RNA–Protein interactions for RNA: ENST00000481484.1

VPS13D-208, Transcript of vacuolar protein sorting 13 homolog D, human

TSL 5

Gene VPS13D, Length 360 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS13D-208	ENST00000481484	ZNF512B	Q96KM6	892 aa	Predicted RBP	5.08	□□□□□ -1.6
VPS13D-208	ENST00000481484	PTPN18	Q99952	460 aa		5.08	□□□□□ -1.6
VPS13D-208	ENST00000481484	NUDT12	Q9BQG2	462 aa		5.08	□□□□□ -1.6
VPS13D-208	ENST00000481484	OSBPL5	Q9H0X9	879 aa	Predicted RBP	5.08	□□□□□ -1.6
VPS13D-208	ENST00000481484	DHX36	Q9H2U1	1008 aa	Known RBP	5.08	□□□□□ -1.6
VPS13D-208	ENST00000481484	CHMP4B	Q9H444	224 aa	Known RBP	5.08	□□□□□ -1.6
VPS13D-208	ENST00000481484	PARP14	Q460N5	1801 aa		5.08	□□□□□ -1.6
VPS13D-208	ENST00000481484	PLXNB2	O15031	1838 aa		5.07	□□□□□ -1.6
VPS13D-208	ENST00000481484	GPR75-ASB3	A0A0A6YYF3	556 aa		5.07	□□□□□ -1.6
VPS13D-208	ENST00000481484	PDHX	O00330	501 aa		5.07	□□□□□ -1.6
VPS13D-208	ENST00000481484	CTNND1	O60716	968 aa	Known RBP	5.07	□□□□□ -1.6
VPS13D-208	ENST00000481484	BAG3	O95817	575 aa		5.07	□□□□□ -1.6
VPS13D-208	ENST00000481484	ADORA1	P30542	326 aa		5.07	□□□□□ -1.6
VPS13D-208	ENST00000481484	INPP5B	P32019	993 aa		5.07	□□□□□ -1.6
VPS13D-208	ENST00000481484	FCGRT	P55899	365 aa		5.07	□□□□□ -1.6
VPS13D-208	ENST00000481484	WNT7B	P56706	349 aa		5.07	□□□□□ -1.6
VPS13D-208	ENST00000481484	MAP3K10	Q02779	954 aa		5.07	□□□□□ -1.6
VPS13D-208	ENST00000481484	NFIA	Q12857	509 aa		5.07	□□□□□ -1.6
VPS13D-208	ENST00000481484	OS9	Q13438	667 aa	Predicted RBP	5.07	□□□□□ -1.6
VPS13D-208	ENST00000481484	PTPRN	Q16849	979 aa		5.07	□□□□□ -1.6
VPS13D-208	ENST00000481484	FAM110C	Q1W6H9	321 aa		5.07	□□□□□ -1.6
VPS13D-208	ENST00000481484	PKDCC	Q504Y2	493 aa		5.07	□□□□□ -1.6
VPS13D-208	ENST00000481484	HSP90AB4P	Q58FF6	505 aa		5.07	□□□□□ -1.6
VPS13D-208	ENST00000481484	MYSM1	Q5VVJ2	828 aa		5.07	□□□□□ -1.6
VPS13D-208	ENST00000481484	ZSCAN29	Q8IWY8	852 aa	Predicted RBP	5.07	□□□□□ -1.6
VPS13D-208	ENST00000481484	GOLGA6L2	Q8N9W4	650 aa	Predicted RBP	5.07	□□□□□ -1.6
VPS13D-208	ENST00000481484	SPATA5	Q8NB90	893 aa		5.07	□□□□□ -1.6
VPS13D-208	ENST00000481484	SSH3	Q8TE77	659 aa		5.07	□□□□□ -1.6
VPS13D-208	ENST00000481484	R3HDML	Q9H3Y0	253 aa		5.07	□□□□□ -1.6
VPS13D-208	ENST00000481484	AS3MT	Q9HBK9	375 aa		5.07	□□□□□ -1.6
VPS13D-208	ENST00000481484	USP40	Q9NVE5	1235 aa		5.07	□□□□□ -1.6
VPS13D-208	ENST00000481484	EVA1B	Q9NVM1	165 aa		5.07	□□□□□ -1.6
VPS13D-208	ENST00000481484	ABCF2	Q9UG63	623 aa		5.07	□□□□□ -1.6
VPS13D-208	ENST00000481484	FZD1	Q9UP38	647 aa		5.07	□□□□□ -1.6
VPS13D-208	ENST00000481484	PA2G4	Q9UQ80	394 aa	Known RBP	5.07	□□□□□ -1.6
VPS13D-208	ENST00000481484	LAMA3	Q16787	3333 aa		5.07	□□□□□ -1.6
VPS13D-208	ENST00000481484	ALPK3	Q96L96	1907 aa		5.07	□□□□□ -1.6
VPS13D-208	ENST00000481484	MYPN	Q86TC9	1320 aa		5.06	□□□□□ -1.6
VPS13D-208	ENST00000481484	BAZ2A	Q9UIF9	1905 aa	Known RBP	5.06	□□□□□ -1.6
VPS13D-208	ENST00000481484	PHF20L1	A8MW92	1017 aa		5.06	□□□□□ -1.6
VPS13D-208	ENST00000481484	HMMR	O75330	724 aa		5.06	□□□□□ -1.6
VPS13D-208	ENST00000481484	HLA-DOA	P06340	250 aa		5.06	□□□□□ -1.6
VPS13D-208	ENST00000481484	ASNS	P08243	561 aa		5.06	□□□□□ -1.6
VPS13D-208	ENST00000481484	CCNYL3	P0C7X3	344 aa		5.06	□□□□□ -1.6
VPS13D-208	ENST00000481484	BCR	P11274	1271 aa		5.06	□□□□□ -1.6
VPS13D-208	ENST00000481484	PTPRA	P18433	802 aa		5.06	□□□□□ -1.6
VPS13D-208	ENST00000481484	GCLC	P48506	637 aa	Predicted RBP	5.06	□□□□□ -1.6
VPS13D-208	ENST00000481484	RHBDL3	P58872	404 aa		5.06	□□□□□ -1.6
VPS13D-208	ENST00000481484	UBXN2A	P68543	259 aa		5.06	□□□□□ -1.6
VPS13D-208	ENST00000481484	SKOR1	P84550	965 aa		5.06	□□□□□ -1.6
VPS13D-208	ENST00000481484	HNRNPU	Q00839	825 aa	Known RBP eCLIP	5.06	□□□□□ -1.6
VPS13D-208	ENST00000481484	MECOM	Q03112	1051 aa		5.06	□□□□□ -1.6
VPS13D-208	ENST00000481484	TCP10	Q12799	353 aa		5.06	□□□□□ -1.6
VPS13D-208	ENST00000481484	TFCP2	Q12800	502 aa		5.06	□□□□□ -1.6
VPS13D-208	ENST00000481484	TNNI3K	Q59H18	835 aa		5.06	□□□□□ -1.6
VPS13D-208	ENST00000481484	CCDC158	Q5M9N0	1113 aa		5.06	□□□□□ -1.6
VPS13D-208	ENST00000481484	TTC39A	Q5SRH9	613 aa		5.06	□□□□□ -1.6
VPS13D-208	ENST00000481484	C17orf99	Q6UX52	265 aa		5.06	□□□□□ -1.6
VPS13D-208	ENST00000481484	ITPRIP	Q8IWB1	547 aa		5.06	□□□□□ -1.6
VPS13D-208	ENST00000481484	TEX11	Q8IYF3	940 aa		5.06	□□□□□ -1.6
VPS13D-208	ENST00000481484	RAET1E	Q8TD07	263 aa		5.06	□□□□□ -1.6
VPS13D-208	ENST00000481484	SMCR8	Q8TEV9	937 aa	Predicted RBP	5.06	□□□□□ -1.6
VPS13D-208	ENST00000481484	FRAT1	Q92837	279 aa	Predicted RBP	5.06	□□□□□ -1.6
VPS13D-208	ENST00000481484	ZKSCAN4	Q969J2	545 aa	Predicted RBP	5.06	□□□□□ -1.6
VPS13D-208	ENST00000481484	NSUN4	Q96CB9	384 aa	Known RBP	5.06	□□□□□ -1.6
VPS13D-208	ENST00000481484	TRIM34	Q9BYJ4	488 aa		5.06	□□□□□ -1.6
VPS13D-208	ENST00000481484	RAI14	Q9P0K7	980 aa		5.06	□□□□□ -1.6
VPS13D-208	ENST00000481484	HMG20B	Q9P0W2	317 aa		5.06	□□□□□ -1.6
VPS13D-208	ENST00000481484	LRP2BP	Q9P2M1	347 aa		5.06	□□□□□ -1.6
VPS13D-208	ENST00000481484	SRRD	Q9UH36	339 aa		5.06	□□□□□ -1.6
VPS13D-208	ENST00000481484	AGTPBP1	Q9UPW5	1226 aa		5.06	□□□□□ -1.6
VPS13D-208	ENST00000481484	NOP58	Q9Y2X3	529 aa	Known RBP	5.06	□□□□□ -1.6
VPS13D-208	ENST00000481484	PTCH2	Q9Y6C5	1203 aa		5.06	□□□□□ -1.6
VPS13D-208	ENST00000481484	FPGT-TNNI3K	V9GXZ4	949 aa		5.06	□□□□□ -1.6
VPS13D-208	ENST00000481484	GREB1L	Q9C091	1923 aa	Predicted RBP	5.05	□□□□□ -1.6
VPS13D-208	ENST00000481484	FLT1	P17948	1338 aa		5.05	□□□□□ -1.6
VPS13D-208	ENST00000481484	FAM187A	A6NFU0	413 aa		5.05	□□□□□ -1.6
VPS13D-208	ENST00000481484	CFAP99	D6REC4	459 aa		5.05	□□□□□ -1.6
VPS13D-208	ENST00000481484	LILRB3	O75022	631 aa		5.05	□□□□□ -1.6
VPS13D-208	ENST00000481484	AVP	P01185	164 aa		5.05	□□□□□ -1.6
VPS13D-208	ENST00000481484	MCAM	P43121	646 aa		5.05	□□□□□ -1.6
VPS13D-208	ENST00000481484	PSMC4	P43686	418 aa		5.05	□□□□□ -1.6
VPS13D-208	ENST00000481484	KCNH2	Q12809	1159 aa		5.05	□□□□□ -1.6
VPS13D-208	ENST00000481484	PICALM	Q13492	652 aa		5.05	□□□□□ -1.6
VPS13D-208	ENST00000481484	IRF5	Q13568	498 aa		5.05	□□□□□ -1.6
VPS13D-208	ENST00000481484	MOGS	Q13724	837 aa		5.05	□□□□□ -1.6
VPS13D-208	ENST00000481484	TTF1	Q15361	905 aa	Predicted RBP	5.05	□□□□□ -1.6
VPS13D-208	ENST00000481484	SLC4A8	Q2Y0W8	1093 aa		5.05	□□□□□ -1.6
VPS13D-208	ENST00000481484	NAA16	Q6N069	864 aa	Predicted RBP	5.05	□□□□□ -1.6
VPS13D-208	ENST00000481484	LYPD8	Q6UX82	237 aa		5.05	□□□□□ -1.6
VPS13D-208	ENST00000481484	MIGA2	Q7L4E1	593 aa		5.05	□□□□□ -1.6
VPS13D-208	ENST00000481484	CYP4X1	Q8N118	509 aa		5.05	□□□□□ -1.6
VPS13D-208	ENST00000481484	TMEM57	Q8N5G2	664 aa		5.05	□□□□□ -1.6
VPS13D-208	ENST00000481484	SNIP1	Q8TAD8	396 aa	Known RBP	5.05	□□□□□ -1.6
VPS13D-208	ENST00000481484	SOCS4	Q8WXH5	440 aa		5.05	□□□□□ -1.6
VPS13D-208	ENST00000481484	MRGPRX2	Q96LB1	330 aa		5.05	□□□□□ -1.6
VPS13D-208	ENST00000481484	TRIM47	Q96LD4	638 aa		5.05	□□□□□ -1.6
VPS13D-208	ENST00000481484	NEUROD6	Q96NK8	337 aa		5.05	□□□□□ -1.6
VPS13D-208	ENST00000481484	HTATIP2	Q9BUP3	242 aa		5.05	□□□□□ -1.6
VPS13D-208	ENST00000481484	EHD4	Q9H223	541 aa		5.05	□□□□□ -1.6

Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms