RNA–Protein interactions for RNA: ENST00000474038.1

LIMS1-212, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene LIMS1, Length 679 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-212ENST00000474038 PARP14Q460N5 1801 aa17.99■□□□□ 0.47
LIMS1-212ENST00000474038 RLFQ13129 1914 aa17.99■□□□□ 0.47
LIMS1-212ENST00000474038 GRK4P32298 578 aa17.98■□□□□ 0.47
LIMS1-212ENST00000474038 GCLCP48506 637 aaPredicted RBP17.98■□□□□ 0.47
LIMS1-212ENST00000474038 IRX3P78415 501 aaPredicted RBP17.98■□□□□ 0.47
LIMS1-212ENST00000474038 ICA1Q05084 483 aa17.98■□□□□ 0.47
LIMS1-212ENST00000474038 PDE4BQ07343 736 aa17.98■□□□□ 0.47
LIMS1-212ENST00000474038 MTFR1Q15390 333 aa17.98■□□□□ 0.47
LIMS1-212ENST00000474038 ZNF444Q8N0Y2 327 aaPredicted RBP17.98■□□□□ 0.47
LIMS1-212ENST00000474038 KANSL2Q9H9L4 492 aa17.98■□□□□ 0.47
LIMS1-212ENST00000474038 DDX52Q9Y2R4 599 aaKnown RBP eCLIP17.98■□□□□ 0.47
LIMS1-212ENST00000474038 TACC3Q9Y6A5 838 aa17.98■□□□□ 0.47
LIMS1-212ENST00000474038 PEX10O60683 326 aa17.97■□□□□ 0.47
LIMS1-212ENST00000474038 HOXA7P31268 230 aaPredicted RBP17.97■□□□□ 0.47
LIMS1-212ENST00000474038 FLT3LGP49771 235 aa17.97■□□□□ 0.47
LIMS1-212ENST00000474038 USP14P54578 494 aa17.97■□□□□ 0.47
LIMS1-212ENST00000474038 P2RX7Q99572 595 aaKnown RBP17.97■□□□□ 0.47
LIMS1-212ENST00000474038 ARHGEF10LQ9HCE6 1279 aa17.97■□□□□ 0.47
LIMS1-212ENST00000474038 INCENPQ9NQS7 918 aa17.97■□□□□ 0.47
LIMS1-212ENST00000474038 RAD50Q92878 1312 aa17.97■□□□□ 0.47
LIMS1-212ENST00000474038 EEF2P13639 858 aaKnown RBP17.96■□□□□ 0.47
LIMS1-212ENST00000474038 BMP2KLQ5H9B9 411 aa17.96■□□□□ 0.47
LIMS1-212ENST00000474038 RUFY2Q8WXA3 655 aa17.96■□□□□ 0.47
LIMS1-212ENST00000474038 DSCC1Q9BVC3 393 aa17.96■□□□□ 0.47
LIMS1-212ENST00000474038 TMX2Q9Y320 296 aa17.96■□□□□ 0.47
LIMS1-212ENST00000474038 IGKV6D-41A0A0C4DH26 115 aa17.95■□□□□ 0.46
LIMS1-212ENST00000474038 FGRP09769 529 aa17.95■□□□□ 0.46
LIMS1-212ENST00000474038 VCAM1P19320 739 aa17.95■□□□□ 0.46
LIMS1-212ENST00000474038 HAND2P61296 217 aa17.95■□□□□ 0.46
LIMS1-212ENST00000474038 HERVK_113P62684 666 aa17.95■□□□□ 0.46
LIMS1-212ENST00000474038 KIAA1755Q5JYT7 1200 aa17.95■□□□□ 0.46
LIMS1-212ENST00000474038 SLAIN1Q8ND83 568 aa17.95■□□□□ 0.46
LIMS1-212ENST00000474038 NBPF3Q9H094 633 aa17.95■□□□□ 0.46
LIMS1-212ENST00000474038 TXNRD2Q9NNW7 524 aa17.95■□□□□ 0.46
LIMS1-212ENST00000474038 BIN2Q9UBW5 565 aaPredicted RBP17.95■□□□□ 0.46
LIMS1-212ENST00000474038 PLIN4Q96Q06 1357 aa17.94■□□□□ 0.46
LIMS1-212ENST00000474038 ORC4O43929 436 aa17.94■□□□□ 0.46
LIMS1-212ENST00000474038 ADCY3O60266 1144 aa17.94■□□□□ 0.46
LIMS1-212ENST00000474038 ELNP15502 786 aa17.94■□□□□ 0.46
LIMS1-212ENST00000474038 TFAP4Q01664 338 aa17.94■□□□□ 0.46
LIMS1-212ENST00000474038 ATP2B2Q01814 1243 aa17.94■□□□□ 0.46
LIMS1-212ENST00000474038 FAM47AQ5JRC9 791 aa17.94■□□□□ 0.46
LIMS1-212ENST00000474038 NEDD1Q8NHV4 660 aa17.94■□□□□ 0.46
LIMS1-212ENST00000474038 COA7Q96BR5 231 aa17.94■□□□□ 0.46
LIMS1-212ENST00000474038 SH2D4AQ9H788 454 aa17.94■□□□□ 0.46
LIMS1-212ENST00000474038 MORF4L1Q9UBU8 362 aa17.94■□□□□ 0.46
LIMS1-212ENST00000474038 COL11A1P12107 1806 aaPredicted RBP17.93■□□□□ 0.46
LIMS1-212ENST00000474038 USP17L15C9J2P7 530 aa17.93■□□□□ 0.46
LIMS1-212ENST00000474038 USP17L13C9JLJ4 530 aa17.93■□□□□ 0.46
LIMS1-212ENST00000474038 USP17L11C9JVI0 530 aa17.93■□□□□ 0.46
LIMS1-212ENST00000474038 USP17L18D6R9N7 530 aa17.93■□□□□ 0.46
LIMS1-212ENST00000474038 USP17L22D6RA61 530 aa17.93■□□□□ 0.46
LIMS1-212ENST00000474038 USP17L17D6RBQ6 530 aa17.93■□□□□ 0.46
LIMS1-212ENST00000474038 USP17L19D6RCP7 530 aa17.93■□□□□ 0.46
LIMS1-212ENST00000474038 USP17L20D6RJB6 530 aa17.93■□□□□ 0.46
LIMS1-212ENST00000474038 SGSM2O43147 1006 aa17.93■□□□□ 0.46
LIMS1-212ENST00000474038 TSPY3P0CV98 308 aa17.93■□□□□ 0.46
LIMS1-212ENST00000474038 TSPY8P0CW00 308 aa17.93■□□□□ 0.46
LIMS1-212ENST00000474038 CCL5P13501 91 aa17.93■□□□□ 0.46
LIMS1-212ENST00000474038 USP17L24Q0WX57 530 aa17.93■□□□□ 0.46
LIMS1-212ENST00000474038 POTEEQ6S8J3 1075 aa17.93■□□□□ 0.46
LIMS1-212ENST00000474038 CATSPERGQ6ZRH7 1159 aa17.93■□□□□ 0.46
LIMS1-212ENST00000474038 CEP95Q96GE4 821 aa17.93■□□□□ 0.46
LIMS1-212ENST00000474038 VCPKMTQ9H867 229 aa17.93■□□□□ 0.46
LIMS1-212ENST00000474038 NYAP2Q9P242 653 aa17.93■□□□□ 0.46
LIMS1-212ENST00000474038 ZNF213O14771 459 aa17.92■□□□□ 0.46
LIMS1-212ENST00000474038 UBXN2AP68543 259 aa17.92■□□□□ 0.46
LIMS1-212ENST00000474038 IRF5Q13568 498 aa17.92■□□□□ 0.46
LIMS1-212ENST00000474038 PRPF38BQ5VTL8 546 aaKnown RBP17.92■□□□□ 0.46
LIMS1-212ENST00000474038 TBC1D10CQ8IV04 446 aa17.92■□□□□ 0.46
LIMS1-212ENST00000474038 SHISA4Q96DD7 197 aa17.92■□□□□ 0.46
LIMS1-212ENST00000474038 PAGR1Q9BTK6 254 aa17.92■□□□□ 0.46
LIMS1-212ENST00000474038 RPAP3Q9H6T3 665 aaPredicted RBP17.92■□□□□ 0.46
LIMS1-212ENST00000474038 MTMR4Q9NYA4 1195 aa17.92■□□□□ 0.46
LIMS1-212ENST00000474038 RBPJLQ9UBG7 517 aa17.92■□□□□ 0.46
LIMS1-212ENST00000474038 TSPY2A6NKD2 308 aa17.91■□□□□ 0.46
LIMS1-212ENST00000474038 RANBP6O60518 1105 aaKnown RBP17.91■□□□□ 0.46
LIMS1-212ENST00000474038 INHAP05111 366 aa17.91■□□□□ 0.46
LIMS1-212ENST00000474038 PTH1RQ03431 593 aa17.91■□□□□ 0.46
LIMS1-212ENST00000474038 Q3C1V9 767 aa17.91■□□□□ 0.46
LIMS1-212ENST00000474038 AKNAD1Q5T1N1 836 aa17.91■□□□□ 0.46
LIMS1-212ENST00000474038 SPICE1Q8N0Z3 855 aa17.91■□□□□ 0.46
LIMS1-212ENST00000474038 GPRC5AQ8NFJ5 357 aa17.91■□□□□ 0.46
LIMS1-212ENST00000474038 STAG1Q8WVM7 1258 aa17.91■□□□□ 0.46
LIMS1-212ENST00000474038 LPAR1Q92633 364 aa17.91■□□□□ 0.46
LIMS1-212ENST00000474038 RNF208Q9H0X6 261 aa17.91■□□□□ 0.46
LIMS1-212ENST00000474038 UNC93B1Q9H1C4 597 aa17.91■□□□□ 0.46
LIMS1-212ENST00000474038 TOMM22Q9NS69 142 aa17.91■□□□□ 0.46
LIMS1-212ENST00000474038 CLIP2Q9UDT6 1046 aa17.91■□□□□ 0.46
LIMS1-212ENST00000474038 CTNNA3Q9UI47 895 aa17.91■□□□□ 0.46
LIMS1-212ENST00000474038 A0A0G2JMZ2 1700 aa17.9■□□□□ 0.46
LIMS1-212ENST00000474038 PCP11498 1178 aaKnown RBP17.9■□□□□ 0.46
LIMS1-212ENST00000474038 ERVK-9P63128 1117 aa17.9■□□□□ 0.46
LIMS1-212ENST00000474038 ERVK-24P63145 666 aa17.9■□□□□ 0.46
LIMS1-212ENST00000474038 RRP12Q5JTH9 1297 aaKnown RBP17.9■□□□□ 0.46
LIMS1-212ENST00000474038 MFSD6Q6ZSS7 791 aa17.9■□□□□ 0.46
LIMS1-212ENST00000474038 PXYLP1Q8TE99 480 aa17.9■□□□□ 0.46
LIMS1-212ENST00000474038 MKL1Q969V6 931 aa17.9■□□□□ 0.46
LIMS1-212ENST00000474038 GOPCQ9HD26 462 aa17.9■□□□□ 0.46
LIMS1-212ENST00000474038 IL17RBQ9NRM6 502 aa17.9■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms