RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 ERC2O15083 957 aa18.86■□□□□ 0.61
CCDC88B-205ENST00000472524 RNF113AO15541 343 aaKnown RBP18.86■□□□□ 0.61
CCDC88B-205ENST00000472524 PRKAR2AP13861 404 aaKnown RBP18.86■□□□□ 0.61
CCDC88B-205ENST00000472524 MAP3K21Q5TCX8 1036 aa18.86■□□□□ 0.61
CCDC88B-205ENST00000472524 CTR9Q6PD62 1173 aa18.86■□□□□ 0.61
CCDC88B-205ENST00000472524 C16orf86Q6ZW13 317 aa18.86■□□□□ 0.61
CCDC88B-205ENST00000472524 C7orf61Q8IZ16 206 aa18.86■□□□□ 0.61
CCDC88B-205ENST00000472524 SOCS4Q8WXH5 440 aa18.86■□□□□ 0.61
CCDC88B-205ENST00000472524 STRBPQ96SI9 672 aaKnown RBP18.86■□□□□ 0.61
CCDC88B-205ENST00000472524 CWC22Q9HCG8 908 aaKnown RBP18.86■□□□□ 0.61
CCDC88B-205ENST00000472524 ARPP21Q9UBL0 812 aaPredicted RBP18.86■□□□□ 0.61
CCDC88B-205ENST00000472524 ZBTB47Q9UFB7 747 aaPredicted RBP18.86■□□□□ 0.61
CCDC88B-205ENST00000472524 GREB1LQ9C091 1923 aaPredicted RBP18.86■□□□□ 0.61
CCDC88B-205ENST00000472524 M0R2C6 588 aa18.85■□□□□ 0.61
CCDC88B-205ENST00000472524 SOX1O00570 391 aaPredicted RBP18.85■□□□□ 0.61
CCDC88B-205ENST00000472524 CNMDO75829 334 aa18.85■□□□□ 0.61
CCDC88B-205ENST00000472524 XRCC5P13010 732 aaKnown RBP18.85■□□□□ 0.61
CCDC88B-205ENST00000472524 MAPK4P31152 587 aa18.85■□□□□ 0.61
CCDC88B-205ENST00000472524 ICA1Q05084 483 aa18.85■□□□□ 0.61
CCDC88B-205ENST00000472524 STK11IPQ8N1F8 1099 aa18.85■□□□□ 0.61
CCDC88B-205ENST00000472524 PI4K2BQ8TCG2 481 aa18.85■□□□□ 0.61
CCDC88B-205ENST00000472524 USP6NLQ92738 828 aa18.85■□□□□ 0.61
CCDC88B-205ENST00000472524 ARHGEF10LQ9HCE6 1279 aa18.85■□□□□ 0.61
CCDC88B-205ENST00000472524 OGDHLQ9ULD0 1010 aa18.85■□□□□ 0.61
CCDC88B-205ENST00000472524 RABGAP1Q9Y3P9 1069 aa18.85■□□□□ 0.61
CCDC88B-205ENST00000472524 A0A0G2JMZ2 1700 aa18.85■□□□□ 0.61
CCDC88B-205ENST00000472524 GPAA1O43292 621 aa18.84■□□□□ 0.61
CCDC88B-205ENST00000472524 GLRX3O76003 335 aaKnown RBP18.84■□□□□ 0.61
CCDC88B-205ENST00000472524 ZFYP08048 801 aaPredicted RBP18.84■□□□□ 0.61
CCDC88B-205ENST00000472524 MX1P20591 662 aa18.84■□□□□ 0.61
CCDC88B-205ENST00000472524 CCL14Q16627 93 aa18.84■□□□□ 0.61
CCDC88B-205ENST00000472524 ANKRD45Q5TZF3 282 aa18.84■□□□□ 0.61
CCDC88B-205ENST00000472524 GPR142Q7Z601 462 aa18.84■□□□□ 0.61
CCDC88B-205ENST00000472524 CCDC17Q96LX7 622 aa18.84■□□□□ 0.61
CCDC88B-205ENST00000472524 TANGO6Q9C0B7 1094 aa18.84■□□□□ 0.61
CCDC88B-205ENST00000472524 NBPF3Q9H094 633 aa18.84■□□□□ 0.61
CCDC88B-205ENST00000472524 C11orf49Q9H6J7 331 aa18.84■□□□□ 0.61
CCDC88B-205ENST00000472524 ZMYND8Q9ULU4 1186 aaPredicted RBP18.84■□□□□ 0.61
CCDC88B-205ENST00000472524 ZNFX1Q9P2E3 1918 aaKnown RBP18.83■□□□□ 0.6
CCDC88B-205ENST00000472524 SPDYE16A6NNV3 312 aaPredicted RBP18.83■□□□□ 0.6
CCDC88B-205ENST00000472524 GSG1L2A8MUP6 293 aa18.83■□□□□ 0.6
CCDC88B-205ENST00000472524 MINDY4BA8MYZ0 360 aa18.83■□□□□ 0.6
CCDC88B-205ENST00000472524 ZKSCAN1P17029 563 aaPredicted RBP18.83■□□□□ 0.6
CCDC88B-205ENST00000472524 ATP2B2Q01814 1243 aa18.83■□□□□ 0.6
CCDC88B-205ENST00000472524 CACNB2Q08289 660 aaPredicted RBP18.83■□□□□ 0.6
CCDC88B-205ENST00000472524 LRRFIP1Q32MZ4 808 aaKnown RBP18.83■□□□□ 0.6
CCDC88B-205ENST00000472524 KIAA1755Q5JYT7 1200 aa18.83■□□□□ 0.6
CCDC88B-205ENST00000472524 MORN1Q5T089 497 aa18.83■□□□□ 0.6
CCDC88B-205ENST00000472524 WDR78Q5VTH9 848 aa18.83■□□□□ 0.6
CCDC88B-205ENST00000472524 PLEKHH3Q7Z736 793 aa18.83■□□□□ 0.6
CCDC88B-205ENST00000472524 FSD1Q9BTV5 496 aa18.83■□□□□ 0.6
CCDC88B-205ENST00000472524 BTBD7Q9P203 1132 aa18.83■□□□□ 0.6
CCDC88B-205ENST00000472524 A0A1W2PPC1 479 aa18.82■□□□□ 0.6
CCDC88B-205ENST00000472524 CCNA1P78396 465 aa18.82■□□□□ 0.6
CCDC88B-205ENST00000472524 SPICE1Q8N0Z3 855 aa18.82■□□□□ 0.6
CCDC88B-205ENST00000472524 LRCH3Q96II8 777 aa18.82■□□□□ 0.6
CCDC88B-205ENST00000472524 SH2D4AQ9H788 454 aa18.82■□□□□ 0.6
CCDC88B-205ENST00000472524 EPB41L4AQ9HCS5 686 aaPredicted RBP18.82■□□□□ 0.6
CCDC88B-205ENST00000472524 ALPK3Q96L96 1907 aa18.82■□□□□ 0.6
CCDC88B-205ENST00000472524 PFASO15067 1338 aa18.81■□□□□ 0.6
CCDC88B-205ENST00000472524 APPP05067 770 aa18.81■□□□□ 0.6
CCDC88B-205ENST00000472524 SYN1P17600 705 aa18.81■□□□□ 0.6
CCDC88B-205ENST00000472524 CCND3P30281 292 aaPredicted RBP18.81■□□□□ 0.6
CCDC88B-205ENST00000472524 RGS2P41220 211 aa18.81■□□□□ 0.6
CCDC88B-205ENST00000472524 TDO2P48775 406 aa18.81■□□□□ 0.6
CCDC88B-205ENST00000472524 SBK1Q52WX2 424 aa18.81■□□□□ 0.6
CCDC88B-205ENST00000472524 GIMAP6Q6P9H5 292 aa18.81■□□□□ 0.6
CCDC88B-205ENST00000472524 SAMD1Q6SPF0 538 aaPredicted RBP18.81■□□□□ 0.6
CCDC88B-205ENST00000472524 LBX2Q6XYB7 198 aa18.81■□□□□ 0.6
CCDC88B-205ENST00000472524 SIAH1Q8IUQ4 282 aa18.81■□□□□ 0.6
CCDC88B-205ENST00000472524 SEC62Q99442 399 aaKnown RBP18.81■□□□□ 0.6
CCDC88B-205ENST00000472524 GDF15Q99988 308 aa18.81■□□□□ 0.6
CCDC88B-205ENST00000472524 TMX2Q9Y320 296 aa18.81■□□□□ 0.6
CCDC88B-205ENST00000472524 FRMPD3Q5JV73 1810 aa18.81■□□□□ 0.6
CCDC88B-205ENST00000472524 SALL3Q9BXA9 1300 aa18.8■□□□□ 0.6
CCDC88B-205ENST00000472524 EEF2P13639 858 aaKnown RBP18.8■□□□□ 0.6
CCDC88B-205ENST00000472524 GNAT2P19087 354 aa18.8■□□□□ 0.6
CCDC88B-205ENST00000472524 HDAC1Q13547 482 aaPredicted RBP18.8■□□□□ 0.6
CCDC88B-205ENST00000472524 COG2Q14746 738 aa18.8■□□□□ 0.6
CCDC88B-205ENST00000472524 TRMT44Q8IYL2 757 aaKnown RBP18.8■□□□□ 0.6
CCDC88B-205ENST00000472524 LPAR1Q92633 364 aa18.8■□□□□ 0.6
CCDC88B-205ENST00000472524 APBA2Q99767 749 aa18.8■□□□□ 0.6
CCDC88B-205ENST00000472524 VCPKMTQ9H867 229 aa18.8■□□□□ 0.6
CCDC88B-205ENST00000472524 MKNK2Q9HBH9 465 aa18.8■□□□□ 0.6
CCDC88B-205ENST00000472524 ROBO3Q96MS0 1386 aa18.8■□□□□ 0.6
CCDC88B-205ENST00000472524 RAD21O60216 631 aa18.79■□□□□ 0.6
CCDC88B-205ENST00000472524 LHX8Q68G74 356 aa18.79■□□□□ 0.6
CCDC88B-205ENST00000472524 KANSL2Q9H9L4 492 aa18.79■□□□□ 0.6
CCDC88B-205ENST00000472524 HOXC10Q9NYD6 342 aa18.79■□□□□ 0.6
CCDC88B-205ENST00000472524 FLRT1Q9NZU1 646 aa18.79■□□□□ 0.6
CCDC88B-205ENST00000472524 FLOT1O75955 427 aa18.78■□□□□ 0.6
CCDC88B-205ENST00000472524 COL6A1P12109 1028 aa18.78■□□□□ 0.6
CCDC88B-205ENST00000472524 RASA1P20936 1047 aa18.78■□□□□ 0.6
CCDC88B-205ENST00000472524 BMP8BP34820 402 aa18.78■□□□□ 0.6
CCDC88B-205ENST00000472524 MAP2K5Q13163 448 aa18.78■□□□□ 0.6
CCDC88B-205ENST00000472524 IVNS1ABPQ9Y6Y0 642 aa18.78■□□□□ 0.6
CCDC88B-205ENST00000472524 ZNF236Q9UL36 1845 aa18.77■□□□□ 0.6
CCDC88B-205ENST00000472524 PATL2C9JE40 543 aaKnown RBP18.77■□□□□ 0.6
CCDC88B-205ENST00000472524 WDR46O15213 610 aaKnown RBP18.77■□□□□ 0.6
CCDC88B-205ENST00000472524 PTPREP23469 700 aa18.77■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms