RNA–Protein interactions for RNA: ENST00000473191.1

USP40-212, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 590 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-212ENST00000473191 GTF3C2Q8WUA4 911 aaPredicted RBP20.03■□□□□ 0.8
USP40-212ENST00000473191 SOCS4Q8WXH5 440 aa20.03■□□□□ 0.8
USP40-212ENST00000473191 GPATCH3Q96I76 525 aa20.03■□□□□ 0.8
USP40-212ENST00000473191 TANGO6Q9C0B7 1094 aa20.03■□□□□ 0.8
USP40-212ENST00000473191 COLQQ9Y215 455 aaPredicted RBP20.03■□□□□ 0.8
USP40-212ENST00000473191 TMX2Q9Y320 296 aa20.03■□□□□ 0.8
USP40-212ENST00000473191 RPTORQ8N122 1335 aa20.02■□□□□ 0.8
USP40-212ENST00000473191 EEF2P13639 858 aaKnown RBP20.02■□□□□ 0.8
USP40-212ENST00000473191 PRKAR2AP13861 404 aaKnown RBP20.02■□□□□ 0.8
USP40-212ENST00000473191 CACNB2Q08289 660 aaPredicted RBP20.02■□□□□ 0.8
USP40-212ENST00000473191 WDR78Q5VTH9 848 aa20.02■□□□□ 0.8
USP40-212ENST00000473191 CCAR1Q8IX12 1150 aaKnown RBP20.02■□□□□ 0.8
USP40-212ENST00000473191 PAWRQ96IZ0 340 aaKnown RBP20.02■□□□□ 0.8
USP40-212ENST00000473191 HMX1Q9NP08 348 aaPredicted RBP20.02■□□□□ 0.8
USP40-212ENST00000473191 PCDH10Q9P2E7 1040 aa20.02■□□□□ 0.8
USP40-212ENST00000473191 PARP14Q460N5 1801 aa20.02■□□□□ 0.79
USP40-212ENST00000473191 TTC41PQ6P2S7 1318 aa20.02■□□□□ 0.79
USP40-212ENST00000473191 MINDY4BA8MYZ0 360 aa20.01■□□□□ 0.79
USP40-212ENST00000473191 XRCC5P13010 732 aaKnown RBP20.01■□□□□ 0.79
USP40-212ENST00000473191 CCND3P30281 292 aaPredicted RBP20.01■□□□□ 0.79
USP40-212ENST00000473191 ATP2B2Q01814 1243 aa20.01■□□□□ 0.79
USP40-212ENST00000473191 COG2Q14746 738 aa20.01■□□□□ 0.79
USP40-212ENST00000473191 NPLOC4Q8TAT6 608 aa20.01■□□□□ 0.79
USP40-212ENST00000473191 VCPKMTQ9H867 229 aa20.01■□□□□ 0.79
USP40-212ENST00000473191 ARPP21Q9UBL0 812 aaPredicted RBP20.01■□□□□ 0.79
USP40-212ENST00000473191 ALPK3Q96L96 1907 aa20.01■□□□□ 0.79
USP40-212ENST00000473191 GREB1LQ9C091 1923 aaPredicted RBP20.01■□□□□ 0.79
USP40-212ENST00000473191 RASA1P20936 1047 aa20■□□□□ 0.79
USP40-212ENST00000473191 PTPREP23469 700 aa20■□□□□ 0.79
USP40-212ENST00000473191 MAP2K5Q13163 448 aa20■□□□□ 0.79
USP40-212ENST00000473191 SBK1Q52WX2 424 aa20■□□□□ 0.79
USP40-212ENST00000473191 SAMD1Q6SPF0 538 aaPredicted RBP20■□□□□ 0.79
USP40-212ENST00000473191 ATG4CQ96DT6 458 aa20■□□□□ 0.79
USP40-212ENST00000473191 DDRGK1Q96HY6 314 aa20■□□□□ 0.79
USP40-212ENST00000473191 CCDC17Q96LX7 622 aa20■□□□□ 0.79
USP40-212ENST00000473191 MOV10L1Q9BXT6 1211 aaKnown RBP20■□□□□ 0.79
USP40-212ENST00000473191 FBXO28Q9NVF7 368 aa20■□□□□ 0.79
USP40-212ENST00000473191 ZKSCAN1P17029 563 aaPredicted RBP19.99■□□□□ 0.79
USP40-212ENST00000473191 MX1P20591 662 aa19.99■□□□□ 0.79
USP40-212ENST00000473191 RGS2P41220 211 aa19.99■□□□□ 0.79
USP40-212ENST00000473191 ANKRD45Q5TZF3 282 aa19.99■□□□□ 0.79
USP40-212ENST00000473191 AMOTL1Q8IY63 956 aa19.99■□□□□ 0.79
USP40-212ENST00000473191 APBA2Q99767 749 aa19.99■□□□□ 0.79
USP40-212ENST00000473191 ARHGEF10LQ9HCE6 1279 aa19.99■□□□□ 0.79
USP40-212ENST00000473191 FOXP2O15409 715 aa19.98■□□□□ 0.79
USP40-212ENST00000473191 PRDM1O75626 825 aa19.98■□□□□ 0.79
USP40-212ENST00000473191 FLOT1O75955 427 aa19.98■□□□□ 0.79
USP40-212ENST00000473191 DSG3P32926 999 aa19.98■□□□□ 0.79
USP40-212ENST00000473191 CCNA1P78396 465 aa19.98■□□□□ 0.79
USP40-212ENST00000473191 GRB14Q14449 540 aa19.98■□□□□ 0.79
USP40-212ENST00000473191 CCDC129Q6ZRS4 1044 aa19.98■□□□□ 0.79
USP40-212ENST00000473191 SPATC1LQ9H0A9 340 aa19.98■□□□□ 0.79
USP40-212ENST00000473191 CWC22Q9HCG8 908 aaKnown RBP19.98■□□□□ 0.79
USP40-212ENST00000473191 COL11A1P12107 1806 aaPredicted RBP19.97■□□□□ 0.79
USP40-212ENST00000473191 ROBO3Q96MS0 1386 aa19.97■□□□□ 0.79
USP40-212ENST00000473191 GLRX3O76003 335 aaKnown RBP19.97■□□□□ 0.79
USP40-212ENST00000473191 ZFYP08048 801 aaPredicted RBP19.97■□□□□ 0.79
USP40-212ENST00000473191 ERCC3P19447 782 aa19.97■□□□□ 0.79
USP40-212ENST00000473191 IFNL3Q8IZI9 196 aa19.97■□□□□ 0.79
USP40-212ENST00000473191 LPAR1Q92633 364 aa19.97■□□□□ 0.79
USP40-212ENST00000473191 GCC1Q96CN9 775 aa19.97■□□□□ 0.79
USP40-212ENST00000473191 NUP88Q99567 741 aaPredicted RBP19.97■□□□□ 0.79
USP40-212ENST00000473191 FSD1Q9BTV5 496 aa19.97■□□□□ 0.79
USP40-212ENST00000473191 KANSL2Q9H9L4 492 aa19.97■□□□□ 0.79
USP40-212ENST00000473191 HOXC10Q9NYD6 342 aa19.97■□□□□ 0.79
USP40-212ENST00000473191 SLC15A5A6NIM6 579 aa19.96■□□□□ 0.79
USP40-212ENST00000473191 PATL2C9JE40 543 aaKnown RBP19.96■□□□□ 0.79
USP40-212ENST00000473191 ERC2O15083 957 aa19.96■□□□□ 0.79
USP40-212ENST00000473191 APPP05067 770 aa19.96■□□□□ 0.79
USP40-212ENST00000473191 TMEM132BQ14DG7 1078 aa19.96■□□□□ 0.79
USP40-212ENST00000473191 ZMYM1Q5SVZ6 1142 aa19.96■□□□□ 0.79
USP40-212ENST00000473191 LHX8Q68G74 356 aa19.96■□□□□ 0.79
USP40-212ENST00000473191 GIMAP6Q6P9H5 292 aa19.96■□□□□ 0.79
USP40-212ENST00000473191 CHRDL2Q6WN34 429 aa19.96■□□□□ 0.79
USP40-212ENST00000473191 HTATIP2Q9BUP3 242 aa19.96■□□□□ 0.79
USP40-212ENST00000473191 OGDHLQ9ULD0 1010 aa19.96■□□□□ 0.79
USP40-212ENST00000473191 WDR46O15213 610 aaKnown RBP19.95■□□□□ 0.78
USP40-212ENST00000473191 RAD21O60216 631 aa19.95■□□□□ 0.78
USP40-212ENST00000473191 COBLO75128 1261 aa19.95■□□□□ 0.78
USP40-212ENST00000473191 CYP2C19P33261 490 aa19.95■□□□□ 0.78
USP40-212ENST00000473191 TDO2P48775 406 aa19.95■□□□□ 0.78
USP40-212ENST00000473191 PLS1Q14651 629 aa19.95■□□□□ 0.78
USP40-212ENST00000473191 FAM83BQ5T0W9 1011 aa19.95■□□□□ 0.78
USP40-212ENST00000473191 TRPV1Q8NER1 839 aa19.95■□□□□ 0.78
USP40-212ENST00000473191 FRMPD3Q5JV73 1810 aa19.95■□□□□ 0.78
USP40-212ENST00000473191 IGKV6D-41A0A0C4DH26 115 aa19.94■□□□□ 0.78
USP40-212ENST00000473191 IGHA2P01877 340 aa19.94■□□□□ 0.78
USP40-212ENST00000473191 ADORA2AP29274 412 aa19.94■□□□□ 0.78
USP40-212ENST00000473191 HDAC1Q13547 482 aaPredicted RBP19.94■□□□□ 0.78
USP40-212ENST00000473191 NECAB2Q7Z6G3 386 aa19.94■□□□□ 0.78
USP40-212ENST00000473191 MKNK2Q9HBH9 465 aa19.94■□□□□ 0.78
USP40-212ENST00000473191 INCENPQ9NQS7 918 aa19.94■□□□□ 0.78
USP40-212ENST00000473191 RBM27Q9P2N5 1060 aaKnown RBP19.94■□□□□ 0.78
USP40-212ENST00000473191 TACC3Q9Y6A5 838 aa19.94■□□□□ 0.78
USP40-212ENST00000473191 PFASO15067 1338 aa19.94■□□□□ 0.78
USP40-212ENST00000473191 HOXC6P09630 235 aa19.93■□□□□ 0.78
USP40-212ENST00000473191 FXR1P51114 621 aaKnown RBP eCLIP19.93■□□□□ 0.78
USP40-212ENST00000473191 VPS53Q5VIR6 699 aa19.93■□□□□ 0.78
USP40-212ENST00000473191 NCAPG2Q86XI2 1143 aa19.93■□□□□ 0.78
USP40-212ENST00000473191 TRMT44Q8IYL2 757 aaKnown RBP19.93■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms