RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, human

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-209	ENST00000472044	ST13P5	Q8NFI4	369 aa	Predicted RBP	5.83	□□□□□ -1.48
PTCD3-209	ENST00000472044	ZNF669	Q96BR6	464 aa	Predicted RBP	5.83	□□□□□ -1.48
PTCD3-209	ENST00000472044	DEPDC7	Q96QD5	511 aa		5.83	□□□□□ -1.48
PTCD3-209	ENST00000472044	SPOCK3	Q9BQ16	436 aa		5.83	□□□□□ -1.48
PTCD3-209	ENST00000472044	KRTAP4-6	Q9BYQ5	205 aa		5.83	□□□□□ -1.48
PTCD3-209	ENST00000472044	PIF1	Q9H611	641 aa		5.83	□□□□□ -1.48
PTCD3-209	ENST00000472044	SNTG2	Q9NY99	539 aa		5.83	□□□□□ -1.48
PTCD3-209	ENST00000472044	GTF2IRD1	Q9UHL9	959 aa		5.83	□□□□□ -1.48
PTCD3-209	ENST00000472044	SHROOM4	Q9ULL8	1493 aa		5.83	□□□□□ -1.48
PTCD3-209	ENST00000472044	CNTNAP4	Q9C0A0	1308 aa		5.82	□□□□□ -1.48
PTCD3-209	ENST00000472044	FAM86C2P	A6NEL3	165 aa		5.82	□□□□□ -1.48
PTCD3-209	ENST00000472044	MSTN	O14793	375 aa		5.82	□□□□□ -1.48
PTCD3-209	ENST00000472044	IGLV1-40	P01703	118 aa		5.82	□□□□□ -1.48
PTCD3-209	ENST00000472044	IGHA1	P01876	353 aa		5.82	□□□□□ -1.48
PTCD3-209	ENST00000472044	F13B	P05160	661 aa		5.82	□□□□□ -1.48
PTCD3-209	ENST00000472044	ZNF865	P0CJ78	1059 aa	Predicted RBP	5.82	□□□□□ -1.48
PTCD3-209	ENST00000472044	CHMP4BP1	P59074	171 aa		5.82	□□□□□ -1.48
PTCD3-209	ENST00000472044	DOC2B	Q14184	412 aa		5.82	□□□□□ -1.48
PTCD3-209	ENST00000472044	SFRP5	Q5T4F7	317 aa		5.82	□□□□□ -1.48
PTCD3-209	ENST00000472044	MRM1	Q6IN84	353 aa	Known RBP	5.82	□□□□□ -1.48
PTCD3-209	ENST00000472044	KIAA1211L	Q6NV74	962 aa		5.82	□□□□□ -1.48
PTCD3-209	ENST00000472044	MRFAP1L1	Q96HT8	127 aa		5.82	□□□□□ -1.48
PTCD3-209	ENST00000472044	MFSD14A	Q96MC6	490 aa		5.82	□□□□□ -1.48
PTCD3-209	ENST00000472044	HEXIM2	Q96MH2	286 aa	Known RBP	5.82	□□□□□ -1.48
PTCD3-209	ENST00000472044	SRPK1	Q96SB4	655 aa	Known RBP	5.82	□□□□□ -1.48
PTCD3-209	ENST00000472044	METTL22	Q9BUU2	404 aa	Predicted RBP	5.82	□□□□□ -1.48
PTCD3-209	ENST00000472044	EPN3	Q9H201	632 aa		5.82	□□□□□ -1.48
PTCD3-209	ENST00000472044	MKNK2	Q9HBH9	465 aa		5.82	□□□□□ -1.48
PTCD3-209	ENST00000472044	PRDM5	Q9NQX1	630 aa	Predicted RBP	5.82	□□□□□ -1.48
PTCD3-209	ENST00000472044	TPX2	Q9ULW0	747 aa	Known RBP	5.82	□□□□□ -1.48
PTCD3-209	ENST00000472044	PCDHB10	Q9UN67	800 aa		5.82	□□□□□ -1.48
PTCD3-209	ENST00000472044	LOC105371045	A0A1W2PR82	267 aa		5.81	□□□□□ -1.48
PTCD3-209	ENST00000472044	FAM221B	A6H8Z2	402 aa		5.81	□□□□□ -1.48
PTCD3-209	ENST00000472044	FAM170B	A6NMN3	283 aa		5.81	□□□□□ -1.48
PTCD3-209	ENST00000472044		B2RBV5	119 aa		5.81	□□□□□ -1.48
PTCD3-209	ENST00000472044	FST	P19883	344 aa		5.81	□□□□□ -1.48
PTCD3-209	ENST00000472044	BMS1	Q14692	1282 aa	Known RBP	5.81	□□□□□ -1.48
PTCD3-209	ENST00000472044	NBPF9	Q3BBW0	867 aa		5.81	□□□□□ -1.48
PTCD3-209	ENST00000472044	AXDND1	Q5T1B0	1012 aa	Predicted RBP	5.81	□□□□□ -1.48
PTCD3-209	ENST00000472044	DUSP27	Q5VZP5	1158 aa		5.81	□□□□□ -1.48
PTCD3-209	ENST00000472044	ZNF765	Q7L2R6	523 aa		5.81	□□□□□ -1.48
PTCD3-209	ENST00000472044	EEPD1	Q7L9B9	569 aa		5.81	□□□□□ -1.48
PTCD3-209	ENST00000472044	SHISA5	Q8N114	240 aa		5.81	□□□□□ -1.48
PTCD3-209	ENST00000472044	PRR13	Q9NZ81	148 aa		5.81	□□□□□ -1.48
PTCD3-209	ENST00000472044	CBFA2T2	O43439	604 aa		5.8	□□□□□ -1.48
PTCD3-209	ENST00000472044	NAT2	P11245	290 aa		5.8	□□□□□ -1.48
PTCD3-209	ENST00000472044	AUH	Q13825	339 aa	Known RBP	5.8	□□□□□ -1.48
PTCD3-209	ENST00000472044	GIMAP6	Q6P9H5	292 aa		5.8	□□□□□ -1.48
PTCD3-209	ENST00000472044	CCDC144CP	Q8IYA2	1237 aa		5.8	□□□□□ -1.48
PTCD3-209	ENST00000472044	C7orf61	Q8IZ16	206 aa		5.8	□□□□□ -1.48
PTCD3-209	ENST00000472044	FBXL6	Q8N531	539 aa		5.8	□□□□□ -1.48
PTCD3-209	ENST00000472044	PIWIL2	Q8TC59	973 aa	Known RBP	5.8	□□□□□ -1.48
PTCD3-209	ENST00000472044		Q96M66	194 aa		5.8	□□□□□ -1.48
PTCD3-209	ENST00000472044	HAUS7	Q99871	368 aa		5.8	□□□□□ -1.48
PTCD3-209	ENST00000472044	MKRN2	Q9H000	416 aa	Known RBP	5.8	□□□□□ -1.48
PTCD3-209	ENST00000472044	KLHL25	Q9H0H3	589 aa		5.8	□□□□□ -1.48
PTCD3-209	ENST00000472044	SUSD2	Q9UGT4	822 aa		5.8	□□□□□ -1.48
PTCD3-209	ENST00000472044		A0A087WZG4	1122 aa		5.79	□□□□□ -1.48
PTCD3-209	ENST00000472044	TLDC2	A0PJX2	215 aa		5.79	□□□□□ -1.48
PTCD3-209	ENST00000472044	ANKRD34B	A5PLL1	514 aa		5.79	□□□□□ -1.48
PTCD3-209	ENST00000472044	SHOX	O15266	292 aa		5.79	□□□□□ -1.48
PTCD3-209	ENST00000472044	DYRK3	O43781	588 aa		5.79	□□□□□ -1.48
PTCD3-209	ENST00000472044	SUSD5	O60279	629 aa		5.79	□□□□□ -1.48
PTCD3-209	ENST00000472044	TP53	P04637	393 aa	Predicted RBP	5.79	□□□□□ -1.48
PTCD3-209	ENST00000472044	CD247	P20963	164 aa		5.79	□□□□□ -1.48
PTCD3-209	ENST00000472044	TDRD10	Q5VZ19	366 aa	Known RBP	5.79	□□□□□ -1.48
PTCD3-209	ENST00000472044	DCAF15	Q66K64	600 aa		5.79	□□□□□ -1.48
PTCD3-209	ENST00000472044	JMY	Q8N9B5	988 aa		5.79	□□□□□ -1.48
PTCD3-209	ENST00000472044	SHKBP1	Q8TBC3	707 aa		5.79	□□□□□ -1.48
PTCD3-209	ENST00000472044	ZNF512B	Q96KM6	892 aa	Predicted RBP	5.79	□□□□□ -1.48
PTCD3-209	ENST00000472044	ATG3	Q9NT62	314 aa		5.79	□□□□□ -1.48
PTCD3-209	ENST00000472044	KCNH3	Q9ULD8	1083 aa		5.79	□□□□□ -1.48
PTCD3-209	ENST00000472044	WDR64	B1ANS9	1081 aa		5.78	□□□□□ -1.48
PTCD3-209	ENST00000472044	EPHX1	P07099	455 aa		5.78	□□□□□ -1.48
PTCD3-209	ENST00000472044	OXCT1	P55809	520 aa		5.78	□□□□□ -1.48
PTCD3-209	ENST00000472044	IFRD2	Q12894	506 aa	Predicted RBP	5.78	□□□□□ -1.48
PTCD3-209	ENST00000472044	TCEAL1	Q15170	157 aa		5.78	□□□□□ -1.48
PTCD3-209	ENST00000472044	HEATR6	Q6AI08	1181 aa	Known RBP	5.78	□□□□□ -1.48
PTCD3-209	ENST00000472044	GPAT2	Q6NUI2	795 aa		5.78	□□□□□ -1.48
PTCD3-209	ENST00000472044	ZDHHC13	Q8IUH4	622 aa		5.78	□□□□□ -1.48
PTCD3-209	ENST00000472044	ZNF513	Q8N8E2	541 aa	Predicted RBP	5.78	□□□□□ -1.48
PTCD3-209	ENST00000472044	DTWD2	Q8NBA8	298 aa		5.78	□□□□□ -1.48
PTCD3-209	ENST00000472044	APBA2	Q99767	749 aa		5.78	□□□□□ -1.48
PTCD3-209	ENST00000472044	OSBPL1A	Q9BXW6	950 aa		5.78	□□□□□ -1.48
PTCD3-209	ENST00000472044	GP6	Q9HCN6	339 aa		5.78	□□□□□ -1.48
PTCD3-209	ENST00000472044	ZNF451	Q9Y4E5	1061 aa		5.78	□□□□□ -1.48
PTCD3-209	ENST00000472044	PCDHB12	Q9Y5F1	795 aa		5.78	□□□□□ -1.48
PTCD3-209	ENST00000472044	CAPN6	Q9Y6Q1	641 aa		5.78	□□□□□ -1.48
PTCD3-209	ENST00000472044	CADPS	Q9ULU8	1353 aa		5.78	□□□□□ -1.48
PTCD3-209	ENST00000472044	CCDC85C	A6NKD9	419 aa		5.77	□□□□□ -1.49
PTCD3-209	ENST00000472044	PRR33	A8MZF0	331 aa		5.77	□□□□□ -1.49
PTCD3-209	ENST00000472044	LRRN2	O75325	713 aa		5.77	□□□□□ -1.49
PTCD3-209	ENST00000472044	SRF	P11831	508 aa		5.77	□□□□□ -1.49
PTCD3-209	ENST00000472044	TNK2	Q07912	1038 aa		5.77	□□□□□ -1.49
PTCD3-209	ENST00000472044	SLC10A6	Q3KNW5	377 aa		5.77	□□□□□ -1.49
PTCD3-209	ENST00000472044	MTERF2	Q49AM1	385 aa		5.77	□□□□□ -1.49
PTCD3-209	ENST00000472044	MFSD4A	Q8N468	514 aa		5.77	□□□□□ -1.49
PTCD3-209	ENST00000472044	ENOX1	Q8TC92	643 aa	Known RBP	5.77	□□□□□ -1.49
PTCD3-209	ENST00000472044	SGSM3	Q96HU1	749 aa		5.77	□□□□□ -1.49
PTCD3-209	ENST00000472044	RCC1L	Q96I51	464 aa	Known RBP	5.77	□□□□□ -1.49

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