RNA–Protein interactions for RNA: ENST00000486758.5

SHROOM3-208, Transcript of shroom family member 3, human

TSL 2

Gene SHROOM3, Length 3,766 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHROOM3-208	ENST00000486758	RGS17	Q9UGC6	210 aa	Predicted RBP	13.9	□□□□□ -0.18
SHROOM3-208	ENST00000486758	IKBKB	O14920	756 aa		13.9	□□□□□ -0.18
SHROOM3-208	ENST00000486758	ZNF654	Q8IZM8	581 aa		13.9	□□□□□ -0.18
SHROOM3-208	ENST00000486758	FAM170A	A1A519	330 aa		13.9	□□□□□ -0.19
SHROOM3-208	ENST00000486758	SETD1A	O15047	1707 aa	Known RBP	13.9	□□□□□ -0.19
SHROOM3-208	ENST00000486758	RNASE9	P60153	205 aa	Known RBP	13.9	□□□□□ -0.19
SHROOM3-208	ENST00000486758	NCAPH	Q15003	741 aa		13.9	□□□□□ -0.19
SHROOM3-208	ENST00000486758	FUT8	Q9BYC5	575 aa		13.9	□□□□□ -0.19
SHROOM3-208	ENST00000486758	CNNM2	Q9H8M5	875 aa		13.9	□□□□□ -0.19
SHROOM3-208	ENST00000486758	ZNF652	Q9Y2D9	606 aa		13.9	□□□□□ -0.19
SHROOM3-208	ENST00000486758	PCDHB6	Q9Y5E3	794 aa		13.9	□□□□□ -0.19
SHROOM3-208	ENST00000486758	TNKS	O95271	1327 aa		13.89	□□□□□ -0.19
SHROOM3-208	ENST00000486758	CIAO1	O76071	339 aa		13.89	□□□□□ -0.19
SHROOM3-208	ENST00000486758	FMR1	Q06787	632 aa	Known RBP eCLIP	13.89	□□□□□ -0.19
SHROOM3-208	ENST00000486758	CHRND	Q07001	517 aa		13.89	□□□□□ -0.19
SHROOM3-208	ENST00000486758	HEATR3	Q7Z4Q2	680 aa		13.89	□□□□□ -0.19
SHROOM3-208	ENST00000486758	MB21D2	Q8IYB1	491 aa	Predicted RBP	13.89	□□□□□ -0.19
SHROOM3-208	ENST00000486758	TMEM87B	Q96K49	555 aa		13.89	□□□□□ -0.19
SHROOM3-208	ENST00000486758	MAN1B1	Q9UKM7	699 aa		13.89	□□□□□ -0.19
SHROOM3-208	ENST00000486758	TFR2	Q9UP52	801 aa		13.89	□□□□□ -0.19
SHROOM3-208	ENST00000486758	CEP131	Q9UPN4	1083 aa		13.89	□□□□□ -0.19
SHROOM3-208	ENST00000486758	SYNRG	Q9UMZ2	1314 aa		13.89	□□□□□ -0.19
SHROOM3-208	ENST00000486758	WTIP	A6NIX2	430 aa	Predicted RBP	13.89	□□□□□ -0.19
SHROOM3-208	ENST00000486758	CUTA	O60888	179 aa		13.89	□□□□□ -0.19
SHROOM3-208	ENST00000486758	CLSTN1	O94985	981 aa		13.89	□□□□□ -0.19
SHROOM3-208	ENST00000486758	KRT27	Q7Z3Y8	459 aa		13.89	□□□□□ -0.19
SHROOM3-208	ENST00000486758	NOSTRIN	Q8IVI9	506 aa		13.89	□□□□□ -0.19
SHROOM3-208	ENST00000486758	CNPY4	Q8N129	248 aa		13.89	□□□□□ -0.19
SHROOM3-208	ENST00000486758	OXER1	Q8TDS5	423 aa		13.89	□□□□□ -0.19
SHROOM3-208	ENST00000486758	PNKP	Q96T60	521 aa		13.89	□□□□□ -0.19
SHROOM3-208	ENST00000486758	BCCIP	Q9P287	314 aa	Known RBP eCLIP	13.89	□□□□□ -0.19
SHROOM3-208	ENST00000486758	FAM208A	Q9UK61	1670 aa	Known RBP	13.89	□□□□□ -0.19
SHROOM3-208	ENST00000486758	ZMYM6	O95789	1325 aa		13.89	□□□□□ -0.19
SHROOM3-208	ENST00000486758	LTBP4	Q8N2S1	1624 aa		13.89	□□□□□ -0.19
SHROOM3-208	ENST00000486758	SMIM22	K7EJ46	135 aa		13.88	□□□□□ -0.19
SHROOM3-208	ENST00000486758	ZRANB2	O95218	330 aa	Known RBP eCLIP	13.88	□□□□□ -0.19
SHROOM3-208	ENST00000486758	TRIM21	P19474	475 aa	Known RBP	13.88	□□□□□ -0.19
SHROOM3-208	ENST00000486758	ATP1A2	P50993	1020 aa		13.88	□□□□□ -0.19
SHROOM3-208	ENST00000486758	TSGA10IP	Q3SY00	556 aa		13.88	□□□□□ -0.19
SHROOM3-208	ENST00000486758	PPM1E	Q8WY54	764 aa		13.88	□□□□□ -0.19
SHROOM3-208	ENST00000486758	GPR108	Q9NPR9	543 aa		13.88	□□□□□ -0.19
SHROOM3-208	ENST00000486758	HDAC6	Q9UBN7	1215 aa		13.88	□□□□□ -0.19
SHROOM3-208	ENST00000486758	CCDC194	A0A1B0GVG4	234 aa		13.88	□□□□□ -0.19
SHROOM3-208	ENST00000486758	FAM205C	A6NFA0	338 aa		13.88	□□□□□ -0.19
SHROOM3-208	ENST00000486758	FAM76A	Q8TAV0	307 aa		13.88	□□□□□ -0.19
SHROOM3-208	ENST00000486758	RASGRP4	Q8TDF6	673 aa		13.88	□□□□□ -0.19
SHROOM3-208	ENST00000486758	IL17RA	Q96F46	866 aa		13.88	□□□□□ -0.19
SHROOM3-208	ENST00000486758	GOLGA6C	A6NDK9	693 aa		13.88	□□□□□ -0.19
SHROOM3-208	ENST00000486758	GOLGA6D	P0CG33	693 aa		13.88	□□□□□ -0.19
SHROOM3-208	ENST00000486758	CRKL	P46109	303 aa	Known RBP	13.88	□□□□□ -0.19
SHROOM3-208	ENST00000486758	EIF6	P56537	245 aa	Known RBP	13.88	□□□□□ -0.19
SHROOM3-208	ENST00000486758	MAP3K9	P80192	1104 aa		13.88	□□□□□ -0.19
SHROOM3-208	ENST00000486758	IK	Q13123	557 aa	Predicted RBP	13.88	□□□□□ -0.19
SHROOM3-208	ENST00000486758	STIM1	Q13586	685 aa		13.88	□□□□□ -0.19
SHROOM3-208	ENST00000486758	METTL16	Q86W50	562 aa	Known RBP	13.88	□□□□□ -0.19
SHROOM3-208	ENST00000486758	HOMEZ	Q8IX15	550 aa		13.88	□□□□□ -0.19
SHROOM3-208	ENST00000486758	STRBP	Q96SI9	672 aa	Known RBP	13.88	□□□□□ -0.19
SHROOM3-208	ENST00000486758	ISCA1	Q9BUE6	129 aa		13.88	□□□□□ -0.19
SHROOM3-208	ENST00000486758	GOLGA6A	Q9NYA3	693 aa		13.88	□□□□□ -0.19
SHROOM3-208	ENST00000486758	AKAP12	Q02952	1782 aa		13.87	□□□□□ -0.19
SHROOM3-208	ENST00000486758	SH2B2	O14492	632 aa	Predicted RBP	13.87	□□□□□ -0.19
SHROOM3-208	ENST00000486758	APBA3	O96018	575 aa		13.87	□□□□□ -0.19
SHROOM3-208	ENST00000486758	GRIN1	Q05586	938 aa		13.87	□□□□□ -0.19
SHROOM3-208	ENST00000486758	PPARA	Q07869	468 aa		13.87	□□□□□ -0.19
SHROOM3-208	ENST00000486758	CCDC93	Q567U6	631 aa		13.87	□□□□□ -0.19
SHROOM3-208	ENST00000486758	ICE2	Q659A1	982 aa		13.87	□□□□□ -0.19
SHROOM3-208	ENST00000486758	KCTD16	Q68DU8	428 aa		13.87	□□□□□ -0.19
SHROOM3-208	ENST00000486758	SND1	Q7KZF4	910 aa	Known RBP eCLIP	13.87	□□□□□ -0.19
SHROOM3-208	ENST00000486758	KCNB2	Q92953	911 aa		13.87	□□□□□ -0.19
SHROOM3-208	ENST00000486758	CCDC87	Q9NVE4	849 aa		13.87	□□□□□ -0.19
SHROOM3-208	ENST00000486758	NMT2	O60551	498 aa		13.87	□□□□□ -0.19
SHROOM3-208	ENST00000486758	CASP7	P55210	303 aa		13.87	□□□□□ -0.19
SHROOM3-208	ENST00000486758	CCDC96	Q2M329	555 aa		13.87	□□□□□ -0.19
SHROOM3-208	ENST00000486758	USP49	Q70CQ1	688 aa		13.87	□□□□□ -0.19
SHROOM3-208	ENST00000486758	FANCB	Q8NB91	859 aa		13.87	□□□□□ -0.19
SHROOM3-208	ENST00000486758	BCAS4	Q8TDM0	211 aa		13.87	□□□□□ -0.19
SHROOM3-208	ENST00000486758	GJD4	Q96KN9	370 aa	Predicted RBP	13.87	□□□□□ -0.19
SHROOM3-208	ENST00000486758	GPR101	Q96P66	508 aa	Predicted RBP	13.87	□□□□□ -0.19
SHROOM3-208	ENST00000486758	ERLIN2	O94905	339 aa		13.87	□□□□□ -0.19
SHROOM3-208	ENST00000486758	ODF2	Q5BJF6	829 aa		13.87	□□□□□ -0.19
SHROOM3-208	ENST00000486758	ZNF444	Q8N0Y2	327 aa	Predicted RBP	13.87	□□□□□ -0.19
SHROOM3-208	ENST00000486758	MLKL	Q8NB16	471 aa		13.87	□□□□□ -0.19
SHROOM3-208	ENST00000486758	GPKOW	Q92917	476 aa	Predicted RBP eCLIP	13.87	□□□□□ -0.19
SHROOM3-208	ENST00000486758	EPSTI1	Q96J88	318 aa		13.87	□□□□□ -0.19
SHROOM3-208	ENST00000486758	KAT14	Q9H8E8	782 aa		13.87	□□□□□ -0.19
SHROOM3-208	ENST00000486758	CNGA4	Q8IV77	575 aa		13.86	□□□□□ -0.19
SHROOM3-208	ENST00000486758	NOA1	Q8NC60	698 aa	Known RBP	13.86	□□□□□ -0.19
SHROOM3-208	ENST00000486758	GNL3	Q9BVP2	549 aa	Known RBP eCLIP	13.86	□□□□□ -0.19
SHROOM3-208	ENST00000486758	TANGO6	Q9C0B7	1094 aa		13.86	□□□□□ -0.19
SHROOM3-208	ENST00000486758	TRIM10	Q9UDY6	481 aa		13.86	□□□□□ -0.19
SHROOM3-208	ENST00000486758	MYO6	Q9UM54	1294 aa		13.86	□□□□□ -0.19
SHROOM3-208	ENST00000486758	IDE	P14735	1019 aa		13.86	□□□□□ -0.19
SHROOM3-208	ENST00000486758	RAD9B	Q6WBX8	426 aa		13.86	□□□□□ -0.19
SHROOM3-208	ENST00000486758	CEP57	Q86XR8	500 aa		13.86	□□□□□ -0.19
SHROOM3-208	ENST00000486758	TC2N	Q8N9U0	490 aa		13.86	□□□□□ -0.19
SHROOM3-208	ENST00000486758	IFT81	Q8WYA0	676 aa		13.86	□□□□□ -0.19
SHROOM3-208	ENST00000486758	RIPOR2	Q9Y4F9	1068 aa		13.86	□□□□□ -0.19
SHROOM3-208	ENST00000486758	GOLGA8H	P0CJ92	632 aa		13.86	□□□□□ -0.19
SHROOM3-208	ENST00000486758	UBA7	P41226	1012 aa		13.86	□□□□□ -0.19
SHROOM3-208	ENST00000486758	TRMT1L	Q7Z2T5	733 aa	Known RBP	13.86	□□□□□ -0.19

Retrieved 100 of 20,778 RNA–protein pairs in 53 ms