RNA–Protein interactions for RNA: ENST00000480943.5

VPS50-215, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 801 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-215ENST00000480943 INSRP06213 1382 aa8.39□□□□□ -1.07
VPS50-215ENST00000480943 A6NHS1 94 aa8.39□□□□□ -1.07
VPS50-215ENST00000480943 KCNQ2O43526 872 aa8.39□□□□□ -1.07
VPS50-215ENST00000480943 SMNDC1O75940 238 aaKnown RBP eCLIP8.39□□□□□ -1.07
VPS50-215ENST00000480943 WISP1O95388 367 aa8.39□□□□□ -1.07
VPS50-215ENST00000480943 BUD31P41223 144 aaPredicted RBP8.39□□□□□ -1.07
VPS50-215ENST00000480943 FKBP4Q02790 459 aaKnown RBP eCLIP8.39□□□□□ -1.07
VPS50-215ENST00000480943 HSP90AB2PQ58FF8 381 aa8.39□□□□□ -1.07
VPS50-215ENST00000480943 CEP135Q66GS9 1140 aa8.39□□□□□ -1.07
VPS50-215ENST00000480943 ANKRD34AQ69YU3 496 aa8.39□□□□□ -1.07
VPS50-215ENST00000480943 XKR5Q6UX68 686 aa8.39□□□□□ -1.07
VPS50-215ENST00000480943 ZSCAN18Q8TBC5 510 aaPredicted RBP8.39□□□□□ -1.07
VPS50-215ENST00000480943 ANO2Q9NQ90 1003 aa8.39□□□□□ -1.07
VPS50-215ENST00000480943 KANSL3Q9P2N6 904 aa8.39□□□□□ -1.07
VPS50-215ENST00000480943 C5P01031 1676 aa8.39□□□□□ -1.07
VPS50-215ENST00000480943 KIF24Q5T7B8 1368 aa8.38□□□□□ -1.07
VPS50-215ENST00000480943 PLSCR1O15162 318 aa8.38□□□□□ -1.07
VPS50-215ENST00000480943 COL19A1Q14993 1142 aa8.38□□□□□ -1.07
VPS50-215ENST00000480943 DUOXA2Q1HG44 320 aa8.38□□□□□ -1.07
VPS50-215ENST00000480943 NBPF6Q5VWK0 638 aa8.38□□□□□ -1.07
VPS50-215ENST00000480943 NFXL1Q6ZNB6 911 aa8.38□□□□□ -1.07
VPS50-215ENST00000480943 DDX54Q8TDD1 881 aaKnown RBP8.38□□□□□ -1.07
VPS50-215ENST00000480943 NBPF4Q96M43 638 aa8.38□□□□□ -1.07
VPS50-215ENST00000480943 RASSF4Q9H2L5 321 aa8.38□□□□□ -1.07
VPS50-215ENST00000480943 CNTN3Q9P232 1028 aa8.38□□□□□ -1.07
VPS50-215ENST00000480943 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.38□□□□□ -1.07
VPS50-215ENST00000480943 PPM1GO15355 546 aaPredicted RBP8.37□□□□□ -1.07
VPS50-215ENST00000480943 CES1P23141 567 aa8.37□□□□□ -1.07
VPS50-215ENST00000480943 RETREG2Q8NC44 543 aa8.37□□□□□ -1.07
VPS50-215ENST00000480943 LACRTQ9GZZ8 138 aa8.37□□□□□ -1.07
VPS50-215ENST00000480943 PANK3Q9H999 370 aa8.37□□□□□ -1.07
VPS50-215ENST00000480943 RAPGEFL1Q9UHV5 662 aa8.37□□□□□ -1.07
VPS50-215ENST00000480943 TNNT2P45379 298 aaPredicted RBP8.36□□□□□ -1.07
VPS50-215ENST00000480943 USP5P45974 858 aa8.36□□□□□ -1.07
VPS50-215ENST00000480943 EHHADHQ08426 723 aa8.36□□□□□ -1.07
VPS50-215ENST00000480943 TXNRD1Q16881 649 aa8.36□□□□□ -1.07
VPS50-215ENST00000480943 KIAA1211Q6ZU35 1233 aa8.36□□□□□ -1.07
VPS50-215ENST00000480943 CEP120Q8N960 986 aa8.36□□□□□ -1.07
VPS50-215ENST00000480943 C1orf127Q8N9H9 656 aa8.36□□□□□ -1.07
VPS50-215ENST00000480943 GALNT11Q8NCW6 608 aa8.36□□□□□ -1.07
VPS50-215ENST00000480943 ZCRB1Q8TBF4 217 aaKnown RBP8.36□□□□□ -1.07
VPS50-215ENST00000480943 RAPGEF4Q8WZA2 1011 aa8.36□□□□□ -1.07
VPS50-215ENST00000480943 PBX4Q9BYU1 374 aa8.36□□□□□ -1.07
VPS50-215ENST00000480943 EGFL7Q9UHF1 273 aa8.36□□□□□ -1.07
VPS50-215ENST00000480943 NCAPD2Q15021 1401 aa8.36□□□□□ -1.07
VPS50-215ENST00000480943 NSD2O96028 1365 aa8.35□□□□□ -1.07
VPS50-215ENST00000480943 FZD6O60353 706 aa8.35□□□□□ -1.07
VPS50-215ENST00000480943 SYTL4Q96C24 671 aaPredicted RBP8.35□□□□□ -1.07
VPS50-215ENST00000480943 COL24A1Q17RW2 1714 aa8.34□□□□□ -1.07
VPS50-215ENST00000480943 KIF7Q2M1P5 1343 aa8.34□□□□□ -1.07
VPS50-215ENST00000480943 FAM177BA6PVY3 158 aa8.34□□□□□ -1.07
VPS50-215ENST00000480943 H3BRB1 525 aa8.34□□□□□ -1.07
VPS50-215ENST00000480943 CDC27P30260 824 aa8.34□□□□□ -1.07
VPS50-215ENST00000480943 SERPINB4P48594 390 aa8.34□□□□□ -1.07
VPS50-215ENST00000480943 PDE4CQ08493 712 aa8.34□□□□□ -1.07
VPS50-215ENST00000480943 SIAH1Q8IUQ4 282 aa8.34□□□□□ -1.07
VPS50-215ENST00000480943 FBXL6Q8N531 539 aa8.34□□□□□ -1.07
VPS50-215ENST00000480943 KLHL23Q8NBE8 558 aa8.34□□□□□ -1.07
VPS50-215ENST00000480943 TMEM40Q8WWA1 233 aa8.34□□□□□ -1.07
VPS50-215ENST00000480943 PMEPA1Q969W9 287 aa8.34□□□□□ -1.07
VPS50-215ENST00000480943 FAM84AQ96KN4 292 aa8.34□□□□□ -1.07
VPS50-215ENST00000480943 CHRDQ9H2X0 955 aa8.34□□□□□ -1.07
VPS50-215ENST00000480943 TUT1Q9H6E5 874 aaKnown RBP8.34□□□□□ -1.07
VPS50-215ENST00000480943 PAK6Q9NQU5 681 aaPredicted RBP8.34□□□□□ -1.07
VPS50-215ENST00000480943 STK32BQ9NY57 414 aa8.34□□□□□ -1.07
VPS50-215ENST00000480943 POLKQ9UBT6 870 aa8.34□□□□□ -1.07
VPS50-215ENST00000480943 SALL4Q9UJQ4 1053 aa8.34□□□□□ -1.07
VPS50-215ENST00000480943 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP8.34□□□□□ -1.07
VPS50-215ENST00000480943 WASHC2AQ641Q2 1341 aa8.33□□□□□ -1.08
VPS50-215ENST00000480943 PCDH11XQ9BZA7 1347 aa8.33□□□□□ -1.08
VPS50-215ENST00000480943 PCDH11YQ9BZA8 1340 aa8.33□□□□□ -1.08
VPS50-215ENST00000480943 SCN11AQ9UI33 1791 aa8.33□□□□□ -1.08
VPS50-215ENST00000480943 CYP26A1O43174 497 aa8.33□□□□□ -1.08
VPS50-215ENST00000480943 ICMTO60725 284 aa8.33□□□□□ -1.08
VPS50-215ENST00000480943 PHACTR2O75167 634 aa8.33□□□□□ -1.08
VPS50-215ENST00000480943 TNFRSF21O75509 655 aa8.33□□□□□ -1.08
VPS50-215ENST00000480943 F13BP05160 661 aa8.33□□□□□ -1.08
VPS50-215ENST00000480943 PTPRAP18433 802 aa8.33□□□□□ -1.08
VPS50-215ENST00000480943 FAM117BQ6P1L5 589 aa8.33□□□□□ -1.08
VPS50-215ENST00000480943 UBR3Q6ZT12 1888 aa8.33□□□□□ -1.08
VPS50-215ENST00000480943 GLYCTKQ8IVS8 523 aa8.33□□□□□ -1.08
VPS50-215ENST00000480943 SNX29Q8TEQ0 813 aa8.33□□□□□ -1.08
VPS50-215ENST00000480943 CCDC87Q9NVE4 849 aa8.33□□□□□ -1.08
VPS50-215ENST00000480943 LINC01387J3KSC0 135 aa8.32□□□□□ -1.08
VPS50-215ENST00000480943 GAS2O43903 313 aaKnown RBP8.32□□□□□ -1.08
VPS50-215ENST00000480943 ACPPP15309 386 aa8.32□□□□□ -1.08
VPS50-215ENST00000480943 SLC15A2Q16348 729 aa8.32□□□□□ -1.08
VPS50-215ENST00000480943 TXNDC11Q6PKC3 985 aa8.32□□□□□ -1.08
VPS50-215ENST00000480943 GJD3Q8N144 294 aa8.32□□□□□ -1.08
VPS50-215ENST00000480943 PDGFDQ9GZP0 370 aaPredicted RBP8.32□□□□□ -1.08
VPS50-215ENST00000480943 SPON1Q9HCB6 807 aa8.32□□□□□ -1.08
VPS50-215ENST00000480943 C4BP0C0L5 1744 aa8.32□□□□□ -1.08
VPS50-215ENST00000480943 CDC25BP30305 580 aa8.31□□□□□ -1.08
VPS50-215ENST00000480943 EIF4A2Q14240 407 aaKnown RBP8.31□□□□□ -1.08
VPS50-215ENST00000480943 ZNF827Q17R98 1081 aa8.31□□□□□ -1.08
VPS50-215ENST00000480943 ADAMTSL4Q6UY14 1074 aa8.31□□□□□ -1.08
VPS50-215ENST00000480943 MORC1Q86VD1 984 aa8.31□□□□□ -1.08
VPS50-215ENST00000480943 POP1Q99575 1024 aaKnown RBP8.31□□□□□ -1.08
VPS50-215ENST00000480943 PPP1R1BQ9UD71 204 aaPredicted RBP8.31□□□□□ -1.08
VPS50-215ENST00000480943 FOXD3Q9UJU5 478 aaPredicted RBP8.31□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms