RNA–Protein interactions for RNA: ENST00000479965.5

CCDC88B-207, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 3,102 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-207ENST00000479965 PLBD2Q8NHP8 589 aa21.11■□□□□ 0.97
CCDC88B-207ENST00000479965 RAPGEF4Q8WZA2 1011 aa21.11■□□□□ 0.97
CCDC88B-207ENST00000479965 HAUS4Q9H6D7 363 aa21.11■□□□□ 0.97
CCDC88B-207ENST00000479965 EIF3HO15372 352 aaKnown RBP eCLIP21.11■□□□□ 0.97
CCDC88B-207ENST00000479965 GCP02774 474 aa21.11■□□□□ 0.97
CCDC88B-207ENST00000479965 CKAP4Q07065 602 aaKnown RBP21.11■□□□□ 0.97
CCDC88B-207ENST00000479965 KCTD16Q68DU8 428 aa21.11■□□□□ 0.97
CCDC88B-207ENST00000479965 LRP10Q7Z4F1 713 aa21.11■□□□□ 0.97
CCDC88B-207ENST00000479965 PSMB7Q99436 277 aa21.11■□□□□ 0.97
CCDC88B-207ENST00000479965 AXIN2Q9Y2T1 843 aa21.11■□□□□ 0.97
CCDC88B-207ENST00000479965 hCG_1642624A0A1W2PR95 340 aa21.11■□□□□ 0.97
CCDC88B-207ENST00000479965 TTC26A0AVF1 554 aa21.11■□□□□ 0.97
CCDC88B-207ENST00000479965 PDE2AO00408 941 aaPredicted RBP21.11■□□□□ 0.97
CCDC88B-207ENST00000479965 FMNL1O95466 1100 aaPredicted RBP21.11■□□□□ 0.97
CCDC88B-207ENST00000479965 IDEP14735 1019 aa21.11■□□□□ 0.97
CCDC88B-207ENST00000479965 SLC7A5Q01650 507 aa21.11■□□□□ 0.97
CCDC88B-207ENST00000479965 EZH2Q15910 746 aaKnown RBP21.11■□□□□ 0.97
CCDC88B-207ENST00000479965 CCDC70Q6NSX1 233 aa21.11■□□□□ 0.97
CCDC88B-207ENST00000479965 TTLL7Q6ZT98 887 aa21.11■□□□□ 0.97
CCDC88B-207ENST00000479965 POTEDQ86YR6 584 aa21.11■□□□□ 0.97
CCDC88B-207ENST00000479965 OTUD6BQ8N6M0 293 aa21.11■□□□□ 0.97
CCDC88B-207ENST00000479965 OVOS2A0A0G2JMS6 1433 aa21.1■□□□□ 0.97
CCDC88B-207ENST00000479965 KCNJ18B7U540 433 aa21.1■□□□□ 0.97
CCDC88B-207ENST00000479965 H7C1W4 665 aa21.1■□□□□ 0.97
CCDC88B-207ENST00000479965 PSMD14O00487 310 aa21.1■□□□□ 0.97
CCDC88B-207ENST00000479965 PPARAQ07869 468 aa21.1■□□□□ 0.97
CCDC88B-207ENST00000479965 KCNJ12Q14500 433 aa21.1■□□□□ 0.97
CCDC88B-207ENST00000479965 TMEM87BQ96K49 555 aa21.1■□□□□ 0.97
CCDC88B-207ENST00000479965 STRN4Q9NRL3 753 aa21.1■□□□□ 0.97
CCDC88B-207ENST00000479965 VPS54Q9P1Q0 977 aa21.1■□□□□ 0.97
CCDC88B-207ENST00000479965 ZSWIM5Q9P217 1185 aa21.1■□□□□ 0.97
CCDC88B-207ENST00000479965 CHRM1P11229 460 aaPredicted RBP21.1■□□□□ 0.97
CCDC88B-207ENST00000479965 TTF1Q15361 905 aaPredicted RBP21.1■□□□□ 0.97
CCDC88B-207ENST00000479965 HDAC7Q8WUI4 952 aa21.1■□□□□ 0.97
CCDC88B-207ENST00000479965 EEF2KMTQ96G04 330 aa21.1■□□□□ 0.97
CCDC88B-207ENST00000479965 DDX24Q9GZR7 859 aaKnown RBP eCLIP21.1■□□□□ 0.977e-10■■■■■ 57.7
CCDC88B-207ENST00000479965 LUC7L2Q9Y383 392 aaKnown RBP21.1■□□□□ 0.97
CCDC88B-207ENST00000479965 DUSP10Q9Y6W6 482 aa21.1■□□□□ 0.97
CCDC88B-207ENST00000479965 ITIH6Q6UXX5 1313 aa21.09■□□□□ 0.97
CCDC88B-207ENST00000479965 CCDC172P0C7W6 258 aa21.09■□□□□ 0.97
CCDC88B-207ENST00000479965 CYB5RLQ6IPT4 315 aa21.09■□□□□ 0.97
CCDC88B-207ENST00000479965 NLRP2Q9NX02 1062 aa21.09■□□□□ 0.97
CCDC88B-207ENST00000479965 WDR19Q8NEZ3 1342 aa21.09■□□□□ 0.97
CCDC88B-207ENST00000479965 RTN1Q16799 776 aa21.09■□□□□ 0.97
CCDC88B-207ENST00000479965 ZNF579Q8NAF0 562 aaKnown RBP21.09■□□□□ 0.97
CCDC88B-207ENST00000479965 CENPHQ9H3R5 247 aa21.09■□□□□ 0.97
CCDC88B-207ENST00000479965 MYH8P13535 1937 aa21.09■□□□□ 0.97
CCDC88B-207ENST00000479965 IPO7O95373 1038 aaKnown RBP21.09■□□□□ 0.97
CCDC88B-207ENST00000479965 PSEN1P49768 467 aa21.09■□□□□ 0.97
CCDC88B-207ENST00000479965 OR8K1Q8NGG5 319 aa21.09■□□□□ 0.97
CCDC88B-207ENST00000479965 TARSL2A2RTX5 802 aaKnown RBP21.08■□□□□ 0.97
CCDC88B-207ENST00000479965 TRIM75PA6NK02 468 aa21.08■□□□□ 0.97
CCDC88B-207ENST00000479965 HERVK_113P62684 666 aa21.08■□□□□ 0.97
CCDC88B-207ENST00000479965 SH2D3CQ8N5H7 860 aa21.08■□□□□ 0.97
CCDC88B-207ENST00000479965 GSDMAQ96QA5 445 aa21.08■□□□□ 0.97
CCDC88B-207ENST00000479965 FOXP1Q9H334 677 aaPredicted RBP21.08■□□□□ 0.97
CCDC88B-207ENST00000479965 FAM184BQ9ULE4 1060 aa21.08■□□□□ 0.97
CCDC88B-207ENST00000479965 TBX22Q9Y458 520 aa21.08■□□□□ 0.97
CCDC88B-207ENST00000479965 KRT86O43790 486 aa21.08■□□□□ 0.96
CCDC88B-207ENST00000479965 GSCP56915 257 aaPredicted RBP21.08■□□□□ 0.96
CCDC88B-207ENST00000479965 TCP11X2Q5H9J9 407 aa21.08■□□□□ 0.96
CCDC88B-207ENST00000479965 RNF187Q5TA31 235 aaPredicted RBP21.08■□□□□ 0.96
CCDC88B-207ENST00000479965 GBP6Q6ZN66 633 aa21.08■□□□□ 0.96
CCDC88B-207ENST00000479965 LACRTQ9GZZ8 138 aa21.08■□□□□ 0.96
CCDC88B-207ENST00000479965 TSPOAP1O95153 1857 aa21.07■□□□□ 0.96
CCDC88B-207ENST00000479965 CYP27A1Q02318 531 aa21.07■□□□□ 0.96
CCDC88B-207ENST00000479965 BANK1Q8NDB2 785 aa21.07■□□□□ 0.96
CCDC88B-207ENST00000479965 NELFBQ8WX92 580 aa21.07■□□□□ 0.96
CCDC88B-207ENST00000479965 ARL8AQ96BM9 186 aa21.07■□□□□ 0.96
CCDC88B-207ENST00000479965 RGPD2P0DJD1 1756 aa21.07■□□□□ 0.96
CCDC88B-207ENST00000479965 GRIN2DO15399 1336 aa21.07■□□□□ 0.96
CCDC88B-207ENST00000479965 IFNAR1P17181 557 aa21.07■□□□□ 0.96
CCDC88B-207ENST00000479965 FECHP22830 423 aa21.07■□□□□ 0.96
CCDC88B-207ENST00000479965 ZNF174Q15697 407 aa21.07■□□□□ 0.96
CCDC88B-207ENST00000479965 GPIHBP1Q8IV16 184 aa21.07■□□□□ 0.96
CCDC88B-207ENST00000479965 DMGDHQ9UI17 866 aaKnown RBP21.07■□□□□ 0.96
CCDC88B-207ENST00000479965 SEMA3EO15041 775 aa21.07■□□□□ 0.96
CCDC88B-207ENST00000479965 PAK1Q13153 545 aa21.07■□□□□ 0.96
CCDC88B-207ENST00000479965 LRRC1Q9BTT6 524 aa21.07■□□□□ 0.96
CCDC88B-207ENST00000479965 CEP83Q9Y592 693 aa21.07■□□□□ 0.96
CCDC88B-207ENST00000479965 MYCNP04198 464 aaPredicted RBP21.06■□□□□ 0.96
CCDC88B-207ENST00000479965 TRIM14Q14142 442 aa21.06■□□□□ 0.96
CCDC88B-207ENST00000479965 PCMTD1Q96MG8 357 aaPredicted RBP21.06■□□□□ 0.96
CCDC88B-207ENST00000479965 LIMA1Q9UHB6 759 aaKnown RBP21.06■□□□□ 0.96
CCDC88B-207ENST00000479965 TDO2P48775 406 aa21.06■□□□□ 0.96
CCDC88B-207ENST00000479965 ZC3H6P61129 1189 aaKnown RBP21.06■□□□□ 0.96
CCDC88B-207ENST00000479965 PAPD7Q5XG87 772 aaKnown RBP21.06■□□□□ 0.96
CCDC88B-207ENST00000479965 FAM212AQ96EL1 285 aa21.06■□□□□ 0.96
CCDC88B-207ENST00000479965 CABS1Q96KC9 395 aa21.06■□□□□ 0.96
CCDC88B-207ENST00000479965 RPGRIP1Q96KN7 1286 aa21.06■□□□□ 0.96
CCDC88B-207ENST00000479965 CD248Q9HCU0 757 aa21.06■□□□□ 0.96
CCDC88B-207ENST00000479965 SUFUQ9UMX1 484 aa21.06■□□□□ 0.96
CCDC88B-207ENST00000479965 MAP3K15Q6ZN16 1313 aa21.06■□□□□ 0.96
CCDC88B-207ENST00000479965 RCCD1A6NED2 376 aa21.05■□□□□ 0.96
CCDC88B-207ENST00000479965 SMCR8Q8TEV9 937 aaPredicted RBP21.05■□□□□ 0.96
CCDC88B-207ENST00000479965 SMARCAL1Q9NZC9 954 aa21.05■□□□□ 0.96
CCDC88B-207ENST00000479965 NWD2Q9ULI1 1742 aa21.05■□□□□ 0.96
CCDC88B-207ENST00000479965 TRIM49BA6NDI0 452 aa21.05■□□□□ 0.96
CCDC88B-207ENST00000479965 MCAMP43121 646 aa21.05■□□□□ 0.96
CCDC88B-207ENST00000479965 SPAG1Q07617 926 aa21.05■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms