RNA–Protein interactions for RNA: ENST00000487062.1

SF3A3-206, Transcript of splicing factor 3a subunit 3, humanhuman

TSL 2

Gene SF3A3, Length 775 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A3-206ENST00000487062 CCDC17Q96LX7 622 aa8.17□□□□□ -1.1
SF3A3-206ENST00000487062 GMLQ99445 158 aa8.17□□□□□ -1.1
SF3A3-206ENST00000487062 TDRD3Q9H7E2 651 aaKnown RBP8.17□□□□□ -1.1
SF3A3-206ENST00000487062 IL17RBQ9NRM6 502 aa8.17□□□□□ -1.1
SF3A3-206ENST00000487062 STX8Q9UNK0 236 aa8.17□□□□□ -1.1
SF3A3-206ENST00000487062 ELP1O95163 1332 aa8.17□□□□□ -1.1
SF3A3-206ENST00000487062 PLIN4Q96Q06 1357 aa8.17□□□□□ -1.1
SF3A3-206ENST00000487062 COL4A5P29400 1685 aa8.17□□□□□ -1.1
SF3A3-206ENST00000487062 DICER1Q9UPY3 1922 aaKnown RBP8.17□□□□□ -1.1
SF3A3-206ENST00000487062 GOLGA6L4A6NEF3 574 aa8.16□□□□□ -1.1
SF3A3-206ENST00000487062 NFKBIEO00221 500 aa8.16□□□□□ -1.1
SF3A3-206ENST00000487062 SIPA1L1O43166 1804 aa8.16□□□□□ -1.1
SF3A3-206ENST00000487062 PRPF3O43395 683 aaKnown RBP8.16□□□□□ -1.1
SF3A3-206ENST00000487062 MYO1BO43795 1136 aa8.16□□□□□ -1.1
SF3A3-206ENST00000487062 PPFIA3O75145 1194 aa8.16□□□□□ -1.1
SF3A3-206ENST00000487062 TOP1P11387 765 aaKnown RBP8.16□□□□□ -1.1
SF3A3-206ENST00000487062 RPS12P25398 132 aaKnown RBP8.16□□□□□ -1.1
SF3A3-206ENST00000487062 EIF6P56537 245 aaKnown RBP8.16□□□□□ -1.1
SF3A3-206ENST00000487062 UBE2HP62256 183 aa8.16□□□□□ -1.1
SF3A3-206ENST00000487062 CXCL9Q07325 125 aa8.16□□□□□ -1.1
SF3A3-206ENST00000487062 PDE4DQ08499 809 aa8.16□□□□□ -1.1
SF3A3-206ENST00000487062 NFIAQ12857 509 aa8.16□□□□□ -1.1
SF3A3-206ENST00000487062 KRT40Q6A162 431 aa8.16□□□□□ -1.1
SF3A3-206ENST00000487062 TMTC3Q6ZXV5 915 aa8.16□□□□□ -1.1
SF3A3-206ENST00000487062 MTMR14Q8NCE2 650 aa8.16□□□□□ -1.1
SF3A3-206ENST00000487062 MS4A4AQ96JQ5 239 aa8.16□□□□□ -1.1
SF3A3-206ENST00000487062 SPATA32Q96LK8 384 aa8.16□□□□□ -1.1
SF3A3-206ENST00000487062 LZTS2Q9BRK4 669 aa8.16□□□□□ -1.1
SF3A3-206ENST00000487062 GREB1LQ9C091 1923 aaPredicted RBP8.16□□□□□ -1.1
SF3A3-206ENST00000487062 GDPD2Q9HCC8 539 aa8.16□□□□□ -1.1
SF3A3-206ENST00000487062 PI4KBQ9UBF8 816 aa8.16□□□□□ -1.1
SF3A3-206ENST00000487062 FAM198AQ9UFP1 575 aa8.16□□□□□ -1.1
SF3A3-206ENST00000487062 ATRNL1Q5VV63 1379 aa8.15□□□□□ -1.1
SF3A3-206ENST00000487062 TCP10Q12799 353 aa8.15□□□□□ -1.1
SF3A3-206ENST00000487062 GRM4Q14833 912 aa8.15□□□□□ -1.1
SF3A3-206ENST00000487062 FKBP1CQ5VVH2 108 aa8.15□□□□□ -1.1
SF3A3-206ENST00000487062 NBPF11Q86T75 865 aa8.15□□□□□ -1.1
SF3A3-206ENST00000487062 IFNL1Q8IU54 200 aa8.15□□□□□ -1.1
SF3A3-206ENST00000487062 CCDC82Q8N4S0 544 aa8.15□□□□□ -1.1
SF3A3-206ENST00000487062 CHAMP1Q96JM3 812 aa8.15□□□□□ -1.1
SF3A3-206ENST00000487062 PRMT6Q96LA8 375 aaPredicted RBP8.15□□□□□ -1.1
SF3A3-206ENST00000487062 TMEM47Q9BQJ4 181 aa8.15□□□□□ -1.1
SF3A3-206ENST00000487062 GZF1Q9H116 711 aaPredicted RBP8.15□□□□□ -1.1
SF3A3-206ENST00000487062 BRMS1Q9HCU9 246 aa8.15□□□□□ -1.1
SF3A3-206ENST00000487062 TFIP11Q9UBB9 837 aaKnown RBP8.15□□□□□ -1.1
SF3A3-206ENST00000487062 ZNF70Q9UC06 446 aaPredicted RBP8.15□□□□□ -1.1
SF3A3-206ENST00000487062 PCDHAC2Q9Y5I4 1007 aa8.15□□□□□ -1.1
SF3A3-206ENST00000487062 CNTNAP5Q8WYK1 1306 aa8.14□□□□□ -1.11
SF3A3-206ENST00000487062 DDTLA6NHG4 134 aaPredicted RBP8.14□□□□□ -1.11
SF3A3-206ENST00000487062 MPHOSPH10O00566 681 aaKnown RBP8.14□□□□□ -1.11
SF3A3-206ENST00000487062 PLEKHA8P1O95397 391 aa8.14□□□□□ -1.11
SF3A3-206ENST00000487062 TTLL1O95922 423 aa8.14□□□□□ -1.11
SF3A3-206ENST00000487062 PARP1P09874 1014 aaKnown RBP8.14□□□□□ -1.11
SF3A3-206ENST00000487062 AKR1B1P15121 316 aa8.14□□□□□ -1.11
SF3A3-206ENST00000487062 SHMT1P34896 483 aa8.14□□□□□ -1.11
SF3A3-206ENST00000487062 NOVP48745 357 aa8.14□□□□□ -1.11
SF3A3-206ENST00000487062 TNNI2P48788 182 aa8.14□□□□□ -1.11
SF3A3-206ENST00000487062 CACNB3P54284 484 aa8.14□□□□□ -1.11
SF3A3-206ENST00000487062 KIF23Q02241 960 aaPredicted RBP8.14□□□□□ -1.11
SF3A3-206ENST00000487062 MKRN3Q13064 507 aaKnown RBP8.14□□□□□ -1.11
SF3A3-206ENST00000487062 CERKLQ49MI3 558 aaPredicted RBP8.14□□□□□ -1.11
SF3A3-206ENST00000487062 OTUD7BQ6GQQ9 843 aa8.14□□□□□ -1.11
SF3A3-206ENST00000487062 CAVIN1Q6NZI2 390 aaKnown RBP8.14□□□□□ -1.11
SF3A3-206ENST00000487062 FAM173BQ6P4H8 233 aa8.14□□□□□ -1.11
SF3A3-206ENST00000487062 GPT2Q8TD30 523 aa8.14□□□□□ -1.11
SF3A3-206ENST00000487062 LEO1Q8WVC0 666 aaPredicted RBP8.14□□□□□ -1.11
SF3A3-206ENST00000487062 FAM151AQ8WW52 585 aa8.14□□□□□ -1.11
SF3A3-206ENST00000487062 CEP95Q96GE4 821 aa8.14□□□□□ -1.11
SF3A3-206ENST00000487062 AIFM3Q96NN9 605 aa8.14□□□□□ -1.11
SF3A3-206ENST00000487062 MTMR4Q9NYA4 1195 aa8.14□□□□□ -1.11
SF3A3-206ENST00000487062 HERC5Q9UII4 1024 aaKnown RBP8.14□□□□□ -1.11
SF3A3-206ENST00000487062 ISY1Q9ULR0 285 aaKnown RBP8.14□□□□□ -1.11
SF3A3-206ENST00000487062 FARP1Q9Y4F1 1045 aaPredicted RBP8.14□□□□□ -1.11
SF3A3-206ENST00000487062 IGKV6D-41A0A0C4DH26 115 aa8.13□□□□□ -1.11
SF3A3-206ENST00000487062 TCP10L2B9ZVM9 353 aa8.13□□□□□ -1.11
SF3A3-206ENST00000487062 FZD9O00144 591 aa8.13□□□□□ -1.11
SF3A3-206ENST00000487062 GPR37O15354 613 aa8.13□□□□□ -1.11
SF3A3-206ENST00000487062 GADD45BO75293 160 aaPredicted RBP8.13□□□□□ -1.11
SF3A3-206ENST00000487062 LETM1O95202 739 aaPredicted RBP8.13□□□□□ -1.11
SF3A3-206ENST00000487062 MMP1P03956 469 aa8.13□□□□□ -1.11
SF3A3-206ENST00000487062 U2AF2P26368 475 aaKnown RBP eCLIP8.13□□□□□ -1.11
SF3A3-206ENST00000487062 SMARCA1P28370 1054 aa8.13□□□□□ -1.11
SF3A3-206ENST00000487062 RASSF7Q02833 373 aa8.13□□□□□ -1.11
SF3A3-206ENST00000487062 FUT2Q10981 343 aa8.13□□□□□ -1.11
SF3A3-206ENST00000487062 ASPRV1Q53RT3 343 aa8.13□□□□□ -1.11
SF3A3-206ENST00000487062 MYSM1Q5VVJ2 828 aa8.13□□□□□ -1.11
SF3A3-206ENST00000487062 TATDN1Q6P1N9 297 aa8.13□□□□□ -1.11
SF3A3-206ENST00000487062 FAM83AQ86UY5 434 aa8.13□□□□□ -1.11
SF3A3-206ENST00000487062 METTL16Q86W50 562 aaKnown RBP8.13□□□□□ -1.11
SF3A3-206ENST00000487062 ZFPM1Q8IX07 1006 aa8.13□□□□□ -1.11
SF3A3-206ENST00000487062 FAM177A1Q8N128 213 aaPredicted RBP8.13□□□□□ -1.11
SF3A3-206ENST00000487062 CMTR1Q8N1G2 835 aaKnown RBP8.13□□□□□ -1.11
SF3A3-206ENST00000487062 SRBD1Q8N5C6 995 aaKnown RBP8.13□□□□□ -1.11
SF3A3-206ENST00000487062 KRI1Q8N9T8 703 aaKnown RBP8.13□□□□□ -1.11
SF3A3-206ENST00000487062 NLGN2Q8NFZ4 835 aa8.13□□□□□ -1.11
SF3A3-206ENST00000487062 DPF2Q92785 391 aa8.13□□□□□ -1.11
SF3A3-206ENST00000487062 CSRNP1Q96S65 589 aa8.13□□□□□ -1.11
SF3A3-206ENST00000487062 FOXP1Q9H334 677 aaPredicted RBP8.13□□□□□ -1.11
SF3A3-206ENST00000487062 VEZTQ9HBM0 779 aa8.13□□□□□ -1.11
SF3A3-206ENST00000487062 CABP5Q9NP86 173 aa8.13□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms