□ 0.85
VIM-206ENST00000487938 SRRTQ9BXP5 876 aaKnown RBP20.37■□□□□ 0.85
VIM-206ENST00000487938 RREB1Q92766 1687 aa20.37■□□□□ 0.85
VIM-206ENST00000487938 A0A0U1RQJ8 604 aa20.37■□□□□ 0.85
VIM-206ENST00000487938 CDC25AP30304 524 aa20.37■□□□□ 0.85
VIM-206ENST00000487938 PIP4K2BP78356 416 aa20.37■□□□□ 0.85
VIM-206ENST00000487938 CDKAL1Q5VV42 579 aa20.37■□□□□ 0.85
VIM-206ENST00000487938 TXNRD3Q86VQ6 643 aa20.37■□□□□ 0.85
VIM-206ENST00000487938 CREBRFQ8IUR6 639 aa20.37■□□□□ 0.85
VIM-206ENST00000487938 ATRIPQ8WXE1 791 aa20.37■□□□□ 0.85
VIM-206ENST00000487938 USP17L8P0C7I0 530 aa20.36■□□□□ 0.85
VIM-206ENST00000487938 MAP3K9P80192 1104 aa20.36■□□□□ 0.85
VIM-206ENST00000487938 E2F4Q16254 413 aa20.36■□□□□ 0.85
VIM-206ENST00000487938 CT47A1Q5JQC4 288 aaPredicted RBP20.36■□□□□ 0.85
VIM-206ENST00000487938 RRAGBQ5VZM2 374 aa20.36■□□□□ 0.85
VIM-206ENST00000487938 RAD9BQ6WBX8 426 aa20.36■□□□□ 0.85
VIM-206ENST00000487938 MTRQ99707 1265 aa20.36■□□□□ 0.85
VIM-206ENST00000487938 LZTFL1Q9NQ48 299 aa20.36■□□□□ 0.85
VIM-206ENST00000487938 MCM9Q9NXL9 1143 aa20.36■□□□□ 0.85
VIM-206ENST00000487938 CCT6AP40227 531 aaKnown RBP20.36■□□□□ 0.85
VIM-206ENST00000487938 BMS1Q14692 1282 aaKnown RBP20.36■□□□□ 0.85
VIM-206ENST00000487938 PFKFB3Q16875 520 aaPredicted RBP20.36■□□□□ 0.85
VIM-206ENST00000487938 ZNF771Q7L3S4 317 aaPredicted RBP20.36■□□□□ 0.85
VIM-206ENST00000487938 IQUBQ8NA54 791 aa20.36■□□□□ 0.85
VIM-206ENST00000487938 PANX2Q96RD6 677 aa20.36■□□□□ 0.85
VIM-206ENST00000487938 ATP8A2Q9NTI2 1148 aa20.36■□□□□ 0.85
VIM-206ENST00000487938 SRP68Q9UHB9 627 aaKnown RBP20.36■□□□□ 0.85
VIM-206ENST00000487938 A0A1B0GUL6 1792 aa20.35■□□□□ 0.85
VIM-206ENST00000487938 EFCAB8A8MWE9 144 aa20.35■□□□□ 0.85
VIM-206ENST00000487938 CASP14P31944 242 aa20.35■□□□□ 0.85
VIM-206ENST00000487938 GABPB1Q06547 395 aaPredicted RBP20.35■□□□□ 0.85
VIM-206ENST00000487938 SLC10A5Q5PT55 438 aa20.35■□□□□ 0.85
VIM-206ENST00000487938 RCSD1Q6JBY9 416 aa20.35■□□□□ 0.85
VIM-206ENST00000487938 GPKOWQ92917 476 aaPredicted RBP eCLIP20.35■□□□□ 0.85
VIM-206ENST00000487938 KIFC2Q96AC6 838 aa20.35■□□□□ 0.85
VIM-206ENST00000487938 NLRP3Q96P20 1036 aa20.35■□□□□ 0.85
VIM-206ENST00000487938 FHOD1Q9Y613 1164 aa20.35■□□□□ 0.85
VIM-206ENST00000487938 SEMA3EO15041 775 aa20.34■□□□□ 0.85
VIM-206ENST00000487938 PBX1P40424 430 aa20.34■□□□□ 0.85
VIM-206ENST00000487938 PDXDC2PQ6P474 469 aa20.34■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms